Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47441 * 2 1 4 4 C 1.53001 * 109.47257 * 120.00466 * 2 1 3 5 5 C 1.52998 * 109.47040 * 59.99927 * 4 2 1 6 6 C 1.52992 * 109.47013 * 299.99710 * 4 2 1 7 7 C 1.50705 * 109.46953 * 179.97438 * 4 2 1 8 8 O 1.21278 * 120.00072 * 0.02562 * 7 4 2 9 9 N 1.34779 * 119.99916 * 180.02562 * 7 4 2 10 10 C 1.39231 * 119.99894 * 184.29323 * 9 7 4 11 11 C 1.39478 * 119.83443 * 324.70779 * 10 9 7 12 12 C 1.36376 * 120.17243 * 180.29948 * 11 10 9 13 13 C 1.40878 * 119.81982 * 359.48022 * 12 11 10 14 14 C 1.41158 * 120.15613 * 180.24959 * 13 12 11 15 15 H 1.08009 * 119.99522 * 215.01235 * 14 13 12 16 16 C 1.39900 * 120.00488 * 35.01864 * 14 13 12 17 17 N 1.30870 * 119.99788 * 355.54235 * 16 14 13 18 18 Si 1.86801 * 120.00301 * 175.54079 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47060 * 210.00161 * 18 16 14 21 21 H 1.48503 * 109.46930 * 329.99985 * 18 16 14 22 22 C 1.40864 * 119.67601 * 0.52083 * 13 12 11 23 23 C 1.36374 * 119.82668 * 359.72969 * 22 13 12 24 24 H 1.09003 * 109.46702 * 299.99915 * 1 2 3 25 25 H 1.08993 * 109.46994 * 59.99491 * 1 2 3 26 26 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46702 * 240.00085 * 2 1 3 28 28 H 1.08998 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47262 * 300.00489 * 3 2 1 30 30 H 1.09003 * 109.47103 * 60.00331 * 3 2 1 31 31 H 1.09001 * 109.47027 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47064 * 299.99808 * 5 4 2 33 33 H 1.08995 * 109.47325 * 59.99911 * 5 4 2 34 34 H 1.09007 * 109.47267 * 300.00206 * 6 4 2 35 35 H 1.08998 * 109.47184 * 60.00135 * 6 4 2 36 36 H 1.09000 * 109.47457 * 180.02562 * 6 4 2 37 37 H 0.96998 * 119.99587 * 4.28725 * 9 7 4 38 38 H 1.07999 * 119.91803 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.09317 * 179.69780 * 12 11 10 40 40 H 0.97002 * 120.00233 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.08494 * 179.71067 * 22 13 12 42 42 H 1.07999 * 119.91307 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 1.5301 -0.0002 2.4984 7 6 3.5471 -0.7219 1.2488 8 8 4.1534 -0.1966 0.3393 9 7 4.2210 -1.3061 2.2593 10 6 5.6105 -1.2292 2.3055 11 6 6.3467 -1.2557 1.1212 12 6 7.7082 -1.1870 1.1588 13 6 8.3702 -1.0781 2.3976 14 6 9.7789 -1.0012 2.4445 15 1 10.3180 -1.4625 3.2587 16 6 10.4767 -0.3273 1.4364 17 7 9.8320 0.1562 0.4052 18 14 12.3286 -0.1177 1.5621 19 1 13.0025 -1.2714 0.9139 20 1 12.7320 1.1383 0.8802 21 1 12.7235 -0.0533 2.9922 22 6 7.6198 -1.0521 3.5894 23 6 6.2591 -1.1268 3.5360 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.8938 -2.6779 2.1388 32 1 0.4401 -2.1638 1.2491 33 1 1.8933 -2.6776 0.3591 34 1 1.8935 1.0275 2.4985 35 1 0.4402 -0.0002 2.4985 36 1 1.8938 -0.5138 3.3884 37 1 3.7380 -1.7800 2.9542 38 1 5.8375 -1.3352 0.1721 39 1 8.2772 -1.2124 0.2413 40 1 10.3157 0.6237 -0.2936 41 1 8.1207 -0.9735 4.5430 42 1 5.6824 -1.1066 4.4489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275935591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = -32.154640 kcal Electronic energy + Delta-G solvation = -21517.670481 eV Core-core repulsion = 18461.802382 eV Total energy + Delta-G solvation = -3055.868098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35746 -37.84087 -36.31101 -34.46162 -33.00129 -31.28483 -29.48241 -28.76346 -27.90000 -26.72042 -25.09444 -23.65781 -21.65296 -21.14289 -19.89821 -18.39287 -17.26336 -16.89720 -16.05432 -15.34035 -14.95038 -14.69810 -14.41818 -14.07206 -13.86237 -13.26075 -13.10283 -12.74283 -12.55121 -12.26337 -12.13525 -12.04054 -11.86745 -11.74715 -11.51992 -11.42197 -11.29988 -11.15052 -10.93275 -10.83784 -10.49773 -10.44039 -10.35169 -9.83855 -9.81897 -9.31308 -8.90733 -8.57570 -7.49392 -6.84647 -6.56642 -4.30409 2.62546 3.03542 3.11623 3.12396 3.16674 3.39525 3.77432 4.01081 4.60103 4.74142 4.82984 4.84251 5.22181 5.25582 5.32264 5.47229 5.52544 5.67801 5.70934 5.73546 5.79004 5.89811 5.91417 5.94930 6.03165 6.15924 6.19268 6.26682 6.41651 6.49248 6.67215 6.90304 7.04503 7.07747 7.23650 7.33657 7.66650 7.71968 8.02722 8.12216 8.25097 8.37887 8.70164 8.84791 8.96344 9.05511 10.34431 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.003994 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.319422 B = 7009.496279 C = 7453.175018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C -0.162 4.162 4 C -0.077 4.077 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.522 6.522 9 N -0.652 5.652 10 C 0.007 3.993 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.808 5.808 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.204 4.204 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.278 0.722 41 H 0.096 0.904 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -1.778 1.717 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.219 4.219 4 C -0.080 4.080 5 C -0.200 4.200 6 C -0.200 4.200 7 C 0.295 3.705 8 O -0.398 6.398 9 N -0.295 5.295 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.435 5.435 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.224 4.224 23 C -0.136 4.136 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.226 0.774 38 H 0.125 0.875 39 H 0.147 0.853 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.880 -1.249 0.843 14.956 hybrid contribution 0.571 0.037 0.447 0.726 sum -14.308 -1.212 1.291 14.418 Atomic orbital electron populations 1.21985 0.95437 1.01555 1.01719 1.20855 0.94667 0.96885 0.96368 1.22139 1.04496 0.94740 1.00489 1.20803 0.92194 0.97242 0.97795 1.21918 1.01595 0.94027 1.02453 1.21949 1.01430 1.01025 0.95628 1.20449 0.89138 0.78294 0.82612 1.90632 1.69656 1.44322 1.35207 1.43028 1.06178 1.53601 1.26710 1.17308 0.80500 1.16265 0.94415 1.20641 0.94364 1.00518 0.95865 1.21307 0.92320 1.03352 0.99410 1.17716 0.93494 0.88286 0.90795 1.19473 0.91681 1.31104 1.07268 0.90704 1.25880 1.00633 0.94032 0.94038 1.69790 1.37425 1.28645 1.07681 0.86218 0.82152 0.78315 0.79382 1.19545 1.20316 1.18783 1.20683 0.92491 1.11436 0.97761 1.20074 0.94912 1.04321 0.94245 0.92488 0.92750 0.92587 0.90746 0.89465 0.93427 0.93372 0.92286 0.91363 0.92072 0.91702 0.91455 0.92385 0.77391 0.87493 0.85265 0.91117 0.88611 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.49 37.16 0.32 -1.09 16 2 C -0.07 -0.86 1.92 -90.62 -0.17 -1.03 16 3 C -0.16 -2.23 8.52 37.16 0.32 -1.92 16 4 C -0.08 -0.96 0.43 -155.66 -0.07 -1.03 16 5 C -0.14 -1.46 8.01 37.16 0.30 -1.16 16 6 C -0.14 -1.52 7.67 37.15 0.28 -1.24 16 7 C 0.51 8.89 6.02 -10.98 -0.07 8.82 16 8 O -0.52 -11.31 11.08 5.56 0.06 -11.24 16 9 N -0.65 -11.50 5.08 -9.74 -0.05 -11.55 16 10 C 0.01 0.16 6.31 -83.58 -0.53 -0.36 16 11 C -0.09 -2.36 8.61 -39.79 -0.34 -2.70 16 12 C -0.14 -3.90 8.61 -39.25 -0.34 -4.24 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 15 H 0.07 1.92 7.85 -52.48 -0.41 1.51 16 16 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -21.83 10.61 55.55 0.59 -21.24 16 18 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 22 C -0.20 -4.97 9.74 -39.26 -0.38 -5.35 16 23 C -0.12 -2.54 9.90 -39.79 -0.39 -2.93 16 24 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 27 H 0.07 1.04 8.10 -51.93 -0.42 0.61 16 28 H 0.09 1.53 5.51 -51.93 -0.29 1.25 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 32 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 35 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 36 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 37 H 0.39 5.50 7.67 -40.82 -0.31 5.19 16 38 H 0.11 2.70 6.22 -52.49 -0.33 2.38 16 39 H 0.13 3.67 6.15 -52.49 -0.32 3.35 16 40 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -29.93 325.93 -7.73 -37.67 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.12 Total: 10.46 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.10 Total: -23.31 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.54 Total: -32.79 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.93 -7.73 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275935591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.514 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds