Wall clock time and date at job start Mon Mar 30 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46949 * 2 1 4 4 C 1.38230 * 119.99842 * 89.99666 * 3 2 1 5 5 C 1.38241 * 119.99993 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99607 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99740 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.50830 * 25.00020 * 7 6 5 9 9 C 1.53098 * 109.53918 * 264.89039 * 7 6 5 10 10 N 1.47016 * 109.25721 * 183.19566 * 9 7 6 11 11 C 1.46903 * 111.00220 * 182.39206 * 10 9 7 12 12 C 1.50699 * 109.47237 * 170.31621 * 11 10 9 13 13 H 1.08002 * 120.00038 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99880 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99929 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99795 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47526 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47032 * 120.00307 * 16 14 12 19 19 H 1.48503 * 109.47205 * 240.00160 * 16 14 12 20 20 C 1.47012 * 110.75072 * 58.61755 * 10 9 7 21 21 C 1.53094 * 109.25795 * 301.38161 * 20 10 9 22 22 O 1.43011 * 109.25780 * 56.85277 * 21 20 10 23 23 C 1.38232 * 120.00167 * 0.25444 * 6 5 4 24 24 C 1.38235 * 119.99728 * 270.02383 * 3 2 1 25 25 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47394 * 299.99582 * 1 2 3 27 27 H 1.08997 * 109.46926 * 60.00741 * 1 2 3 28 28 H 1.09000 * 109.47457 * 239.99941 * 2 1 3 29 29 H 1.09000 * 109.47484 * 119.99742 * 2 1 3 30 30 H 1.07995 * 120.00510 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00077 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.50862 * 303.12698 * 9 7 6 33 33 H 1.09003 * 109.50840 * 63.26433 * 9 7 6 34 34 H 1.09000 * 109.47228 * 290.32184 * 11 10 9 35 35 H 1.09005 * 109.46883 * 50.31591 * 11 10 9 36 36 H 0.97002 * 119.99979 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.50656 * 181.44976 * 20 10 9 38 38 H 1.08994 * 109.54815 * 61.34408 * 20 10 9 39 39 H 1.09000 * 109.50980 * 296.91481 * 21 20 10 40 40 H 1.09006 * 109.54499 * 176.81139 * 21 20 10 41 41 H 1.08004 * 119.99895 * 179.72649 * 23 6 5 42 42 H 1.07992 * 120.00479 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3757 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0000 8 1 3.9872 5.6466 0.9312 9 6 2.2723 6.4099 -0.1286 10 7 2.7743 7.7896 -0.2051 11 6 1.6651 8.7504 -0.2725 12 6 2.2017 10.1493 -0.1103 13 1 3.2608 10.3087 0.0285 14 6 1.3406 11.2257 -0.1402 15 7 0.0509 11.0315 -0.3097 16 14 2.0058 12.9596 0.0601 17 1 3.4796 12.9075 0.2342 18 1 1.6786 13.7580 -1.1486 19 1 1.3880 13.5921 1.2533 20 6 3.6815 7.9511 -1.3506 21 6 4.8515 6.9739 -1.2098 22 8 4.3432 5.6412 -1.1055 23 6 2.7185 3.3776 -1.1971 24 6 2.2622 2.0727 -1.1972 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0830 1.5634 2.1324 31 1 2.9042 3.8847 2.1324 32 1 1.7104 6.1764 -1.0329 33 1 1.6233 6.3064 0.7410 34 1 1.1661 8.6622 -1.2375 35 1 0.9529 8.5396 0.5254 36 1 -0.5550 11.7888 -0.3303 37 1 4.0611 8.9726 -1.3731 38 1 3.1425 7.7428 -2.2748 39 1 5.4228 7.2167 -0.3138 40 1 5.4973 7.0497 -2.0847 41 1 2.8943 3.8882 -2.1325 42 1 2.0823 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276870113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:19 Heat of formation + Delta-G solvation = -46.817942 kcal Electronic energy + Delta-G solvation = -20992.829970 eV Core-core repulsion = 17936.326023 eV Total energy + Delta-G solvation = -3056.503947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09317 -39.79654 -36.94051 -35.38655 -34.58833 -32.55870 -31.83355 -30.24974 -29.53455 -27.01191 -25.32741 -24.39025 -23.62395 -23.22264 -21.55250 -21.11238 -18.58510 -17.85488 -17.34233 -16.92629 -16.42929 -16.28768 -15.95121 -15.77688 -15.53851 -15.19397 -14.73632 -14.49615 -14.43244 -14.15147 -14.09027 -13.73240 -13.33148 -13.15299 -12.77355 -12.69863 -12.64407 -12.44047 -12.36606 -12.11583 -12.08653 -11.73981 -11.65007 -11.44676 -11.35520 -10.68746 -10.60996 -9.81518 -9.45579 -9.20436 -8.24621 -6.35816 0.35083 0.51290 1.40141 1.40704 1.54588 2.37411 2.63208 2.87246 3.07129 3.15128 3.79449 3.90906 3.93160 4.00632 4.08087 4.15810 4.19038 4.27353 4.37724 4.45001 4.54388 4.59622 4.60451 4.69181 4.73066 4.80101 4.90547 4.93017 5.08062 5.10213 5.11074 5.12451 5.16652 5.23061 5.41228 5.51064 5.58728 5.65877 5.73265 5.95118 6.10284 6.13866 6.19815 6.46218 6.79253 7.34254 8.87219 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.003559 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.781435 B = 7865.454915 C = 8399.900648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.100 4.100 7 C 0.146 3.854 8 H 0.076 0.924 9 C 0.036 3.964 10 N -0.540 5.540 11 C 0.208 3.792 12 C -0.524 4.524 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.027 3.973 21 C 0.072 3.928 22 O -0.389 6.389 23 C -0.105 4.105 24 C -0.127 4.127 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.017 0.983 33 H 0.074 0.926 34 H -0.041 1.041 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -20.442 0.666 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.139 4.139 5 C -0.130 4.130 6 C -0.100 4.100 7 C 0.088 3.912 8 H 0.094 0.906 9 C -0.093 4.093 10 N -0.264 5.264 11 C 0.082 3.918 12 C -0.562 4.562 13 H 0.085 0.915 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.102 4.102 21 C -0.005 4.005 22 O -0.308 6.308 23 C -0.123 4.123 24 C -0.145 4.145 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.035 0.965 33 H 0.093 0.907 34 H -0.023 1.023 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.199 -20.403 0.951 21.345 hybrid contribution -0.859 1.467 -0.676 1.829 sum 5.341 -18.936 0.275 19.676 Atomic orbital electron populations 1.21750 0.94463 1.02453 1.01738 1.20588 0.96264 0.91042 1.03942 1.20264 0.97942 0.97469 0.92793 1.21249 0.99747 0.94179 0.98746 1.21157 0.99313 0.95361 0.97176 1.19607 1.01737 0.93968 0.94737 1.20801 0.89172 0.90996 0.90223 0.90609 1.22683 0.97082 0.89287 1.00250 1.62310 1.19313 1.02902 1.41923 1.19400 0.88268 0.91126 0.93005 1.21454 0.94524 0.91023 1.49229 0.91463 1.25977 0.94963 1.04163 0.94672 1.70105 1.03799 1.32654 1.51017 0.85263 0.78954 0.78214 0.77760 1.18401 1.20407 1.20343 1.22696 0.95111 1.01375 0.91006 1.22798 0.94087 0.80112 1.03469 1.87904 1.63311 1.30025 1.49535 1.21039 0.98287 0.95339 0.97632 1.21240 1.00166 0.94267 0.98820 0.90834 0.92996 0.93389 0.90114 0.89668 0.83610 0.84748 0.96457 0.90725 1.02316 0.97760 0.92591 0.89829 0.96508 0.91728 0.85832 0.86745 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.08 -1.71 5.13 -19.86 -0.10 -1.81 16 4 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 5 C -0.11 -2.77 9.68 22.27 0.22 -2.55 16 6 C -0.10 -2.92 5.01 -19.87 -0.10 -3.02 16 7 C 0.15 4.82 3.01 29.88 0.09 4.91 16 8 H 0.08 2.42 8.05 -2.39 -0.02 2.40 16 9 C 0.04 1.41 4.91 86.31 0.42 1.84 16 10 N -0.54 -24.53 4.72 -899.78 -4.25 -28.78 16 11 C 0.21 11.53 4.72 85.56 0.40 11.93 16 12 C -0.52 -30.02 8.48 25.60 0.22 -29.80 16 13 H 0.07 3.73 7.11 -2.91 -0.02 3.71 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 16 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.03 1.06 5.46 86.31 0.47 1.53 16 21 C 0.07 2.24 7.01 72.01 0.50 2.75 16 22 O -0.39 -12.97 9.62 -148.98 -1.43 -14.41 16 23 C -0.10 -2.94 9.35 22.27 0.21 -2.73 16 24 C -0.13 -2.91 9.70 22.27 0.22 -2.69 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.97 8.09 -2.39 -0.02 0.96 16 29 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 30 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 2.95 8.09 -2.39 -0.02 2.93 16 34 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 35 H 0.00 0.26 8.04 -2.38 -0.02 0.24 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.08 3.48 6.80 -2.38 -0.02 3.46 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.11 3.37 7.64 -2.91 -0.02 3.35 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.82 341.59 1.72 -65.10 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.97 Total: 12.20 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.12 Total: -23.71 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.96 Total: -85.48 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.43 Total: -14.41 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.82 1.72 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276870113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.284 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds