Wall clock time and date at job start Mon Mar 30 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46973 * 2 1 4 4 C 1.52997 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46973 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47597 * 304.99605 * 6 5 4 8 8 N 1.46500 * 109.47228 * 64.99945 * 6 5 4 9 9 C 1.34781 * 119.99961 * 204.99526 * 8 6 5 10 10 O 1.21684 * 119.99872 * 0.02562 * 9 8 6 11 11 C 1.46379 * 120.00031 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99677 * 353.94692 * 11 9 8 13 13 C 1.40043 * 120.00006 * 173.94051 * 11 9 8 14 14 N 1.30671 * 120.00039 * 6.15722 * 13 11 9 15 15 Si 1.86803 * 119.99920 * 186.15189 * 13 11 9 16 16 H 1.48498 * 109.47074 * 94.98867 * 15 13 11 17 17 H 1.48500 * 109.46656 * 214.98553 * 15 13 11 18 18 H 1.48495 * 109.47122 * 334.98358 * 15 13 11 19 19 C 1.50699 * 109.47056 * 184.99815 * 6 5 4 20 20 C 1.38240 * 120.00152 * 279.73007 * 19 6 5 21 21 C 1.38236 * 120.00181 * 179.78954 * 20 19 6 22 22 C 1.38233 * 119.99722 * 0.43381 * 21 20 19 23 23 C 1.38240 * 120.00350 * 359.81773 * 22 21 20 24 24 C 1.38233 * 120.00270 * 99.99883 * 19 6 5 25 25 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47193 * 300.00190 * 1 2 3 27 27 H 1.09003 * 109.47150 * 60.00547 * 1 2 3 28 28 H 1.09004 * 109.47606 * 240.00293 * 2 1 3 29 29 H 1.08994 * 109.47328 * 119.99452 * 2 1 3 30 30 H 1.08996 * 109.47316 * 59.99885 * 3 2 1 31 31 H 1.09003 * 109.46736 * 299.99707 * 3 2 1 32 32 H 1.09003 * 109.46776 * 299.99339 * 4 3 2 33 33 H 1.08999 * 109.47876 * 59.99580 * 4 3 2 34 34 H 1.09003 * 109.46736 * 299.99363 * 5 4 3 35 35 H 1.08996 * 109.47316 * 59.99542 * 5 4 3 36 36 H 0.97001 * 120.00204 * 24.99699 * 8 6 5 37 37 H 0.97002 * 120.00464 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.99776 * 359.97438 * 20 19 6 39 39 H 1.07995 * 119.99986 * 180.27004 * 21 20 19 40 40 H 1.08003 * 119.99992 * 179.83250 * 22 21 20 41 41 H 1.07996 * 120.00149 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99802 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6098 2.8852 -0.0013 7 1 5.9733 2.2962 0.8408 8 7 6.0982 2.3009 -1.2528 9 6 7.3203 1.7344 -1.3003 10 8 8.0177 1.7078 -0.3036 11 6 7.8080 1.1501 -2.5507 12 1 7.1538 1.0847 -3.4075 13 6 9.1230 0.6759 -2.6359 14 7 9.8764 0.6438 -1.5687 15 14 9.7999 0.0892 -4.2751 16 1 10.5335 1.1998 -4.9337 17 1 10.7253 -1.0500 -4.0492 18 1 8.6791 -0.3485 -5.1454 19 6 6.1122 4.3006 0.1219 20 6 6.1518 5.1193 -0.9913 21 6 6.6085 6.4191 -0.8775 22 6 7.0339 6.8973 0.3477 23 6 6.9992 6.0771 1.4599 24 6 6.5385 4.7787 1.3468 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9336 0.9287 0.8892 33 1 3.9330 0.9289 -0.8908 34 1 3.7162 3.3986 -0.8914 35 1 3.7169 3.3993 0.8886 36 1 5.5421 2.3217 -2.0473 37 1 10.7874 0.3158 -1.6278 38 1 5.8232 4.7444 -1.9493 39 1 6.6353 7.0600 -1.7463 40 1 7.3933 7.9120 0.4361 41 1 7.3320 6.4506 2.4170 42 1 6.5113 4.1378 2.2158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274919389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:31 Heat of formation + Delta-G solvation = -67.422292 kcal Electronic energy + Delta-G solvation = -21027.411315 eV Core-core repulsion = 17970.013896 eV Total energy + Delta-G solvation = -3057.397419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63820 -39.00781 -37.41732 -35.65733 -34.53113 -32.60069 -31.90206 -31.62869 -28.93214 -27.80651 -25.12039 -23.48103 -22.64264 -22.30592 -21.77332 -20.93078 -19.18177 -17.75466 -17.47639 -16.81291 -16.29256 -16.21479 -15.93562 -15.29293 -14.92193 -14.70377 -14.61407 -14.37602 -14.18593 -14.02628 -13.67014 -13.45999 -13.22166 -12.92573 -12.80716 -12.64863 -12.55872 -12.32209 -12.09707 -11.96056 -11.85395 -11.76962 -11.67640 -11.34679 -11.33599 -10.91633 -9.84670 -9.75526 -9.54700 -9.37440 -8.27128 -6.81751 0.53092 0.57058 1.39032 1.40181 1.55535 2.24678 2.51353 2.90414 3.22322 3.59470 3.76228 4.02378 4.08072 4.10148 4.16941 4.24085 4.31009 4.33416 4.42354 4.51875 4.65746 4.75203 4.78467 4.85397 4.90507 4.93559 5.04468 5.12667 5.17924 5.19702 5.24595 5.27105 5.33960 5.41047 5.48484 5.55951 5.63374 5.64869 5.76668 5.93704 6.19549 6.27754 6.36534 6.89995 7.61197 8.54673 8.72227 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.006372 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.234378 B = 4393.429085 C = 6723.472268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.115 4.115 5 C -0.102 4.102 6 C 0.192 3.808 7 H 0.045 0.955 8 N -0.739 5.739 9 C 0.545 3.455 10 O -0.629 6.629 11 C -0.574 4.574 12 H 0.085 0.915 13 C 0.031 3.969 14 N -0.823 5.823 15 Si 0.993 3.007 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.248 1.248 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.134 4.134 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 7.165 0.616 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.146 4.146 4 C -0.153 4.153 5 C -0.140 4.140 6 C 0.086 3.914 7 H 0.064 0.936 8 N -0.393 5.393 9 C 0.349 3.651 10 O -0.515 6.515 11 C -0.611 4.611 12 H 0.103 0.897 13 C -0.184 4.184 14 N -0.452 5.452 15 Si 0.812 3.188 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.171 1.171 19 C -0.097 4.097 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.912 7.086 1.435 15.679 hybrid contribution 0.615 -0.548 -0.674 1.064 sum -13.297 6.538 0.761 14.838 Atomic orbital electron populations 1.21747 0.94713 1.01918 1.02159 1.21555 0.96748 0.96819 1.01553 1.21551 0.93518 0.97003 1.02577 1.21536 0.96432 0.95930 1.01352 1.21727 0.91021 0.97711 1.03500 1.19553 0.94530 0.88899 0.88426 0.93646 1.45800 1.18558 1.63185 1.11720 1.18498 0.79837 0.77593 0.89200 1.90554 1.58013 1.64270 1.38687 1.21414 0.98962 1.42778 0.97963 0.89696 1.26899 0.96838 0.93109 1.01511 1.70200 1.07921 1.35449 1.31649 0.85084 0.78708 0.78186 0.76790 1.18971 1.19868 1.17085 1.20569 0.98757 0.96258 0.94158 1.21068 1.00390 0.94246 0.97979 1.21431 0.99057 0.95540 0.98717 1.21438 1.00210 1.00888 0.92532 1.21384 0.99596 0.93520 1.00034 1.21190 1.00016 0.96765 0.97296 0.92468 0.92298 0.92315 0.92741 0.92732 0.91306 0.91232 0.93650 0.92983 0.90309 0.89959 0.77401 0.91801 0.86339 0.84058 0.83434 0.84047 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.13 -2.65 5.93 30.59 0.18 -2.47 16 3 C -0.11 -2.30 5.21 30.59 0.16 -2.14 16 4 C -0.11 -3.19 5.10 30.59 0.16 -3.03 16 5 C -0.10 -2.89 4.73 30.59 0.14 -2.75 16 6 C 0.19 7.51 2.17 44.24 0.10 7.60 16 7 H 0.05 2.11 7.44 -2.39 -0.02 2.09 16 8 N -0.74 -32.90 3.75 -450.40 -1.69 -34.59 16 9 C 0.55 31.67 7.70 86.36 0.66 32.33 16 10 O -0.63 -42.54 14.71 -4.30 -0.06 -42.60 16 11 C -0.57 -32.81 9.53 24.83 0.24 -32.57 16 12 H 0.08 4.36 7.85 -2.91 -0.02 4.33 16 13 C 0.03 1.77 5.49 85.30 0.47 2.24 16 14 N -0.82 -51.26 11.85 21.83 0.26 -51.00 16 15 Si 0.99 41.64 29.56 68.60 2.03 43.67 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 18 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 19 C -0.10 -3.65 4.91 -19.87 -0.10 -3.75 16 20 C -0.12 -4.16 9.33 22.27 0.21 -3.95 16 21 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 22 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 23 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 24 C -0.13 -4.82 9.67 22.27 0.22 -4.60 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.62 7.75 -2.39 -0.02 1.61 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.39 15.17 8.58 -92.71 -0.80 14.37 16 37 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 38 H 0.12 3.99 7.71 -2.91 -0.02 3.97 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.11 3.98 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -76.20 352.30 4.54 -71.67 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.19 Total: 38.41 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.82 Total: -25.55 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.43 Total: -85.59 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.06 Total: -42.60 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -76.20 4.54 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274919389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds