Wall clock time and date at job start Mon Mar 30 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47441 * 2 1 4 4 C 1.53001 * 109.47257 * 120.00466 * 2 1 3 5 5 C 1.52998 * 109.47040 * 59.99927 * 4 2 1 6 6 C 1.52992 * 109.47013 * 299.99710 * 4 2 1 7 7 C 1.50705 * 109.46953 * 179.97438 * 4 2 1 8 8 O 1.21278 * 120.00072 * 0.02562 * 7 4 2 9 9 N 1.34779 * 119.99916 * 180.02562 * 7 4 2 10 10 C 1.39231 * 119.99894 * 184.29323 * 9 7 4 11 11 C 1.39478 * 119.83443 * 324.70779 * 10 9 7 12 12 C 1.36376 * 120.17243 * 180.29948 * 11 10 9 13 13 C 1.40878 * 119.81982 * 359.48022 * 12 11 10 14 14 C 1.41158 * 120.15613 * 180.24959 * 13 12 11 15 15 H 1.08009 * 119.99522 * 215.01235 * 14 13 12 16 16 C 1.39900 * 120.00488 * 35.01864 * 14 13 12 17 17 N 1.30870 * 119.99788 * 355.54235 * 16 14 13 18 18 Si 1.86801 * 120.00301 * 175.54079 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47060 * 210.00161 * 18 16 14 21 21 H 1.48503 * 109.46930 * 329.99985 * 18 16 14 22 22 C 1.40864 * 119.67601 * 0.52083 * 13 12 11 23 23 C 1.36374 * 119.82668 * 359.72969 * 22 13 12 24 24 H 1.09003 * 109.46702 * 299.99915 * 1 2 3 25 25 H 1.08993 * 109.46994 * 59.99491 * 1 2 3 26 26 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46702 * 240.00085 * 2 1 3 28 28 H 1.08998 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47262 * 300.00489 * 3 2 1 30 30 H 1.09003 * 109.47103 * 60.00331 * 3 2 1 31 31 H 1.09001 * 109.47027 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47064 * 299.99808 * 5 4 2 33 33 H 1.08995 * 109.47325 * 59.99911 * 5 4 2 34 34 H 1.09007 * 109.47267 * 300.00206 * 6 4 2 35 35 H 1.08998 * 109.47184 * 60.00135 * 6 4 2 36 36 H 1.09000 * 109.47457 * 180.02562 * 6 4 2 37 37 H 0.96998 * 119.99587 * 4.28725 * 9 7 4 38 38 H 1.07999 * 119.91803 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.09317 * 179.69780 * 12 11 10 40 40 H 0.97002 * 120.00233 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.08494 * 179.71067 * 22 13 12 42 42 H 1.07999 * 119.91307 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 1.5301 -0.0002 2.4984 7 6 3.5471 -0.7219 1.2488 8 8 4.1534 -0.1966 0.3393 9 7 4.2210 -1.3061 2.2593 10 6 5.6105 -1.2292 2.3055 11 6 6.3467 -1.2557 1.1212 12 6 7.7082 -1.1870 1.1588 13 6 8.3702 -1.0781 2.3976 14 6 9.7789 -1.0012 2.4445 15 1 10.3180 -1.4625 3.2587 16 6 10.4767 -0.3273 1.4364 17 7 9.8320 0.1562 0.4052 18 14 12.3286 -0.1177 1.5621 19 1 13.0025 -1.2714 0.9139 20 1 12.7320 1.1383 0.8802 21 1 12.7235 -0.0533 2.9922 22 6 7.6198 -1.0521 3.5894 23 6 6.2591 -1.1268 3.5360 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.8938 -2.6779 2.1388 32 1 0.4401 -2.1638 1.2491 33 1 1.8933 -2.6776 0.3591 34 1 1.8935 1.0275 2.4985 35 1 0.4402 -0.0002 2.4985 36 1 1.8938 -0.5138 3.3884 37 1 3.7380 -1.7800 2.9542 38 1 5.8375 -1.3352 0.1721 39 1 8.2772 -1.2124 0.2413 40 1 10.3157 0.6237 -0.2936 41 1 8.1207 -0.9735 4.5430 42 1 5.6824 -1.1066 4.4489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275935591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:47 Heat of formation + Delta-G solvation = -49.144505 kcal Electronic energy + Delta-G solvation = -21518.407217 eV Core-core repulsion = 18461.802382 eV Total energy + Delta-G solvation = -3056.604834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73035 -39.51099 -37.68890 -36.18135 -34.77655 -32.42507 -31.42512 -30.56818 -28.76331 -27.61943 -26.87223 -24.85037 -23.30808 -22.94755 -21.46779 -19.71044 -19.22451 -18.26478 -17.51415 -17.07165 -16.25323 -16.10614 -15.76067 -15.38539 -15.24437 -14.84874 -14.53730 -14.06478 -13.95074 -13.82106 -13.49733 -13.34886 -13.07070 -12.99067 -12.86242 -12.76792 -12.68408 -12.52924 -12.32572 -12.13045 -11.96969 -11.69350 -11.62648 -11.41865 -11.32314 -11.13958 -10.64708 -10.18809 -9.45290 -8.73194 -8.49869 -6.33181 0.82298 1.12330 1.37905 1.44554 1.53214 1.85491 2.23014 2.38391 2.81897 3.60496 3.68473 3.79325 3.88582 4.20966 4.37104 4.42957 4.44743 4.48102 4.59909 4.77780 4.83595 4.88140 4.91262 4.95571 4.99395 5.09990 5.12535 5.14416 5.15784 5.18679 5.29620 5.33576 5.37616 5.44358 5.57007 5.64115 5.70931 5.88119 6.09633 6.15742 6.35853 6.70602 6.76795 6.95944 7.02486 7.47618 8.43205 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.003994 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.319422 B = 7009.496279 C = 7453.175018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.160 4.160 4 C -0.067 4.067 5 C -0.141 4.141 6 C -0.142 4.142 7 C 0.501 3.499 8 O -0.569 6.569 9 N -0.644 5.644 10 C 0.023 3.977 11 C -0.109 4.109 12 C -0.168 4.168 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.022 3.978 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.209 4.209 23 C -0.110 4.110 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.281 0.719 41 H 0.112 0.888 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -2.152 3.902 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.217 4.217 4 C -0.070 4.070 5 C -0.198 4.198 6 C -0.199 4.199 7 C 0.291 3.709 8 O -0.448 6.448 9 N -0.289 5.289 10 C -0.070 4.070 11 C -0.130 4.130 12 C -0.188 4.188 13 C 0.063 3.937 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.477 5.477 18 Si 0.811 3.189 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.229 4.229 23 C -0.130 4.130 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.376 -1.649 3.057 17.720 hybrid contribution 1.160 0.155 -0.256 1.198 sum -16.216 -1.494 2.801 16.524 Atomic orbital electron populations 1.21933 0.92183 1.03012 1.02754 1.20882 0.97211 0.95394 0.95506 1.22078 1.01562 0.96432 1.01609 1.20835 0.87755 0.99417 0.99008 1.21963 1.03525 0.91842 1.02490 1.21997 1.03387 0.99852 0.94662 1.21571 0.91494 0.76645 0.81227 1.90640 1.71232 1.45968 1.36940 1.42972 1.04259 1.54001 1.27716 1.17388 0.82797 1.13318 0.93534 1.20644 0.93937 1.01560 0.96811 1.21168 0.93141 1.05607 0.98928 1.18047 0.94331 0.89701 0.91630 1.19772 0.92210 1.32561 1.08373 0.90231 1.26849 1.05739 0.93101 0.93187 1.69919 1.39483 1.29669 1.08621 0.85073 0.75592 0.78467 0.79724 1.18661 1.19782 1.17844 1.20959 0.93680 1.10759 0.97460 1.20445 0.94381 1.02434 0.95695 0.90901 0.92356 0.90878 0.93146 0.93887 0.92683 0.91896 0.90947 0.88235 0.93471 0.93214 0.88306 0.91053 0.74748 0.88737 0.87936 0.90818 0.86956 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.49 71.98 0.61 -1.54 16 2 C -0.07 -1.67 1.92 -10.79 -0.02 -1.69 16 3 C -0.16 -4.39 8.52 71.98 0.61 -3.78 16 4 C -0.07 -1.52 0.43 -52.93 -0.02 -1.54 16 5 C -0.14 -2.40 8.01 71.98 0.58 -1.82 16 6 C -0.14 -2.46 7.67 71.98 0.55 -1.91 16 7 C 0.50 17.33 6.02 87.66 0.53 17.85 16 8 O -0.57 -25.73 11.08 -3.02 -0.03 -25.77 16 9 N -0.64 -21.71 5.08 -303.12 -1.54 -23.25 16 10 C 0.02 1.03 6.31 38.56 0.24 1.27 16 11 C -0.11 -5.75 8.61 22.13 0.19 -5.56 16 12 C -0.17 -9.69 8.61 22.48 0.19 -9.50 16 13 C 0.07 3.66 5.55 -21.27 -0.12 3.55 16 14 C -0.50 -27.83 9.02 23.39 0.21 -27.62 16 15 H 0.08 4.19 7.85 -2.91 -0.02 4.16 16 16 C 0.02 1.19 5.42 85.24 0.46 1.65 16 17 N -0.85 -48.30 10.61 21.82 0.23 -48.06 16 18 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 22 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 23 C -0.11 -4.63 9.90 22.13 0.22 -4.41 16 24 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.88 6.43 -2.39 -0.02 0.87 16 27 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 28 H 0.04 1.58 5.51 -2.39 -0.01 1.57 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.50 6.43 -2.39 -0.02 1.48 16 31 H 0.07 1.05 7.47 -2.39 -0.02 1.03 16 32 H 0.10 1.12 6.43 -2.39 -0.02 1.10 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.03 6.43 -2.38 -0.02 1.02 16 35 H 0.10 1.14 6.43 -2.39 -0.02 1.13 16 36 H 0.07 1.07 7.67 -2.39 -0.02 1.05 16 37 H 0.41 10.24 7.67 -92.71 -0.71 9.53 16 38 H 0.09 5.11 6.22 -2.91 -0.02 5.10 16 39 H 0.10 6.34 6.15 -2.91 -0.02 6.32 16 40 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -70.80 325.93 5.46 -65.34 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.32 Total: 34.23 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 4.46 Total: -44.96 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.31 Total: -71.32 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.03 Total: -25.77 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -70.80 5.46 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275935591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.200 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds