Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 C 1.53003 * 109.47348 * 240.00139 * 2 1 3 5 5 C 1.53008 * 109.47322 * 119.99981 * 2 1 3 6 6 C 1.53004 * 109.46707 * 56.94859 * 5 2 1 7 7 H 1.09002 * 109.47050 * 310.62188 * 6 5 2 8 8 N 1.46500 * 109.46882 * 190.63031 * 6 5 2 9 9 C 1.34773 * 120.00287 * 86.03624 * 8 6 5 10 10 O 1.21688 * 120.00046 * 4.85619 * 9 8 6 11 11 C 1.46375 * 120.00035 * 184.84538 * 9 8 6 12 12 H 1.07998 * 120.00443 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99960 * 180.02562 * 11 9 8 14 14 N 1.30672 * 119.99930 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99747 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47312 * 89.99963 * 15 13 11 17 17 H 1.48508 * 109.46589 * 209.99307 * 15 13 11 18 18 H 1.48496 * 109.47367 * 329.99132 * 15 13 11 19 19 C 1.50692 * 109.47241 * 70.63009 * 6 5 2 20 20 C 1.38229 * 120.00578 * 56.40230 * 19 6 5 21 21 C 1.38233 * 120.00358 * 179.78728 * 20 19 6 22 22 C 1.38235 * 120.00013 * 0.43931 * 21 20 19 23 23 C 1.38235 * 119.99846 * 359.81429 * 22 21 20 24 24 C 1.38237 * 119.99632 * 236.67491 * 19 6 5 25 25 H 1.09007 * 109.47265 * 294.19004 * 1 2 3 26 26 H 1.08995 * 109.47293 * 54.18816 * 1 2 3 27 27 H 1.09007 * 109.47473 * 174.19428 * 1 2 3 28 28 H 1.09000 * 109.47082 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46831 * 300.00160 * 3 2 1 30 30 H 1.09003 * 109.46815 * 60.00041 * 3 2 1 31 31 H 1.09007 * 109.46809 * 310.48071 * 4 2 1 32 32 H 1.08992 * 109.47028 * 70.47641 * 4 2 1 33 33 H 1.08996 * 109.47189 * 190.48610 * 4 2 1 34 34 H 1.08999 * 109.47301 * 176.94774 * 5 2 1 35 35 H 1.08996 * 109.46659 * 296.94756 * 5 2 1 36 36 H 0.97002 * 120.00093 * 266.04477 * 8 6 5 37 37 H 0.96996 * 119.99860 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.99994 * 359.97438 * 20 19 6 39 39 H 1.08001 * 120.00004 * 180.27348 * 21 20 19 40 40 H 1.07998 * 120.00071 * 179.83063 * 22 21 20 41 41 H 1.08000 * 120.00055 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00304 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2493 6 6 1.4682 -2.1399 1.2882 7 1 0.3911 -2.1021 1.1255 8 7 1.7437 -2.7417 2.5952 9 6 0.8991 -2.5333 3.6246 10 8 -0.1366 -1.9198 3.4472 11 6 1.2277 -3.0452 4.9560 12 1 2.1470 -3.5895 5.1136 13 6 0.3498 -2.8291 6.0256 14 7 -0.7624 -2.1700 5.8351 15 14 0.7694 -3.4817 7.7248 16 1 1.5390 -2.4555 8.4731 17 1 -0.4835 -3.7935 8.4586 18 1 1.5862 -4.7149 7.5936 19 6 2.1108 -2.9703 0.2073 20 6 3.4861 -3.1009 0.1615 21 6 4.0753 -3.8663 -0.8274 22 6 3.2896 -4.4937 -1.7760 23 6 1.9145 -4.3589 -1.7334 24 6 1.3251 -3.5970 -0.7419 25 1 -0.3634 0.4211 0.9375 26 1 -0.3633 0.6013 -0.8333 27 1 -0.3634 -1.0224 -0.1040 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.5321 -1.6807 -1.3477 32 1 1.8373 -0.1109 -2.1293 33 1 3.1138 -0.8860 -1.1607 34 1 3.1286 -0.7689 1.2223 35 1 1.7220 -0.1768 2.1384 36 1 2.5341 -3.2901 2.7197 37 1 -1.3702 -2.0200 6.5759 38 1 4.1003 -2.6074 0.9003 39 1 5.1496 -3.9718 -0.8605 40 1 3.7501 -5.0894 -2.5503 41 1 1.3006 -4.8487 -2.4748 42 1 0.2507 -3.4918 -0.7085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274773354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -50.217067 kcal Electronic energy + Delta-G solvation = -22027.761970 eV Core-core repulsion = 18971.110626 eV Total energy + Delta-G solvation = -3056.651344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25998 -39.11123 -38.15940 -35.31456 -34.45723 -32.09019 -31.75388 -29.59024 -28.22309 -28.02342 -27.87498 -24.85517 -23.44680 -22.31282 -21.10529 -19.53839 -19.37340 -17.75117 -17.40807 -16.68523 -16.25842 -15.72230 -15.62755 -15.41048 -15.25833 -14.81751 -14.46893 -14.37481 -14.16267 -14.08118 -13.63755 -13.23219 -13.11708 -12.88808 -12.82167 -12.70263 -12.61237 -12.41981 -12.31286 -12.03752 -11.86978 -11.74945 -11.55324 -11.45767 -11.35549 -10.92678 -9.91222 -9.67765 -9.42366 -9.34770 -8.27593 -6.84558 0.49047 0.56510 1.38629 1.40281 1.55228 2.24296 2.48712 2.88040 3.25642 3.63058 3.74551 3.94048 3.95134 4.03832 4.10074 4.22782 4.35193 4.46641 4.55853 4.65297 4.69488 4.72165 4.79884 4.86339 4.90769 5.00911 5.05191 5.08140 5.12265 5.18360 5.24327 5.27853 5.31928 5.37672 5.51181 5.57298 5.66507 5.68823 5.79589 5.91299 6.17984 6.24975 6.33945 6.87591 7.57237 8.51792 8.69301 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.005560 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.381490 B = 5034.998350 C = 5934.650444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.103 4.103 6 C 0.191 3.809 7 H 0.054 0.946 8 N -0.749 5.749 9 C 0.542 3.458 10 O -0.626 6.626 11 C -0.575 4.575 12 H 0.083 0.917 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.250 1.250 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.127 4.127 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.390 0.610 37 H 0.273 0.727 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 -1.527 -14.996 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.202 4.202 5 C -0.142 4.142 6 C 0.086 3.914 7 H 0.072 0.928 8 N -0.402 5.402 9 C 0.346 3.654 10 O -0.512 6.512 11 C -0.612 4.612 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.815 3.185 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.173 1.173 19 C -0.074 4.074 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.145 4.145 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.223 0.777 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.317 -0.992 -15.065 17.741 hybrid contribution -0.127 -0.184 1.254 1.274 sum 9.190 -1.176 -13.811 16.630 Atomic orbital electron populations 1.21862 0.95701 1.01087 1.00697 1.20455 0.94836 0.95991 0.94939 1.21831 1.01263 0.94539 1.01588 1.22301 1.01141 1.01159 0.95619 1.21979 1.00221 0.95015 0.96986 1.19593 0.98364 0.91405 0.82087 0.92756 1.45961 1.28491 1.56140 1.09608 1.18531 0.82265 0.79435 0.85172 1.90548 1.28124 1.47402 1.85173 1.21429 1.08071 1.38770 0.92923 0.89852 1.26929 0.93361 0.92991 1.05190 1.70189 1.09525 1.31646 1.33701 0.85059 0.78592 0.79543 0.75335 1.18629 1.19754 1.17336 1.19811 0.94607 0.97602 0.95407 1.21061 0.93460 0.99850 0.99518 1.21389 1.01044 0.96561 0.94333 1.21451 0.93455 0.99700 0.99415 1.21338 0.95883 0.98301 0.98186 1.21060 0.99464 0.98178 0.95834 0.95477 0.90970 0.93792 0.91842 0.91074 0.94275 0.91182 0.92197 0.92403 0.91084 0.95685 0.77734 0.91679 0.86132 0.83682 0.83367 0.84097 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 7.87 71.98 0.57 -3.98 16 2 C -0.06 -1.86 0.80 -52.18 -0.04 -1.90 16 3 C -0.13 -3.52 8.45 71.98 0.61 -2.91 16 4 C -0.15 -3.67 7.07 71.98 0.51 -3.16 16 5 C -0.10 -3.80 4.13 30.60 0.13 -3.67 16 6 C 0.19 7.61 2.09 44.24 0.09 7.71 16 7 H 0.05 2.56 5.03 -2.39 -0.01 2.54 16 8 N -0.75 -34.95 5.04 -450.40 -2.27 -37.22 16 9 C 0.54 32.11 7.72 86.36 0.67 32.78 16 10 O -0.63 -42.41 14.63 -4.31 -0.06 -42.48 16 11 C -0.58 -33.39 9.54 24.83 0.24 -33.16 16 12 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 13 C 0.03 1.72 5.50 85.31 0.47 2.19 16 14 N -0.82 -51.16 11.83 21.84 0.26 -50.90 16 15 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 19 C -0.07 -2.28 2.70 -19.87 -0.05 -2.34 16 20 C -0.12 -3.14 7.56 22.27 0.17 -2.97 16 21 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 24 C -0.13 -3.60 7.35 22.27 0.16 -3.44 16 25 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.55 6.44 -2.38 -0.02 1.53 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.86 3.84 -2.38 -0.01 1.85 16 32 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 33 H 0.06 1.39 7.14 -2.39 -0.02 1.37 16 34 H 0.07 2.33 6.85 -2.39 -0.02 2.32 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.39 16.18 8.25 -92.71 -0.77 15.41 16 37 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 38 H 0.12 3.07 7.32 -2.91 -0.02 3.05 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.11 3.25 7.95 -2.91 -0.02 3.22 16 Total: -1.00 -75.66 333.39 4.38 -71.28 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.24 Total: 36.90 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.18 Total: -21.44 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.01 Total: -88.12 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.06 Total: -42.48 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.66 4.38 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274773354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.059 kcal (2) G-P(sol) polarization free energy of solvation -75.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds