Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46523 * 2 1 4 4 C 1.53002 * 109.46869 * 60.00320 * 3 2 1 5 5 C 1.52995 * 109.47216 * 300.00002 * 3 2 1 6 6 C 1.53005 * 109.46802 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 3 2 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 3 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47666 * 299.99360 * 1 2 3 25 25 H 1.08994 * 109.47508 * 60.00117 * 1 2 3 26 26 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47256 * 240.00353 * 2 1 3 28 28 H 1.08994 * 109.47508 * 119.99883 * 2 1 3 29 29 H 1.08996 * 109.47029 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47155 * 299.99829 * 4 3 2 31 31 H 1.08998 * 109.46789 * 59.99601 * 4 3 2 32 32 H 1.09000 * 109.47295 * 300.00095 * 5 3 2 33 33 H 1.08997 * 109.46938 * 60.00091 * 5 3 2 34 34 H 1.09005 * 109.46727 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 3 2 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 3 2 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 3 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1638 1.2493 5 6 1.5298 2.1638 -1.2492 6 6 3.5699 1.4427 0.0006 7 7 4.0581 2.8240 0.0013 8 6 5.3832 3.0704 0.0014 9 8 6.1733 2.1462 0.0014 10 6 5.8752 4.4623 0.0026 11 6 4.9634 5.5248 0.0087 12 6 5.4129 6.8117 0.0045 13 6 6.7976 7.0718 0.0050 14 6 7.2679 8.4022 0.0071 15 1 8.2439 8.6293 0.4098 16 6 6.4679 9.4294 -0.5138 17 7 5.4559 9.1404 -1.2879 18 14 6.8491 11.2108 -0.1008 19 1 8.2166 11.5466 -0.5727 20 1 5.8633 12.0963 -0.7710 21 1 6.7711 11.4058 1.3694 22 6 7.7112 5.9993 0.0041 23 6 7.2522 4.7158 0.0022 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 3.1913 1.2496 30 1 0.4399 2.1637 1.2494 31 1 1.8932 1.6499 2.1392 32 1 1.8932 1.6501 -2.1392 33 1 0.4399 2.1637 -1.2492 34 1 1.8935 3.1914 -1.2493 35 1 3.9336 0.9288 -0.8891 36 1 3.9329 0.9290 0.8909 37 1 3.4277 3.5612 0.0016 38 1 3.9021 5.3245 0.0131 39 1 4.7087 7.6306 0.0051 40 1 4.9023 9.8510 -1.6480 41 1 8.7736 6.1938 0.0049 42 1 7.9518 3.8931 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277026927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -63.018478 kcal Electronic energy + Delta-G solvation = -20892.606559 eV Core-core repulsion = 17835.400105 eV Total energy + Delta-G solvation = -3057.206455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96648 -39.36332 -38.52842 -35.66486 -34.94651 -32.15513 -31.31438 -30.80037 -28.36318 -28.20059 -27.07545 -24.49216 -23.24691 -22.72810 -21.24685 -19.68850 -19.35997 -18.42912 -17.31258 -16.78671 -16.30829 -15.90020 -15.72298 -15.50832 -15.36230 -14.96590 -14.56580 -14.53878 -14.32539 -13.87248 -13.67722 -13.26678 -13.05427 -12.99643 -12.85249 -12.80952 -12.69615 -12.61615 -12.35928 -12.02072 -11.78782 -11.59442 -11.39953 -11.39536 -11.34516 -11.12244 -10.69717 -10.04093 -9.58180 -9.39712 -8.78524 -6.48630 0.43991 1.14122 1.39430 1.44807 1.52522 2.12713 2.18500 2.43022 2.79163 3.68169 3.68433 3.84420 3.88207 4.25951 4.29642 4.39470 4.40243 4.43956 4.62726 4.71228 4.75618 4.78508 4.85339 4.91604 5.02958 5.04223 5.07337 5.14788 5.15458 5.18237 5.23604 5.28727 5.30783 5.51441 5.57035 5.59689 5.61688 5.81721 5.94132 5.98865 6.22413 6.53476 6.71329 6.77021 6.88549 7.44720 8.16644 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.003657 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.516131 B = 7655.550896 C = 8406.130724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.068 4.068 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.131 3.869 7 N -0.720 5.720 8 C 0.568 3.432 9 O -0.609 6.609 10 C -0.294 4.294 11 C -0.054 4.054 12 C -0.196 4.196 13 C 0.102 3.898 14 C -0.475 4.475 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.799 5.799 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.258 1.258 22 C -0.253 4.253 23 C -0.033 4.033 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.406 0.594 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -7.333 1.713 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.069 4.069 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.007 3.993 7 N -0.373 5.373 8 C 0.362 3.638 9 O -0.494 6.494 10 C -0.298 4.298 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.099 3.901 14 C -0.502 4.502 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.422 5.422 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.182 1.182 22 C -0.272 4.272 23 C -0.053 4.053 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.032 -7.901 1.549 14.478 hybrid contribution 0.330 0.969 -0.051 1.025 sum -11.703 -6.932 1.498 13.684 Atomic orbital electron populations 1.21856 0.94301 1.02178 1.02517 1.21487 0.97174 0.93732 1.02318 1.20776 0.91520 0.97615 0.96951 1.21952 1.02207 0.99724 0.96310 1.21954 1.02214 0.99700 0.96370 1.21426 0.94598 0.82354 1.00888 1.45816 1.06152 1.09356 1.75930 1.18439 0.82350 0.88692 0.74343 1.90607 1.56808 1.47336 1.54623 1.19202 0.94234 0.91516 1.24851 1.20696 0.97723 0.92244 0.96610 1.21007 0.95773 0.95699 1.09004 1.18128 0.92519 0.93409 0.86027 1.20094 1.03511 0.92136 1.34475 0.89659 1.26919 0.93186 1.06365 0.91625 1.69754 1.13987 1.38144 1.20344 0.85152 0.79549 0.74638 0.79885 1.18356 1.18744 1.18219 1.20871 0.98534 0.92463 1.15364 1.20506 0.94387 0.95881 0.94494 0.91942 0.92030 0.92097 0.91820 0.91712 0.93350 0.90234 0.92638 0.92779 0.90211 0.93428 0.92995 0.92824 0.75629 0.86143 0.86751 0.89169 0.87762 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.21 71.98 0.66 -1.26 16 2 C -0.11 -1.77 4.99 30.60 0.15 -1.61 16 3 C -0.07 -1.34 0.56 -52.18 -0.03 -1.37 16 4 C -0.14 -2.66 7.95 71.98 0.57 -2.09 16 5 C -0.15 -2.74 7.95 71.98 0.57 -2.17 16 6 C 0.13 3.64 4.56 86.38 0.39 4.03 16 7 N -0.72 -23.82 4.91 -466.14 -2.29 -26.11 16 8 C 0.57 24.62 7.76 86.72 0.67 25.29 16 9 O -0.61 -29.95 16.32 -4.00 -0.07 -30.01 16 10 C -0.29 -13.67 5.89 -19.94 -0.12 -13.79 16 11 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 12 C -0.20 -9.70 8.63 22.47 0.19 -9.51 16 13 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 14 C -0.47 -24.06 9.05 23.46 0.21 -23.84 16 15 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.76 5.15 85.35 0.44 2.20 16 17 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 18 Si 0.99 34.70 29.59 68.60 2.03 36.73 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 22 C -0.25 -12.71 9.73 22.47 0.22 -12.50 16 23 C -0.03 -1.64 9.52 22.25 0.21 -1.43 16 24 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 25 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.98 6.86 -2.39 -0.02 0.96 16 30 H 0.08 1.16 6.43 -2.39 -0.02 1.15 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.20 6.43 -2.39 -0.02 1.18 16 34 H 0.05 1.00 6.86 -2.38 -0.02 0.98 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.41 11.90 4.16 -92.71 -0.39 11.51 16 38 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 39 H 0.11 5.72 6.18 -2.91 -0.02 5.71 16 40 H 0.30 12.60 8.29 -92.70 -0.77 11.83 16 41 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.10 4.86 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -60.55 334.11 4.80 -55.75 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.63 Total: 36.48 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 4.25 Total: -34.98 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -2.05 Total: -63.97 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.07 Total: -30.01 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -60.55 4.80 -55.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277026927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.268 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds