Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.53003 * 109.46804 * 119.99709 * 2 1 3 5 5 C 1.53000 * 109.47130 * 239.99591 * 2 1 3 6 6 C 1.53002 * 109.46996 * 65.12270 * 5 2 1 7 7 H 1.08998 * 109.46789 * 52.09060 * 6 5 2 8 8 N 1.46501 * 109.46903 * 172.08617 * 6 5 2 9 9 C 1.34771 * 120.00299 * 275.62616 * 8 6 5 10 10 O 1.21699 * 120.00013 * 5.20542 * 9 8 6 11 11 C 1.46371 * 120.00436 * 185.20098 * 9 8 6 12 12 H 1.08002 * 119.99818 * 0.02562 * 11 9 8 13 13 C 1.40050 * 120.00616 * 180.02562 * 11 9 8 14 14 N 1.30680 * 119.99638 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00338 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47018 * 59.99984 * 15 13 11 17 17 H 1.48498 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47186 * 300.00190 * 15 13 11 19 19 C 1.50699 * 109.47494 * 292.08814 * 6 5 2 20 20 C 1.38237 * 120.00066 * 296.16295 * 19 6 5 21 21 C 1.38235 * 119.99547 * 179.78550 * 20 19 6 22 22 C 1.38228 * 120.00125 * 0.44200 * 21 20 19 23 23 C 1.38229 * 120.00511 * 359.80891 * 22 21 20 24 24 C 1.38238 * 119.99729 * 116.43404 * 19 6 5 25 25 H 1.09001 * 109.47136 * 41.99532 * 1 2 3 26 26 H 1.09004 * 109.47398 * 162.00073 * 1 2 3 27 27 H 1.08997 * 109.47183 * 282.00161 * 1 2 3 28 28 H 1.09000 * 109.47483 * 66.59639 * 3 2 1 29 29 H 1.08998 * 109.46784 * 186.60220 * 3 2 1 30 30 H 1.09000 * 109.46849 * 306.59690 * 3 2 1 31 31 H 1.09005 * 109.47180 * 60.00014 * 4 2 1 32 32 H 1.09007 * 109.46847 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47317 * 300.00038 * 4 2 1 34 34 H 1.08998 * 109.47390 * 185.12549 * 5 2 1 35 35 H 1.09006 * 109.47061 * 305.12588 * 5 2 1 36 36 H 0.97006 * 119.99795 * 95.63136 * 8 6 5 37 37 H 0.96994 * 119.99457 * 180.02562 * 14 13 11 38 38 H 1.08001 * 119.99718 * 359.97438 * 20 19 6 39 39 H 1.07999 * 119.99468 * 180.27221 * 21 20 19 40 40 H 1.08004 * 119.99437 * 179.83215 * 22 21 20 41 41 H 1.08000 * 120.00456 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00376 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2492 6 6 1.6379 0.0704 -2.4952 7 1 1.9540 1.1076 -2.3842 8 7 2.2830 -0.5133 -3.6739 9 6 3.5421 -0.1584 -3.9981 10 8 4.1770 0.5730 -3.2612 11 6 4.1460 -0.6527 -5.2364 12 1 3.5824 -1.3015 -5.8905 13 6 5.4546 -0.2844 -5.5731 14 7 6.1366 0.5003 -4.7814 15 14 6.2249 -0.9147 -7.1538 16 1 5.4153 -0.4624 -8.3136 17 1 7.6065 -0.3842 -7.2769 18 1 6.2656 -2.3988 -7.1271 19 6 0.1412 0.0166 -2.6633 20 6 -0.4845 -1.1928 -2.9016 21 6 -1.8578 -1.2427 -3.0514 22 6 -2.6043 -0.0820 -2.9720 23 6 -1.9781 1.1280 -2.7388 24 6 -0.6053 1.1774 -2.5847 25 1 -0.3633 0.7638 -0.6876 26 1 -0.3634 -0.9774 -0.3176 27 1 -0.3633 0.2137 1.0052 28 1 1.7763 1.9211 0.9431 29 1 3.1235 1.4447 -0.1182 30 1 1.5834 1.9892 -0.8251 31 1 1.6765 -1.7489 1.2494 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -0.2074 2.1393 34 1 3.1261 -0.8016 -1.2045 35 1 1.6036 -1.7191 -1.2962 36 1 1.8039 -1.1552 -4.2211 37 1 7.0428 0.7556 -5.0148 38 1 0.0993 -2.0990 -2.9678 39 1 -2.3471 -2.1881 -3.2333 40 1 -3.6770 -0.1208 -3.0917 41 1 -2.5614 2.0349 -2.6771 42 1 -0.1160 2.1228 -2.4024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274773351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -29.188181 kcal Electronic energy + Delta-G solvation = -22045.594408 eV Core-core repulsion = 18989.854945 eV Total energy + Delta-G solvation = -3055.739463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02232 -37.48050 -36.59626 -33.60066 -32.34062 -30.89084 -30.44147 -28.14647 -26.96584 -26.77505 -25.96667 -23.47763 -22.40210 -20.84990 -19.33379 -18.25784 -17.52775 -16.42116 -15.46967 -15.16620 -14.90043 -14.47549 -14.16679 -14.09451 -13.87799 -13.35231 -13.25148 -13.01358 -12.66104 -12.45549 -12.12698 -12.05950 -11.69631 -11.48322 -11.23839 -11.17062 -11.13501 -10.95443 -10.77615 -10.53706 -10.42666 -10.32709 -10.25472 -10.09969 -9.97446 -8.82573 -8.66489 -8.36193 -7.54955 -7.46455 -6.16193 -4.61669 1.54682 1.57895 3.16875 3.21791 3.23602 3.94947 4.13624 4.60624 4.82309 5.01809 5.07699 5.13329 5.20413 5.22385 5.28055 5.36673 5.69109 5.71695 5.78258 5.81902 5.89987 5.93623 5.98014 6.05346 6.13659 6.16106 6.19921 6.24857 6.31572 6.40958 6.52706 6.53708 6.62321 6.65426 6.68785 6.77147 6.92370 7.00478 7.19559 7.45278 7.96131 8.13891 8.35673 9.04721 9.56633 10.62306 10.81316 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.005577 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.160881 B = 5019.519667 C = 5975.548090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.111 4.111 6 C 0.190 3.810 7 H 0.086 0.914 8 N -0.760 5.760 9 C 0.557 3.443 10 O -0.577 6.577 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.089 3.911 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.059 4.059 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.110 4.110 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -1.854 6.391 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.195 4.195 5 C -0.150 4.150 6 C 0.084 3.916 7 H 0.104 0.896 8 N -0.414 5.414 9 C 0.361 3.639 10 O -0.460 6.460 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.060 4.060 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.141 4.141 24 C -0.128 4.128 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.210 0.790 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.352 -1.185 6.961 15.104 hybrid contribution 0.097 -0.707 -1.060 1.278 sum -13.254 -1.892 5.901 14.631 Atomic orbital electron populations 1.22477 0.95101 1.02441 1.01175 1.20467 0.95214 0.95772 0.95068 1.21922 1.02019 0.95265 1.00572 1.21865 1.01103 0.99762 0.96796 1.22097 1.02026 0.97915 0.92997 1.19585 0.85882 0.99160 0.86944 0.89621 1.46271 1.17210 1.49354 1.28604 1.18181 0.78554 0.80649 0.86554 1.90598 1.61304 1.40527 1.53541 1.20856 0.99195 1.32474 1.05758 0.91628 1.25680 0.96842 0.93427 0.97133 1.70010 1.09418 1.25969 1.34264 0.86467 0.78295 0.79715 0.82462 1.19330 1.20585 1.19337 1.20213 0.96238 0.93134 0.96426 1.20991 0.94407 0.97716 1.00116 1.21060 0.94050 0.98070 1.00660 1.21020 0.99396 0.92884 1.01584 1.21048 0.94550 0.97706 1.00843 1.20982 0.93910 0.97974 0.99950 0.90737 0.92918 0.94061 0.93602 0.91966 0.92609 0.93169 0.92687 0.93233 0.90691 0.92764 0.78982 0.92130 0.86164 0.86552 0.86719 0.86494 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 7.18 37.16 0.27 -1.81 16 2 C -0.06 -0.96 0.80 -154.51 -0.12 -1.08 16 3 C -0.14 -2.17 7.74 37.16 0.29 -1.89 16 4 C -0.14 -1.86 8.39 37.16 0.31 -1.55 16 5 C -0.11 -1.97 4.13 -26.73 -0.11 -2.08 16 6 C 0.19 3.59 1.93 -69.08 -0.13 3.46 16 7 H 0.09 1.83 5.32 -51.93 -0.28 1.55 16 8 N -0.76 -16.85 5.04 -56.34 -0.28 -17.14 16 9 C 0.56 15.58 7.69 -12.99 -0.10 15.48 16 10 O -0.58 -18.15 14.62 5.19 0.08 -18.07 16 11 C -0.55 -15.39 9.54 -35.63 -0.34 -15.73 16 12 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 14 N -0.77 -22.92 11.83 55.55 0.66 -22.26 16 15 Si 0.91 20.22 29.56 -169.99 -5.02 15.19 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.06 -0.92 2.78 -104.62 -0.29 -1.21 16 20 C -0.11 -1.60 7.51 -39.58 -0.30 -1.89 16 21 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 22 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 23 C -0.12 -1.50 10.04 -39.58 -0.40 -1.90 16 24 C -0.11 -1.55 6.92 -39.58 -0.27 -1.83 16 25 H 0.07 1.01 3.74 -51.93 -0.19 0.81 16 26 H 0.05 0.71 6.84 -51.93 -0.35 0.36 16 27 H 0.04 0.50 8.01 -51.93 -0.42 0.09 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.60 8.00 -51.93 -0.42 1.18 16 35 H 0.05 0.90 7.29 -51.93 -0.38 0.52 16 36 H 0.38 7.61 7.90 -40.82 -0.32 7.29 16 37 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 38 H 0.12 1.64 7.64 -52.49 -0.40 1.24 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.66 7.66 -52.49 -0.40 1.26 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -32.42 332.14 -8.07 -40.48 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.41 Total: 10.20 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.09 Total: -13.41 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.37 Total: -39.40 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.08 Total: -18.07 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.42 -8.07 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274773351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.295 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds