Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 C 1.53003 * 109.46804 * 119.99709 * 2 1 3 5 5 C 1.53000 * 109.47130 * 239.99591 * 2 1 3 6 6 C 1.53002 * 109.46996 * 65.12270 * 5 2 1 7 7 H 1.08998 * 109.46789 * 52.09060 * 6 5 2 8 8 N 1.46501 * 109.46903 * 172.08617 * 6 5 2 9 9 C 1.34771 * 120.00299 * 275.62616 * 8 6 5 10 10 O 1.21699 * 120.00013 * 5.20542 * 9 8 6 11 11 C 1.46371 * 120.00436 * 185.20098 * 9 8 6 12 12 H 1.08002 * 119.99818 * 0.02562 * 11 9 8 13 13 C 1.40050 * 120.00616 * 180.02562 * 11 9 8 14 14 N 1.30680 * 119.99638 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00338 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47018 * 59.99984 * 15 13 11 17 17 H 1.48498 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47186 * 300.00190 * 15 13 11 19 19 C 1.50699 * 109.47494 * 292.08814 * 6 5 2 20 20 C 1.38237 * 120.00066 * 296.16295 * 19 6 5 21 21 C 1.38235 * 119.99547 * 179.78550 * 20 19 6 22 22 C 1.38228 * 120.00125 * 0.44200 * 21 20 19 23 23 C 1.38229 * 120.00511 * 359.80891 * 22 21 20 24 24 C 1.38238 * 119.99729 * 116.43404 * 19 6 5 25 25 H 1.09001 * 109.47136 * 41.99532 * 1 2 3 26 26 H 1.09004 * 109.47398 * 162.00073 * 1 2 3 27 27 H 1.08997 * 109.47183 * 282.00161 * 1 2 3 28 28 H 1.09000 * 109.47483 * 66.59639 * 3 2 1 29 29 H 1.08998 * 109.46784 * 186.60220 * 3 2 1 30 30 H 1.09000 * 109.46849 * 306.59690 * 3 2 1 31 31 H 1.09005 * 109.47180 * 60.00014 * 4 2 1 32 32 H 1.09007 * 109.46847 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47317 * 300.00038 * 4 2 1 34 34 H 1.08998 * 109.47390 * 185.12549 * 5 2 1 35 35 H 1.09006 * 109.47061 * 305.12588 * 5 2 1 36 36 H 0.97006 * 119.99795 * 95.63136 * 8 6 5 37 37 H 0.96994 * 119.99457 * 180.02562 * 14 13 11 38 38 H 1.08001 * 119.99718 * 359.97438 * 20 19 6 39 39 H 1.07999 * 119.99468 * 180.27221 * 21 20 19 40 40 H 1.08004 * 119.99437 * 179.83215 * 22 21 20 41 41 H 1.08000 * 120.00456 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00376 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2492 6 6 1.6379 0.0704 -2.4952 7 1 1.9540 1.1076 -2.3842 8 7 2.2830 -0.5133 -3.6739 9 6 3.5421 -0.1584 -3.9981 10 8 4.1770 0.5730 -3.2612 11 6 4.1460 -0.6527 -5.2364 12 1 3.5824 -1.3015 -5.8905 13 6 5.4546 -0.2844 -5.5731 14 7 6.1366 0.5003 -4.7814 15 14 6.2249 -0.9147 -7.1538 16 1 5.4153 -0.4624 -8.3136 17 1 7.6065 -0.3842 -7.2769 18 1 6.2656 -2.3988 -7.1271 19 6 0.1412 0.0166 -2.6633 20 6 -0.4845 -1.1928 -2.9016 21 6 -1.8578 -1.2427 -3.0514 22 6 -2.6043 -0.0820 -2.9720 23 6 -1.9781 1.1280 -2.7388 24 6 -0.6053 1.1774 -2.5847 25 1 -0.3633 0.7638 -0.6876 26 1 -0.3634 -0.9774 -0.3176 27 1 -0.3633 0.2137 1.0052 28 1 1.7763 1.9211 0.9431 29 1 3.1235 1.4447 -0.1182 30 1 1.5834 1.9892 -0.8251 31 1 1.6765 -1.7489 1.2494 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -0.2074 2.1393 34 1 3.1261 -0.8016 -1.2045 35 1 1.6036 -1.7191 -1.2962 36 1 1.8039 -1.1552 -4.2211 37 1 7.0428 0.7556 -5.0148 38 1 0.0993 -2.0990 -2.9678 39 1 -2.3471 -2.1881 -3.2333 40 1 -3.6770 -0.1208 -3.0917 41 1 -2.5614 2.0349 -2.6771 42 1 -0.1160 2.1228 -2.4024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274773351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -49.184726 kcal Electronic energy + Delta-G solvation = -22046.461523 eV Core-core repulsion = 18989.854945 eV Total energy + Delta-G solvation = -3056.606578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28515 -39.10941 -38.13819 -35.32543 -34.45488 -32.09077 -31.73244 -29.63144 -28.23183 -28.00864 -27.86104 -24.82533 -23.47674 -22.31612 -21.09309 -19.54916 -19.38435 -17.74244 -17.38808 -16.63738 -16.27225 -15.70279 -15.63325 -15.39001 -15.28215 -14.88862 -14.38304 -14.36036 -14.20040 -14.10962 -13.61718 -13.24678 -13.12285 -12.89885 -12.82622 -12.68496 -12.60456 -12.40954 -12.29789 -12.07547 -11.87154 -11.74674 -11.53514 -11.45367 -11.36546 -10.91051 -9.89207 -9.65031 -9.46454 -9.31126 -8.27383 -6.84470 0.49484 0.56896 1.38592 1.42187 1.53506 2.24439 2.48915 2.88965 3.23468 3.62779 3.75114 3.94396 3.95200 4.04616 4.09261 4.22846 4.35070 4.45907 4.56607 4.66087 4.69931 4.71861 4.80610 4.85196 4.90434 5.01855 5.05337 5.08493 5.12129 5.19540 5.24360 5.28566 5.31842 5.38384 5.50869 5.58142 5.67066 5.69422 5.78636 5.91061 6.18256 6.24725 6.34079 6.87592 7.57190 8.51838 8.69339 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.005577 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.160881 B = 5019.519667 C = 5975.548090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.102 4.102 6 C 0.194 3.806 7 H 0.052 0.948 8 N -0.750 5.750 9 C 0.542 3.458 10 O -0.624 6.624 11 C -0.576 4.576 12 H 0.083 0.917 13 C 0.031 3.969 14 N -0.821 5.821 15 Si 0.995 3.005 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.255 1.255 19 C -0.075 4.075 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.389 0.611 37 H 0.273 0.727 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -3.051 5.731 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.194 4.194 4 C -0.193 4.193 5 C -0.141 4.141 6 C 0.089 3.911 7 H 0.070 0.930 8 N -0.403 5.403 9 C 0.345 3.655 10 O -0.511 6.511 11 C -0.613 4.613 12 H 0.101 0.899 13 C -0.184 4.184 14 N -0.450 5.450 15 Si 0.814 3.186 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.179 1.179 19 C -0.076 4.076 20 C -0.141 4.141 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.141 4.141 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.452 -2.405 6.310 17.784 hybrid contribution 0.936 -0.313 -0.821 1.284 sum -15.515 -2.718 5.489 16.680 Atomic orbital electron populations 1.22363 0.92955 1.02606 1.02313 1.20450 0.96807 0.94807 0.94141 1.21884 0.99599 0.96289 1.01632 1.21848 1.00092 1.00535 0.96797 1.21961 0.98866 0.98877 0.94363 1.19558 0.88536 0.97015 0.85959 0.93005 1.45980 1.15787 1.48924 1.29616 1.18522 0.80032 0.80296 0.86605 1.90554 1.63055 1.42587 1.54911 1.21404 1.00359 1.33184 1.06356 0.89880 1.26924 0.97100 0.93034 1.01389 1.70186 1.10111 1.27668 1.37067 0.85114 0.77228 0.79478 0.76733 1.17956 1.19843 1.17877 1.19824 0.93572 0.94706 0.99508 1.21035 0.95642 0.96804 1.00578 1.21369 0.92989 0.99716 0.99376 1.21446 1.01071 0.92058 0.99378 1.21342 0.93496 0.99330 0.99591 1.21021 0.95139 0.97165 1.00739 0.90832 0.92704 0.92157 0.90923 0.95492 0.93403 0.92075 0.94390 0.90958 0.95632 0.91628 0.77716 0.91671 0.86429 0.83829 0.83384 0.83933 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 7.18 71.98 0.52 -3.14 16 2 C -0.06 -1.86 0.80 -52.18 -0.04 -1.90 16 3 C -0.14 -4.46 7.74 71.98 0.56 -3.90 16 4 C -0.14 -3.61 8.39 71.98 0.60 -3.00 16 5 C -0.10 -3.82 4.13 30.60 0.13 -3.69 16 6 C 0.19 7.78 1.93 44.25 0.09 7.86 16 7 H 0.05 2.42 5.32 -2.39 -0.01 2.40 16 8 N -0.75 -35.01 5.04 -450.39 -2.27 -37.27 16 9 C 0.54 32.08 7.69 86.36 0.66 32.75 16 10 O -0.62 -42.24 14.62 -4.35 -0.06 -42.31 16 11 C -0.58 -33.48 9.54 24.83 0.24 -33.24 16 12 H 0.08 4.36 7.85 -2.91 -0.02 4.33 16 13 C 0.03 1.74 5.50 85.30 0.47 2.21 16 14 N -0.82 -51.13 11.83 21.84 0.26 -50.87 16 15 Si 1.00 41.82 29.56 68.60 2.03 43.85 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 19 C -0.08 -2.33 2.78 -19.86 -0.06 -2.39 16 20 C -0.12 -3.23 7.51 22.27 0.17 -3.07 16 21 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 22 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.12 -2.54 10.04 22.27 0.22 -2.31 16 24 C -0.12 -3.36 6.92 22.27 0.15 -3.21 16 25 H 0.07 1.89 3.74 -2.39 -0.01 1.88 16 26 H 0.05 1.36 6.84 -2.38 -0.02 1.34 16 27 H 0.06 1.29 8.01 -2.39 -0.02 1.27 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.60 6.15 -2.39 -0.01 1.59 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.02 1.18 8.00 -2.39 -0.02 1.16 16 35 H 0.07 2.25 7.29 -2.38 -0.02 2.23 16 36 H 0.39 16.16 7.90 -92.70 -0.73 15.43 16 37 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 38 H 0.12 3.10 7.64 -2.91 -0.02 3.08 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.11 3.19 7.66 -2.91 -0.02 3.16 16 Total: -1.00 -75.53 332.14 4.39 -71.15 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.28 Total: 36.73 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.16 Total: -21.27 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -2.01 Total: -88.14 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.06 Total: -42.31 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -75.53 4.39 -71.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274773351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.964 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds