Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 C 1.52992 * 109.47359 * 239.99719 * 2 1 3 5 5 C 1.53003 * 109.46943 * 119.99403 * 2 1 3 6 6 N 1.46503 * 109.46843 * 63.61118 * 5 2 1 7 7 C 1.46499 * 119.99880 * 273.68530 * 6 5 2 8 8 C 1.50703 * 109.46792 * 264.28305 * 7 6 5 9 9 C 1.38234 * 120.00018 * 84.82951 * 8 7 6 10 10 C 1.38236 * 120.00116 * 179.97438 * 9 8 7 11 11 C 1.38241 * 119.99877 * 359.97158 * 10 9 8 12 12 C 1.38234 * 119.99703 * 0.27951 * 11 10 9 13 13 C 1.38229 * 120.00143 * 264.80007 * 8 7 6 14 14 C 1.34780 * 120.00179 * 93.68820 * 6 5 2 15 15 O 1.21686 * 119.99612 * 180.02562 * 14 6 5 16 16 C 1.46376 * 119.99975 * 359.97438 * 14 6 5 17 17 H 1.08001 * 119.99700 * 357.55658 * 16 14 6 18 18 C 1.40051 * 119.99854 * 177.55864 * 16 14 6 19 19 N 1.30671 * 119.99717 * 6.47058 * 18 16 14 20 20 Si 1.86795 * 119.99901 * 186.47345 * 18 16 14 21 21 H 1.48502 * 109.47468 * 94.97512 * 20 18 16 22 22 H 1.48500 * 109.47214 * 214.97709 * 20 18 16 23 23 H 1.48505 * 109.47079 * 334.97365 * 20 18 16 24 24 H 1.09007 * 109.47215 * 300.00180 * 1 2 3 25 25 H 1.08995 * 109.47188 * 60.00192 * 1 2 3 26 26 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47116 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46902 * 299.99722 * 3 2 1 29 29 H 1.08993 * 109.47152 * 59.99718 * 3 2 1 30 30 H 1.08998 * 109.47200 * 298.96667 * 4 2 1 31 31 H 1.09008 * 109.47002 * 58.96647 * 4 2 1 32 32 H 1.09000 * 109.47432 * 178.96290 * 4 2 1 33 33 H 1.08997 * 109.47685 * 303.60484 * 5 2 1 34 34 H 1.09007 * 109.46975 * 183.60671 * 5 2 1 35 35 H 1.08995 * 109.47306 * 144.28081 * 7 6 5 36 36 H 1.09000 * 109.46876 * 24.27753 * 7 6 5 37 37 H 1.08003 * 120.00495 * 359.96802 * 9 8 7 38 38 H 1.07997 * 120.00490 * 179.97438 * 10 9 8 39 39 H 1.07996 * 119.99863 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.99852 * 179.72511 * 12 11 10 41 41 H 1.08009 * 119.99990 * 0.02562 * 13 8 7 42 42 H 0.96997 * 119.99407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 7 1.6239 -2.1252 1.2067 7 6 0.3095 -2.5157 1.7227 8 6 0.4495 -2.9903 3.1461 9 6 0.4418 -2.0765 4.1833 10 6 0.5696 -2.5118 5.4891 11 6 0.7045 -3.8612 5.7577 12 6 0.7175 -4.7745 4.7201 13 6 0.5849 -4.3394 3.4147 14 6 2.4503 -3.0577 0.6929 15 8 2.1045 -4.2238 0.6571 16 6 3.7634 -2.6675 0.1769 17 1 4.0542 -1.6274 0.1717 18 6 4.6425 -3.6430 -0.3099 19 7 4.2456 -4.8829 -0.4217 20 14 6.3825 -3.1714 -0.7994 21 1 7.3016 -3.4184 0.3405 22 1 6.8077 -3.9886 -1.9641 23 1 6.4214 -1.7323 -1.1639 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6920 -1.7541 -1.2399 31 1 1.6616 -0.2182 -2.1391 32 1 3.1299 -0.7052 -1.2585 33 1 1.6249 -0.2460 2.1381 34 1 3.1281 -0.6655 1.2823 35 1 -0.0971 -3.3200 1.1097 36 1 -0.3629 -1.6584 1.6900 37 1 0.3360 -1.0223 3.9736 38 1 0.5640 -1.7979 6.2994 39 1 0.8040 -4.2013 6.7778 40 1 0.8274 -5.8283 4.9296 41 1 0.5909 -5.0535 2.6043 42 1 4.8546 -5.5585 -0.7585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274721451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -38.610773 kcal Electronic energy + Delta-G solvation = -22325.948872 eV Core-core repulsion = 19269.800814 eV Total energy + Delta-G solvation = -3056.148057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72579 -39.46144 -37.71130 -35.17497 -34.30492 -32.31362 -31.69893 -29.24277 -28.08885 -27.59118 -27.24405 -25.74221 -23.35862 -22.52451 -20.93371 -19.91655 -18.09844 -17.67233 -17.51596 -16.54910 -16.30279 -16.11492 -15.63902 -15.51745 -14.95364 -14.63308 -14.24056 -14.21855 -14.09114 -13.74046 -13.42014 -13.14854 -13.03608 -13.02526 -12.80113 -12.69503 -12.38262 -12.27463 -12.16932 -12.02433 -11.97649 -11.82559 -11.59554 -11.39938 -11.15013 -10.86278 -9.84294 -9.74330 -9.43599 -8.93522 -8.21125 -6.68209 0.50477 0.57936 1.37825 1.38451 1.52531 2.24999 2.55732 2.79320 3.23081 3.70591 3.98652 4.00419 4.06879 4.17546 4.22180 4.26242 4.34279 4.42331 4.65802 4.67233 4.79212 4.82488 4.85213 4.92915 4.95239 5.06212 5.10191 5.17338 5.21106 5.23369 5.25639 5.35275 5.44621 5.47743 5.62119 5.64892 5.67651 5.73785 5.81616 5.96631 6.21132 6.26593 6.52367 6.98154 7.56647 8.59706 8.79349 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.007814 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.401335 B = 3582.262152 C = 4949.304745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.123 4.123 5 C 0.134 3.866 6 N -0.627 5.627 7 C 0.164 3.836 8 C -0.107 4.107 9 C -0.113 4.113 10 C -0.124 4.124 11 C -0.126 4.126 12 C -0.139 4.139 13 C -0.121 4.121 14 C 0.552 3.448 15 O -0.626 6.626 16 C -0.550 4.550 17 H 0.090 0.910 18 C 0.031 3.969 19 N -0.823 5.823 20 Si 0.977 3.023 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.245 1.245 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 12.266 7.446 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.187 4.187 4 C -0.180 4.180 5 C 0.011 3.989 6 N -0.361 5.361 7 C 0.041 3.959 8 C -0.109 4.109 9 C -0.131 4.131 10 C -0.142 4.142 11 C -0.144 4.144 12 C -0.157 4.157 13 C -0.140 4.140 14 C 0.358 3.642 15 O -0.513 6.513 16 C -0.587 4.587 17 H 0.108 0.892 18 C -0.183 4.183 19 N -0.453 5.453 20 Si 0.798 3.202 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.168 1.168 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.818 11.475 7.354 14.819 hybrid contribution 0.849 -0.866 -0.705 1.403 sum -4.969 10.608 6.649 13.470 Atomic orbital electron populations 1.21924 0.94228 1.00943 1.02259 1.20972 0.96297 0.95977 0.95186 1.21737 1.00816 0.93568 1.02588 1.21764 1.00694 0.98683 0.96871 1.21494 0.99812 0.80699 0.96929 1.47804 1.16140 1.07746 1.64407 1.20147 0.86775 0.99554 0.89450 1.20579 0.99715 0.93609 0.96985 1.21243 0.99946 0.99587 0.92339 1.21478 0.99663 0.96188 0.96871 1.21429 1.00029 0.93520 0.99451 1.21332 1.01096 1.00608 0.92622 1.21164 0.99726 0.96267 0.96824 1.18441 0.85191 0.83699 0.76895 1.90543 1.77293 1.20724 1.62726 1.21428 0.99252 0.95171 1.42861 0.89187 1.26812 1.04098 0.94200 0.93239 1.70205 1.36769 1.03104 1.35216 0.85302 0.76903 0.79917 0.78103 1.19396 1.20241 1.16834 0.90991 0.92251 0.94298 0.93086 0.91887 0.91016 0.95956 0.93233 0.93385 0.90423 0.91733 0.94519 0.87825 0.84141 0.82848 0.83442 0.85747 0.89509 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 7.30 71.98 0.53 -3.04 16 2 C -0.08 -2.47 0.85 -52.18 -0.04 -2.52 16 3 C -0.13 -2.94 8.47 71.98 0.61 -2.33 16 4 C -0.12 -4.55 7.00 71.98 0.50 -4.05 16 5 C 0.13 4.64 4.48 86.38 0.39 5.02 16 6 N -0.63 -27.42 1.97 -831.23 -1.64 -29.06 16 7 C 0.16 6.47 4.32 85.63 0.37 6.84 16 8 C -0.11 -4.08 5.41 -19.87 -0.11 -4.18 16 9 C -0.11 -3.36 9.72 22.27 0.22 -3.14 16 10 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 11 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 12 C -0.14 -4.76 10.05 22.27 0.22 -4.53 16 13 C -0.12 -5.05 9.39 22.27 0.21 -4.84 16 14 C 0.55 31.11 6.11 86.36 0.53 31.63 16 15 O -0.63 -41.22 13.96 -4.30 -0.06 -41.28 16 16 C -0.55 -30.29 6.98 24.83 0.17 -30.12 16 17 H 0.09 4.49 4.70 -2.91 -0.01 4.48 16 18 C 0.03 1.72 5.49 85.31 0.47 2.19 16 19 N -0.82 -50.78 11.85 21.84 0.26 -50.52 16 20 Si 0.98 41.62 29.56 68.60 2.03 43.64 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.19 5.73 -2.38 -0.01 1.18 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 1.00 6.29 -2.39 -0.02 0.99 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.05 1.90 6.40 -2.39 -0.02 1.88 16 33 H 0.08 2.20 8.00 -2.39 -0.02 2.18 16 34 H 0.06 2.46 5.92 -2.38 -0.01 2.44 16 35 H 0.04 1.68 7.51 -2.39 -0.02 1.67 16 36 H 0.10 3.25 5.83 -2.39 -0.01 3.24 16 37 H 0.14 3.35 7.96 -2.91 -0.02 3.32 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.09 4.26 7.60 -2.91 -0.02 4.23 16 42 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -74.97 331.57 6.10 -68.88 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.00 Total: 27.64 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.51 Total: -19.31 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.38 Total: -79.57 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.06 Total: -41.28 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -74.97 6.10 -68.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274721451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.265 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds