Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46523 * 2 1 4 4 C 1.53002 * 109.46869 * 60.00320 * 3 2 1 5 5 C 1.52995 * 109.47216 * 300.00002 * 3 2 1 6 6 C 1.53005 * 109.46802 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 3 2 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 3 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47666 * 299.99360 * 1 2 3 25 25 H 1.08994 * 109.47508 * 60.00117 * 1 2 3 26 26 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47256 * 240.00353 * 2 1 3 28 28 H 1.08994 * 109.47508 * 119.99883 * 2 1 3 29 29 H 1.08996 * 109.47029 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47155 * 299.99829 * 4 3 2 31 31 H 1.08998 * 109.46789 * 59.99601 * 4 3 2 32 32 H 1.09000 * 109.47295 * 300.00095 * 5 3 2 33 33 H 1.08997 * 109.46938 * 60.00091 * 5 3 2 34 34 H 1.09005 * 109.46727 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 3 2 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 3 2 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 3 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1638 1.2493 5 6 1.5298 2.1638 -1.2492 6 6 3.5699 1.4427 0.0006 7 7 4.0581 2.8240 0.0013 8 6 5.3832 3.0704 0.0014 9 8 6.1733 2.1462 0.0014 10 6 5.8752 4.4623 0.0026 11 6 4.9634 5.5248 0.0087 12 6 5.4129 6.8117 0.0045 13 6 6.7976 7.0718 0.0050 14 6 7.2679 8.4022 0.0071 15 1 8.2439 8.6293 0.4098 16 6 6.4679 9.4294 -0.5138 17 7 5.4559 9.1404 -1.2879 18 14 6.8491 11.2108 -0.1008 19 1 8.2166 11.5466 -0.5727 20 1 5.8633 12.0963 -0.7710 21 1 6.7711 11.4058 1.3694 22 6 7.7112 5.9993 0.0041 23 6 7.2522 4.7158 0.0022 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 3.1913 1.2496 30 1 0.4399 2.1637 1.2494 31 1 1.8932 1.6499 2.1392 32 1 1.8932 1.6501 -2.1392 33 1 0.4399 2.1637 -1.2492 34 1 1.8935 3.1914 -1.2493 35 1 3.9336 0.9288 -0.8891 36 1 3.9329 0.9290 0.8909 37 1 3.4277 3.5612 0.0016 38 1 3.9021 5.3245 0.0131 39 1 4.7087 7.6306 0.0051 40 1 4.9023 9.8510 -1.6480 41 1 8.7736 6.1938 0.0049 42 1 7.9518 3.8931 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277026927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -48.949444 kcal Electronic energy + Delta-G solvation = -20891.996480 eV Core-core repulsion = 17835.400105 eV Total energy + Delta-G solvation = -3056.596376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45334 -38.00266 -36.89011 -33.85246 -33.54107 -30.56420 -29.74657 -29.42478 -27.36868 -26.97816 -25.57397 -23.37664 -21.65408 -20.89292 -19.59966 -18.69390 -17.51763 -16.91112 -15.63926 -15.22839 -15.14605 -14.77665 -14.48179 -14.04816 -13.92649 -13.39204 -13.37698 -13.16757 -12.72649 -12.28914 -12.14996 -12.08616 -12.02569 -11.87552 -11.79155 -11.36087 -11.26187 -11.23045 -10.98575 -10.68926 -10.64870 -10.59610 -10.52450 -10.04717 -9.54675 -9.35106 -8.93190 -8.51532 -7.71267 -7.52242 -7.01948 -4.59639 2.25403 2.93186 2.94561 2.98697 3.04109 3.74493 3.86891 3.90373 4.58325 4.62841 4.71093 4.72179 5.14362 5.24018 5.33673 5.49173 5.57305 5.61031 5.69254 5.76295 5.81072 5.88259 5.89928 5.96628 6.00398 6.04361 6.09383 6.17871 6.32892 6.33080 6.36594 6.77537 6.83709 6.98168 7.09376 7.14472 7.44500 7.66617 7.80324 7.86574 8.08169 8.28769 8.40605 8.63972 8.76123 9.12506 9.90216 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.003657 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.516131 B = 7655.550896 C = 8406.130724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.145 4.145 6 C 0.134 3.866 7 N -0.739 5.739 8 C 0.570 3.430 9 O -0.577 6.577 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.774 5.774 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.239 4.239 23 C -0.023 4.023 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -7.738 1.583 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.078 4.078 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.010 3.990 7 N -0.393 5.393 8 C 0.365 3.635 9 O -0.460 6.460 10 C -0.287 4.287 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.126 3.874 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.738 3.262 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.058 -8.289 1.424 13.111 hybrid contribution -0.238 1.183 0.016 1.207 sum -10.296 -7.105 1.440 12.592 Atomic orbital electron populations 1.21875 0.95769 1.01369 1.02149 1.21492 0.95984 0.95164 1.02220 1.20820 0.94456 0.96130 0.96360 1.21936 1.00913 1.00531 0.96793 1.21938 1.00906 1.00572 0.96788 1.21217 0.91894 0.84333 1.01588 1.45952 1.07655 1.07631 1.78037 1.18586 0.81014 0.89703 0.74245 1.90628 1.55605 1.46801 1.52935 1.18926 0.94263 0.90262 1.25264 1.20462 0.96096 0.93320 0.98374 1.20968 0.96132 0.94966 1.07547 1.17777 0.91696 0.92653 0.85286 1.19809 1.02670 0.91460 1.33297 0.89782 1.26086 0.93725 1.02367 0.92479 1.69733 1.13443 1.36260 1.20283 0.86261 0.79536 0.80295 0.80156 1.18686 1.20071 1.18500 1.20729 0.98119 0.92280 1.14675 1.20364 0.93568 0.96006 0.94244 0.92394 0.92383 0.93015 0.91785 0.91796 0.92400 0.92221 0.92496 0.92476 0.92219 0.92363 0.92198 0.92210 0.76731 0.89487 0.86224 0.90224 0.88391 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.21 37.16 0.34 -0.87 16 2 C -0.11 -1.02 4.99 -26.73 -0.13 -1.15 16 3 C -0.08 -0.83 0.56 -154.50 -0.09 -0.92 16 4 C -0.14 -1.49 7.95 37.16 0.30 -1.20 16 5 C -0.14 -1.53 7.95 37.16 0.30 -1.23 16 6 C 0.13 1.92 4.56 -4.04 -0.02 1.90 16 7 N -0.74 -12.55 4.91 -61.31 -0.30 -12.85 16 8 C 0.57 12.37 7.76 -12.43 -0.10 12.27 16 9 O -0.58 -14.07 16.32 5.29 0.09 -13.99 16 10 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 12 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 13 C 0.13 3.30 5.57 -106.80 -0.59 2.71 16 14 C -0.44 -11.10 9.05 -37.75 -0.34 -11.44 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 17 N -0.77 -18.56 10.95 55.56 0.61 -17.95 16 18 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 19 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 30 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 34 H 0.06 0.67 6.86 -51.93 -0.36 0.31 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 6.11 4.16 -40.82 -0.17 5.94 16 38 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 39 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 40 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 41 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 42 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 334.11 15.07 5.04 5.04 Total: -1.00 -28.02 334.11 -8.33 -36.35 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.21 Total: 10.17 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.52 Total: -19.04 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.31 Total: -30.80 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.02 -8.33 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277026927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.604 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds