Wall clock time and date at job start Mon Mar 30 2020 02:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46949 * 2 1 4 4 C 1.38230 * 119.99842 * 89.99666 * 3 2 1 5 5 C 1.38241 * 119.99993 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99607 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99740 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.50830 * 25.00020 * 7 6 5 9 9 C 1.53098 * 109.53918 * 264.89039 * 7 6 5 10 10 N 1.47016 * 109.25721 * 183.19566 * 9 7 6 11 11 C 1.46903 * 111.00220 * 182.39206 * 10 9 7 12 12 C 1.50699 * 109.47237 * 170.31621 * 11 10 9 13 13 H 1.08002 * 120.00038 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99880 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99929 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99795 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47526 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47032 * 120.00307 * 16 14 12 19 19 H 1.48503 * 109.47205 * 240.00160 * 16 14 12 20 20 C 1.47012 * 110.75072 * 58.61755 * 10 9 7 21 21 C 1.53094 * 109.25795 * 301.38161 * 20 10 9 22 22 O 1.43011 * 109.25780 * 56.85277 * 21 20 10 23 23 C 1.38232 * 120.00167 * 0.25444 * 6 5 4 24 24 C 1.38235 * 119.99728 * 270.02383 * 3 2 1 25 25 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47394 * 299.99582 * 1 2 3 27 27 H 1.08997 * 109.46926 * 60.00741 * 1 2 3 28 28 H 1.09000 * 109.47457 * 239.99941 * 2 1 3 29 29 H 1.09000 * 109.47484 * 119.99742 * 2 1 3 30 30 H 1.07995 * 120.00510 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00077 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.50862 * 303.12698 * 9 7 6 33 33 H 1.09003 * 109.50840 * 63.26433 * 9 7 6 34 34 H 1.09000 * 109.47228 * 290.32184 * 11 10 9 35 35 H 1.09005 * 109.46883 * 50.31591 * 11 10 9 36 36 H 0.97002 * 119.99979 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.50656 * 181.44976 * 20 10 9 38 38 H 1.08994 * 109.54815 * 61.34408 * 20 10 9 39 39 H 1.09000 * 109.50980 * 296.91481 * 21 20 10 40 40 H 1.09006 * 109.54499 * 176.81139 * 21 20 10 41 41 H 1.08004 * 119.99895 * 179.72649 * 23 6 5 42 42 H 1.07992 * 120.00479 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3757 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 1 3.9872 5.6466 0.9312 9 6 2.2723 6.4099 -0.1286 10 7 2.7743 7.7896 -0.2051 11 6 1.6651 8.7504 -0.2725 12 6 2.2017 10.1493 -0.1103 13 1 3.2608 10.3087 0.0285 14 6 1.3406 11.2257 -0.1402 15 7 0.0509 11.0315 -0.3097 16 14 2.0058 12.9596 0.0601 17 1 3.4796 12.9075 0.2342 18 1 1.6786 13.7580 -1.1486 19 1 1.3880 13.5921 1.2533 20 6 3.6815 7.9511 -1.3506 21 6 4.8515 6.9739 -1.2098 22 8 4.3432 5.6412 -1.1055 23 6 2.7185 3.3776 -1.1971 24 6 2.2622 2.0727 -1.1972 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0830 1.5634 2.1324 31 1 2.9042 3.8847 2.1324 32 1 1.7104 6.1764 -1.0329 33 1 1.6233 6.3064 0.7410 34 1 1.1661 8.6622 -1.2375 35 1 0.9529 8.5396 0.5254 36 1 -0.5550 11.7888 -0.3303 37 1 4.0611 8.9726 -1.3731 38 1 3.1425 7.7428 -2.2748 39 1 5.4228 7.2167 -0.3138 40 1 5.4973 7.0497 -2.0847 41 1 2.8943 3.8882 -2.1325 42 1 2.0823 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276870113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:20 Heat of formation + Delta-G solvation = -29.085019 kcal Electronic energy + Delta-G solvation = -20992.061013 eV Core-core repulsion = 17936.326023 eV Total energy + Delta-G solvation = -3055.734990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88290 -38.57410 -35.24961 -34.46017 -32.48446 -31.40880 -30.87126 -28.76721 -27.95630 -25.40575 -24.00465 -23.00611 -22.62673 -21.72894 -20.41074 -19.66206 -16.65873 -16.44888 -16.03981 -15.57683 -15.28191 -14.73736 -14.46476 -14.32563 -14.12038 -13.92339 -13.66374 -13.55667 -13.19898 -12.90748 -12.75341 -12.11644 -12.10199 -11.74690 -11.40276 -11.29239 -11.16205 -10.93853 -10.84068 -10.80674 -10.76845 -10.55497 -10.21741 -9.91457 -9.40234 -9.11578 -8.84654 -8.47694 -8.40680 -7.35230 -6.06378 -4.08315 1.34377 1.48202 3.28575 3.36024 3.40497 3.72509 4.06085 4.38543 4.64572 4.76002 4.79588 5.04743 5.09759 5.14569 5.20047 5.29302 5.39120 5.39822 5.47587 5.54729 5.60106 5.66712 5.70773 5.77671 5.84507 5.90903 5.98529 6.00178 6.08958 6.14083 6.30855 6.44051 6.50333 6.56414 6.62952 6.73426 7.05329 7.19139 7.28250 7.50927 7.73625 8.00477 8.10787 8.46892 8.99013 9.56119 11.04572 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.003559 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.781435 B = 7865.454915 C = 8399.900648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.106 4.106 6 C -0.077 4.077 7 C 0.135 3.865 8 H 0.072 0.928 9 C 0.032 3.968 10 N -0.535 5.535 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.027 3.973 21 C 0.064 3.936 22 O -0.385 6.385 23 C -0.089 4.089 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.032 0.968 33 H 0.078 0.922 34 H -0.008 1.008 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -19.208 0.084 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.124 4.124 6 C -0.077 4.077 7 C 0.077 3.923 8 H 0.090 0.910 9 C -0.097 4.097 10 N -0.260 5.260 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.102 4.102 21 C -0.013 4.013 22 O -0.304 6.304 23 C -0.107 4.107 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.010 0.990 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.898 -19.145 0.372 19.765 hybrid contribution -0.404 1.185 -0.485 1.342 sum 4.494 -17.961 -0.113 18.515 Atomic orbital electron populations 1.21753 0.94787 1.01488 1.02427 1.20522 0.96145 0.92821 1.02566 1.19874 0.99421 0.96161 0.93316 1.20910 1.00780 0.94750 0.97408 1.20952 0.99423 0.94565 0.97427 1.19664 0.99710 0.94745 0.93609 1.20899 0.90634 0.90488 0.90246 0.91046 1.22638 0.95650 0.90201 1.01164 1.62375 1.20686 1.02204 1.40758 1.19747 0.87570 0.89944 0.95907 1.21170 0.94282 0.90167 1.49082 0.91783 1.25001 0.94808 0.99449 0.95377 1.69973 1.02334 1.31090 1.50306 0.86431 0.79141 0.84150 0.77638 1.19635 1.21088 1.20963 1.22628 0.94464 1.00576 0.92482 1.22738 0.95576 0.81500 1.01463 1.87886 1.63425 1.29880 1.49249 1.21010 0.97192 0.94256 0.98230 1.21002 1.00668 0.94977 0.97381 0.92585 0.92474 0.92493 0.91234 0.91227 0.86199 0.85826 0.94961 0.90400 0.98997 0.95060 0.92918 0.88870 0.95216 0.92661 0.89103 0.85610 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.09 -0.98 5.13 -104.62 -0.54 -1.51 16 4 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 5 C -0.11 -1.36 9.68 -39.58 -0.38 -1.75 16 6 C -0.08 -1.13 5.01 -104.62 -0.52 -1.65 16 7 C 0.14 2.23 3.01 -27.83 -0.08 2.14 16 8 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 9 C 0.03 0.62 4.91 -3.71 -0.02 0.60 16 10 N -0.53 -11.76 4.72 -235.75 -1.11 -12.87 16 11 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 12 C -0.51 -14.24 8.48 -34.44 -0.29 -14.53 16 13 H 0.06 1.76 7.11 -52.49 -0.37 1.39 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.03 0.53 5.46 -3.71 -0.02 0.51 16 21 C 0.06 1.03 7.01 37.21 0.26 1.30 16 22 O -0.39 -6.54 9.62 -35.23 -0.34 -6.88 16 23 C -0.09 -1.25 9.35 -39.58 -0.37 -1.62 16 24 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 34 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 35 H 0.03 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.09 1.91 6.80 -51.93 -0.35 1.56 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.13 1.80 7.64 -52.48 -0.40 1.40 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -30.44 341.59 -10.25 -40.70 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.01 Total: -1.35 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.66 Total: -15.28 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.38 Total: -38.84 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.34 Total: -6.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.44 -10.25 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276870113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.610 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds