Wall clock time and date at job start Mon Mar 30 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46973 * 2 1 4 4 C 1.52997 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46973 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47597 * 304.99605 * 6 5 4 8 8 N 1.46500 * 109.47228 * 64.99945 * 6 5 4 9 9 C 1.34781 * 119.99961 * 204.99526 * 8 6 5 10 10 O 1.21684 * 119.99872 * 0.02562 * 9 8 6 11 11 C 1.46379 * 120.00031 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99677 * 353.94692 * 11 9 8 13 13 C 1.40043 * 120.00006 * 173.94051 * 11 9 8 14 14 N 1.30671 * 120.00039 * 6.15722 * 13 11 9 15 15 Si 1.86803 * 119.99920 * 186.15189 * 13 11 9 16 16 H 1.48498 * 109.47074 * 94.98867 * 15 13 11 17 17 H 1.48500 * 109.46656 * 214.98553 * 15 13 11 18 18 H 1.48495 * 109.47122 * 334.98358 * 15 13 11 19 19 C 1.50699 * 109.47056 * 184.99815 * 6 5 4 20 20 C 1.38240 * 120.00152 * 279.73007 * 19 6 5 21 21 C 1.38236 * 120.00181 * 179.78954 * 20 19 6 22 22 C 1.38233 * 119.99722 * 0.43381 * 21 20 19 23 23 C 1.38240 * 120.00350 * 359.81773 * 22 21 20 24 24 C 1.38233 * 120.00270 * 99.99883 * 19 6 5 25 25 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47193 * 300.00190 * 1 2 3 27 27 H 1.09003 * 109.47150 * 60.00547 * 1 2 3 28 28 H 1.09004 * 109.47606 * 240.00293 * 2 1 3 29 29 H 1.08994 * 109.47328 * 119.99452 * 2 1 3 30 30 H 1.08996 * 109.47316 * 59.99885 * 3 2 1 31 31 H 1.09003 * 109.46736 * 299.99707 * 3 2 1 32 32 H 1.09003 * 109.46776 * 299.99339 * 4 3 2 33 33 H 1.08999 * 109.47876 * 59.99580 * 4 3 2 34 34 H 1.09003 * 109.46736 * 299.99363 * 5 4 3 35 35 H 1.08996 * 109.47316 * 59.99542 * 5 4 3 36 36 H 0.97001 * 120.00204 * 24.99699 * 8 6 5 37 37 H 0.97002 * 120.00464 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.99776 * 359.97438 * 20 19 6 39 39 H 1.07995 * 119.99986 * 180.27004 * 21 20 19 40 40 H 1.08003 * 119.99992 * 179.83250 * 22 21 20 41 41 H 1.07996 * 120.00149 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99802 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6098 2.8852 -0.0013 7 1 5.9733 2.2962 0.8408 8 7 6.0982 2.3009 -1.2528 9 6 7.3203 1.7344 -1.3003 10 8 8.0177 1.7078 -0.3036 11 6 7.8080 1.1501 -2.5507 12 1 7.1538 1.0847 -3.4075 13 6 9.1230 0.6759 -2.6359 14 7 9.8764 0.6438 -1.5687 15 14 9.7999 0.0892 -4.2751 16 1 10.5335 1.1998 -4.9337 17 1 10.7253 -1.0500 -4.0492 18 1 8.6791 -0.3485 -5.1454 19 6 6.1122 4.3006 0.1219 20 6 6.1518 5.1193 -0.9913 21 6 6.6085 6.4191 -0.8775 22 6 7.0339 6.8973 0.3477 23 6 6.9992 6.0771 1.4599 24 6 6.5385 4.7787 1.3468 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9336 0.9287 0.8892 33 1 3.9330 0.9289 -0.8908 34 1 3.7162 3.3986 -0.8914 35 1 3.7169 3.3993 0.8886 36 1 5.5421 2.3217 -2.0473 37 1 10.7874 0.3158 -1.6278 38 1 5.8232 4.7444 -1.9493 39 1 6.6353 7.0600 -1.7463 40 1 7.3933 7.9120 0.4361 41 1 7.3320 6.4506 2.4170 42 1 6.5113 4.1378 2.2158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274919389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:31 Heat of formation + Delta-G solvation = -48.166902 kcal Electronic energy + Delta-G solvation = -21026.576338 eV Core-core repulsion = 17970.013896 eV Total energy + Delta-G solvation = -3056.562442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.18950 -37.26807 -36.09902 -34.22413 -32.41217 -31.17558 -30.58304 -30.23586 -27.49973 -26.00384 -23.87506 -22.16326 -21.53485 -20.79104 -20.58236 -19.24076 -17.21032 -16.42836 -15.74115 -15.30055 -14.92284 -14.86754 -14.25349 -13.95007 -13.75688 -13.48686 -13.24045 -12.93517 -12.87365 -12.49546 -12.17783 -11.98461 -11.90095 -11.63319 -11.22000 -11.16719 -11.02590 -10.86388 -10.76087 -10.71706 -10.47277 -10.38886 -10.28892 -10.18825 -10.14014 -8.82527 -8.45167 -8.24213 -7.55701 -7.49496 -6.16158 -4.60320 1.83989 1.87457 3.15098 3.22355 3.25456 4.11910 4.24306 4.61510 4.77791 4.89672 4.98436 5.12409 5.26049 5.35037 5.36009 5.37302 5.48727 5.53863 5.63209 5.70690 5.80474 5.87529 5.90642 5.95905 5.99788 6.05069 6.10502 6.13276 6.23505 6.26997 6.37555 6.47364 6.48815 6.62095 6.66788 6.91142 6.93795 7.17541 7.46284 7.47484 7.95638 8.13593 8.36478 9.05975 9.57409 10.63612 10.83137 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.006372 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.234378 B = 4393.429085 C = 6723.472268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.116 4.116 6 C 0.190 3.810 7 H 0.083 0.917 8 N -0.756 5.756 9 C 0.558 3.442 10 O -0.576 6.576 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.089 3.911 14 N -0.767 5.767 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.071 4.071 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.110 4.110 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.379 0.621 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 5.800 2.177 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.154 4.154 6 C 0.083 3.917 7 H 0.101 0.899 8 N -0.410 5.410 9 C 0.361 3.639 10 O -0.459 6.459 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.396 5.396 15 Si 0.729 3.271 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.708 5.699 3.006 14.248 hybrid contribution 0.287 -0.185 -1.235 1.281 sum -12.420 5.514 1.772 13.704 Atomic orbital electron populations 1.21778 0.96327 1.01262 1.01524 1.21547 0.95329 0.97355 1.02207 1.21618 0.95999 0.96341 1.01549 1.21582 0.94238 0.96715 1.03041 1.21813 0.94567 0.97038 1.01988 1.19481 0.91731 0.89125 0.91352 0.89864 1.46209 1.20243 1.64450 1.10104 1.18189 0.78557 0.77465 0.89664 1.90600 1.55956 1.62197 1.37111 1.20870 0.97838 1.42350 0.97297 0.91554 1.25671 0.96775 0.93658 0.96923 1.70026 1.07229 1.34008 1.28347 0.86418 0.79231 0.78653 0.82802 1.19874 1.20501 1.18922 1.20547 0.97227 0.96473 0.93077 1.20924 0.99296 0.93163 0.98361 1.21055 1.00140 0.96046 0.97215 1.20990 1.01521 0.99443 0.93271 1.21018 1.00654 0.94379 0.98312 1.20995 0.98944 0.95415 0.97471 0.93059 0.93000 0.92911 0.91908 0.92121 0.92445 0.92284 0.92070 0.91102 0.91934 0.91612 0.78955 0.92218 0.86402 0.86782 0.86925 0.86759 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.12 -1.31 5.21 -26.73 -0.14 -1.45 16 4 C -0.12 -1.62 5.10 -26.73 -0.14 -1.76 16 5 C -0.12 -1.65 4.73 -26.73 -0.13 -1.78 16 6 C 0.19 3.57 2.17 -69.08 -0.15 3.42 16 7 H 0.08 1.79 7.44 -51.93 -0.39 1.40 16 8 N -0.76 -16.27 3.75 -56.35 -0.21 -16.48 16 9 C 0.56 15.57 7.70 -12.98 -0.10 15.47 16 10 O -0.58 -18.50 14.71 5.20 0.08 -18.42 16 11 C -0.55 -15.35 9.53 -35.63 -0.34 -15.69 16 12 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 13 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 14 N -0.77 -23.17 11.85 55.55 0.66 -22.51 16 15 Si 0.90 20.29 29.56 -169.99 -5.03 15.27 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 C -0.07 -1.33 4.91 -104.62 -0.51 -1.85 16 20 C -0.10 -1.76 9.33 -39.58 -0.37 -2.13 16 21 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 22 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 23 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.38 7.22 8.58 -40.82 -0.35 6.87 16 37 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 38 H 0.12 2.01 7.71 -52.49 -0.40 1.60 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 1.92 8.04 -52.48 -0.42 1.50 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -33.66 352.30 -9.54 -43.19 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.01 Total: 9.05 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -3.34 Total: -15.41 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.45 Total: -39.00 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.08 Total: -18.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.66 -9.54 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274919389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.973 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds