Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99747 * 0.02562 * 12 10 9 14 14 C 1.52998 * 109.47078 * 90.00208 * 13 12 10 15 15 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 16 16 C 1.50691 * 109.47347 * 89.99938 * 15 12 10 17 17 H 1.08002 * 119.99992 * 0.02562 * 16 15 12 18 18 C 1.37884 * 120.00142 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47595 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47487 * 120.00006 * 20 18 16 23 23 H 1.48511 * 109.46963 * 239.99698 * 20 18 16 24 24 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 28 28 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 29 29 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 31 31 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 34 34 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 35 35 H 1.09007 * 109.47053 * 209.99941 * 13 12 10 36 36 H 1.08993 * 109.46967 * 329.99605 * 13 12 10 37 37 H 1.09001 * 109.47390 * 59.99710 * 14 13 12 38 38 H 1.08997 * 109.47143 * 179.97438 * 14 13 12 39 39 H 1.09007 * 109.46961 * 299.99790 * 14 13 12 40 40 H 1.09001 * 109.47065 * 210.00064 * 15 12 10 41 41 H 1.09003 * 109.46871 * 329.99418 * 15 12 10 42 42 H 0.96994 * 119.99714 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 1.6690 -0.0346 4.9141 14 6 0.7654 -1.1816 4.4573 15 6 4.0621 -0.8247 4.6177 16 6 4.9202 0.0472 5.4976 17 1 4.6371 1.0730 5.6821 18 6 6.0669 -0.4646 6.0671 19 7 6.4114 -1.7139 5.8427 20 14 7.1303 0.6159 7.1583 21 1 6.5281 1.9702 7.2516 22 1 7.2161 0.0174 8.5147 23 1 8.4924 0.7194 6.5758 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2578 1.5015 -2.1247 30 1 3.0694 3.8259 -2.1255 31 1 3.3047 5.0489 -0.0011 32 1 2.7284 3.9470 2.1240 33 1 1.5501 2.1866 3.2337 34 1 0.9680 0.7630 2.3376 35 1 1.8993 -0.1531 5.9730 36 1 1.1578 0.9152 4.7576 37 1 1.2767 -2.1314 4.6138 38 1 -0.1592 -1.1677 5.0343 39 1 0.5351 -1.0631 3.3984 40 1 3.7109 -1.6839 5.1892 41 1 4.6480 -1.1698 3.7658 42 1 7.2179 -2.0740 6.2436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276216811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -47.828159 kcal Electronic energy + Delta-G solvation = -21668.869084 eV Core-core repulsion = 18612.321331 eV Total energy + Delta-G solvation = -3056.547753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24202 -39.81667 -36.91024 -35.23586 -34.89388 -33.44144 -31.58517 -30.41622 -29.61779 -27.99077 -25.03683 -24.64732 -24.08250 -22.80313 -21.44909 -19.82644 -18.63467 -17.89520 -17.53372 -16.99925 -16.90466 -16.21819 -15.89448 -15.57818 -14.80491 -14.70079 -14.49200 -14.38819 -14.30741 -13.98524 -13.82432 -13.55856 -13.28944 -13.10306 -12.97412 -12.78997 -12.69864 -12.61220 -12.49636 -12.16726 -12.11400 -11.86866 -11.69895 -11.63909 -11.52213 -10.65962 -10.62851 -9.65121 -9.43502 -9.40962 -8.23296 -6.38089 0.47492 0.54782 1.34433 1.37089 1.48816 1.87693 2.31220 2.45658 2.93772 3.06122 3.71415 3.87999 3.92153 4.03064 4.11004 4.18711 4.31483 4.34078 4.45430 4.50424 4.53255 4.63305 4.67656 4.75621 4.78538 4.95203 4.99923 5.05305 5.06545 5.10024 5.17590 5.23182 5.27616 5.40144 5.42304 5.58036 5.62846 5.64779 5.79843 5.87650 6.06680 6.18751 6.70212 6.83105 7.28242 7.53051 8.83949 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.005253 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.665586 B = 5328.655131 C = 6155.762469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.125 4.125 8 C -0.078 4.078 9 C -0.093 4.093 10 C 0.502 3.498 11 O -0.591 6.591 12 N -0.605 5.605 13 C 0.097 3.903 14 C -0.161 4.161 15 C 0.263 3.737 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.283 1.283 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.021 0.979 41 H -0.007 1.007 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 7.727 -9.605 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.079 4.079 9 C -0.132 4.132 10 C 0.291 3.709 11 O -0.472 6.472 12 N -0.336 5.336 13 C -0.025 4.025 14 C -0.220 4.220 15 C 0.142 3.858 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.209 1.209 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.011 0.989 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.669 7.563 -9.863 19.999 hybrid contribution 1.298 0.030 0.744 1.496 sum -14.371 7.592 -9.119 18.637 Atomic orbital electron populations 1.21723 0.92425 1.02662 1.02708 1.20568 0.97865 0.92103 1.02089 1.19928 0.98803 0.96251 0.93008 1.21271 1.00166 0.95767 0.97656 1.21424 0.99236 0.94708 0.98873 1.21360 1.00476 1.01020 0.92332 1.21237 0.99123 0.94839 0.99106 1.19379 1.00377 0.94401 0.93718 1.20803 0.96420 1.00100 0.95850 1.21106 0.89597 0.79731 0.80459 1.90652 1.33901 1.64569 1.58053 1.48295 1.14816 1.48283 1.22229 1.21770 0.83706 1.00802 0.96198 1.22163 0.99903 0.97661 1.02226 1.18665 0.83612 0.90744 0.92792 1.21741 1.08735 0.98084 1.29351 0.92955 1.25869 0.98675 0.96510 0.98161 1.70062 1.25874 1.15431 1.45565 0.85371 0.78101 0.78881 0.78466 1.19093 1.19254 1.20851 0.91195 0.92084 0.91578 0.90799 0.93506 0.84415 0.83663 0.84173 0.85899 0.86507 0.85975 0.91006 0.88153 0.94358 0.88474 0.92059 0.96099 0.98879 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.72 71.98 0.70 -1.85 16 2 C -0.09 -2.31 5.38 29.85 0.16 -2.14 16 3 C -0.08 -2.31 5.13 -19.87 -0.10 -2.41 16 4 C -0.13 -3.33 9.68 22.27 0.22 -3.11 16 5 C -0.12 -2.95 10.05 22.27 0.22 -2.72 16 6 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 7 C -0.12 -3.67 9.68 22.27 0.22 -3.45 16 8 C -0.08 -2.42 4.37 -19.87 -0.09 -2.51 16 9 C -0.09 -2.75 3.71 29.10 0.11 -2.64 16 10 C 0.50 21.46 6.89 87.66 0.60 22.07 16 11 O -0.59 -31.91 15.61 -3.04 -0.05 -31.96 16 12 N -0.60 -26.12 2.46 -826.16 -2.03 -28.15 16 13 C 0.10 2.98 5.93 86.38 0.51 3.49 16 14 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 15 C 0.26 14.59 5.16 85.63 0.44 15.03 16 16 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.01 0.39 5.46 84.66 0.46 0.85 16 19 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 20 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.06 6.83 -2.39 -0.02 1.05 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.80 8.05 -2.38 -0.02 1.78 16 28 H 0.05 1.47 6.41 -2.39 -0.02 1.45 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.12 2.88 7.31 -2.39 -0.02 2.86 16 34 H 0.12 2.95 4.68 -2.38 -0.01 2.94 16 35 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 36 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.38 7.22 -2.38 -0.02 1.36 16 40 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 41 H -0.01 -0.45 7.42 -2.39 -0.02 -0.46 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.33 344.48 5.88 -71.45 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.99 Total: 15.39 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.66 Total: -17.46 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.74 Total: -85.22 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.33 5.88 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276216811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.625 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds