Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47274 * 2 1 4 4 C 1.38329 * 119.91500 * 269.72291 * 3 2 1 5 5 C 1.38070 * 120.08350 * 179.76174 * 4 3 2 6 6 C 1.39023 * 119.91269 * 0.53734 * 5 4 3 7 7 N 1.39531 * 120.08291 * 179.70124 * 6 5 4 8 8 C 1.46497 * 120.00152 * 67.30711 * 7 6 5 9 9 C 1.52998 * 109.47060 * 90.00704 * 8 7 6 10 10 C 1.52995 * 109.47523 * 64.99912 * 9 8 7 11 11 C 1.53003 * 109.47070 * 185.00191 * 9 8 7 12 12 C 1.34774 * 119.99894 * 247.31160 * 7 6 5 13 13 O 1.21746 * 120.00361 * 4.51543 * 12 7 6 14 14 C 1.46179 * 120.00229 * 184.51358 * 12 7 6 15 15 H 1.07998 * 119.99443 * 351.04394 * 14 12 7 16 16 C 1.40119 * 120.00127 * 171.03897 * 14 12 7 17 17 N 1.30638 * 119.99870 * 353.18634 * 16 14 12 18 18 Si 1.86797 * 119.99932 * 173.17948 * 16 14 12 19 19 H 1.48499 * 109.46749 * 94.98395 * 18 16 14 20 20 H 1.48493 * 109.47338 * 214.98278 * 18 16 14 21 21 H 1.48500 * 109.47478 * 334.98683 * 18 16 14 22 22 C 1.39023 * 119.83703 * 359.71639 * 6 5 4 23 23 C 1.38064 * 119.91821 * 0.02562 * 22 6 5 24 24 H 1.08997 * 109.46913 * 60.00030 * 1 2 3 25 25 H 1.09003 * 109.47045 * 299.99995 * 1 2 3 26 26 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46963 * 119.99526 * 2 1 3 28 28 H 1.08992 * 109.47087 * 239.99525 * 2 1 3 29 29 H 1.08001 * 119.95761 * 0.02562 * 4 3 2 30 30 H 1.08004 * 120.04119 * 180.25204 * 5 4 3 31 31 H 1.09007 * 109.47357 * 210.00371 * 8 7 6 32 32 H 1.08998 * 109.47435 * 330.00298 * 8 7 6 33 33 H 1.09006 * 109.47030 * 304.99369 * 9 8 7 34 34 H 1.08997 * 109.47012 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46682 * 300.00054 * 10 9 8 36 36 H 1.08998 * 109.47282 * 60.00302 * 10 9 8 37 37 H 1.09005 * 109.47464 * 59.99726 * 11 9 8 38 38 H 1.08997 * 109.47191 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47087 * 299.99301 * 11 9 8 40 40 H 0.97003 * 119.99777 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.04601 * 179.97438 * 22 6 5 42 42 H 1.08002 * 119.96285 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2678 2.0692 -1.1990 5 6 2.7234 3.3726 -1.2031 6 6 2.9561 4.0294 -0.0001 7 7 3.4225 5.3445 -0.0001 8 6 2.5643 6.4261 -0.4897 9 6 1.7409 6.9888 0.6706 10 6 2.6761 7.6437 1.6891 11 6 0.7558 8.0315 0.1384 12 6 4.6626 5.6197 0.4503 13 8 5.4056 4.7133 0.7799 14 6 5.1156 7.0064 0.5430 15 1 4.5177 7.7992 0.1184 16 6 6.3254 7.3069 1.1827 17 7 6.9824 6.3690 1.8115 18 14 6.9990 9.0486 1.1364 19 1 6.5791 9.7744 2.3620 20 1 8.4818 9.0044 1.0708 21 1 6.4713 9.7518 -0.0604 22 6 2.7234 3.3726 1.2029 23 6 2.2627 2.0711 1.1990 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 2.0909 1.5568 -2.1331 30 1 2.9031 3.8796 -2.1396 31 1 3.1828 7.2173 -0.9135 32 1 1.8937 6.0389 -1.2569 33 1 1.1897 6.1801 1.1508 34 1 2.0895 8.0441 2.5159 35 1 3.3778 6.9007 2.0682 36 1 3.2271 8.4523 1.2090 37 1 0.0895 7.5650 -0.5872 38 1 0.1690 8.4321 0.9650 39 1 1.3069 8.8402 -0.3417 40 1 7.8202 6.5770 2.2541 41 1 2.9034 3.8796 2.1394 42 1 2.0820 1.5601 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280346270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -26.991532 kcal Electronic energy + Delta-G solvation = -21827.784470 eV Core-core repulsion = 18772.140261 eV Total energy + Delta-G solvation = -3055.644209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.47662 -37.67856 -35.36967 -34.13776 -32.60666 -31.93611 -30.40493 -28.50330 -26.96758 -25.80748 -25.22909 -23.29205 -22.15291 -20.95317 -19.71593 -19.25333 -16.69683 -16.05886 -15.65938 -15.21465 -15.09861 -14.40825 -13.93493 -13.86723 -13.59933 -13.32438 -13.21628 -12.83119 -12.58569 -12.33949 -12.05500 -11.94646 -11.75049 -11.38276 -11.24153 -11.21176 -11.17482 -11.00854 -10.67056 -10.58227 -10.51858 -10.35975 -10.30512 -10.13124 -9.68048 -8.87140 -8.38213 -8.24129 -7.64965 -7.17284 -6.28302 -4.63422 1.89065 1.97321 3.09859 3.18562 3.21250 4.03144 4.26914 4.42548 4.52053 5.03378 5.09697 5.39886 5.43986 5.46393 5.47174 5.52567 5.67067 5.71109 5.76476 5.89610 5.91518 5.94400 5.99787 6.16159 6.18243 6.22691 6.26105 6.33174 6.37458 6.52253 6.56587 6.61597 6.71928 6.85071 6.95020 7.07833 7.22142 7.36732 7.41661 7.42411 7.65698 8.17312 8.42573 8.96833 9.29921 10.51414 10.68858 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.005488 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.617154 B = 5100.526637 C = 5911.484655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.110 4.110 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.187 3.813 7 N -0.604 5.604 8 C 0.135 3.865 9 C -0.111 4.111 10 C -0.139 4.139 11 C -0.142 4.142 12 C 0.560 3.440 13 O -0.568 6.568 14 C -0.534 4.534 15 H 0.079 0.921 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 -3.272 -3.350 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.111 4.111 4 C -0.130 4.130 5 C -0.157 4.157 6 C 0.095 3.905 7 N -0.336 5.336 8 C 0.012 3.988 9 C -0.130 4.130 10 C -0.196 4.196 11 C -0.200 4.200 12 C 0.367 3.633 13 O -0.449 6.449 14 C -0.571 4.571 15 H 0.097 0.903 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.131 4.131 23 C -0.128 4.128 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.464 -3.782 -3.055 12.452 hybrid contribution 0.362 0.964 0.018 1.030 sum -11.102 -2.818 -3.036 11.850 Atomic orbital electron populations 1.21746 0.95312 1.01023 1.02115 1.20440 0.95665 0.93253 1.02244 1.19691 1.02141 0.95969 0.93255 1.20718 1.00796 0.94474 0.96973 1.21288 1.02070 0.94712 0.97639 1.17707 0.93980 0.86763 0.92067 1.45936 1.16270 1.02564 1.68853 1.21360 0.92638 0.90372 0.94465 1.21522 0.96388 0.97460 0.97675 1.22058 0.98602 1.01841 0.97059 1.21782 0.98736 0.99046 1.00422 1.18307 0.77828 0.90674 0.76493 1.90652 1.53317 1.48290 1.52646 1.21003 1.06119 0.91224 1.38721 0.90282 1.25681 0.96019 0.97970 0.93395 1.69960 1.12879 1.33034 1.23740 0.86460 0.78606 0.83112 0.79325 1.19750 1.20409 1.18718 1.21347 0.98545 0.95071 0.98125 1.20795 1.00383 0.94549 0.97035 0.92718 0.92668 0.92959 0.91511 0.91569 0.86861 0.86621 0.89984 0.93026 0.92215 0.95388 0.90238 0.92141 0.93427 0.93170 0.92715 0.91989 0.86437 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.08 -0.94 6.06 -27.89 -0.17 -1.11 16 3 C -0.11 -1.72 5.14 -104.56 -0.54 -2.25 16 4 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 5 C -0.14 -2.55 9.66 -39.35 -0.38 -2.93 16 6 C 0.19 3.98 4.76 -83.77 -0.40 3.58 16 7 N -0.60 -13.63 2.40 -115.10 -0.28 -13.91 16 8 C 0.14 2.50 4.88 -4.04 -0.02 2.48 16 9 C -0.11 -1.86 3.13 -90.62 -0.28 -2.15 16 10 C -0.14 -2.62 7.55 37.16 0.28 -2.34 16 11 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 12 C 0.56 15.39 6.35 -13.07 -0.08 15.30 16 13 O -0.57 -18.16 14.87 5.15 0.08 -18.08 16 14 C -0.53 -14.08 6.12 -35.69 -0.22 -14.30 16 15 H 0.08 1.90 4.34 -52.49 -0.23 1.67 16 16 C 0.09 2.38 5.48 -17.35 -0.10 2.29 16 17 N -0.77 -22.32 11.93 55.55 0.66 -21.66 16 18 Si 0.90 19.51 29.57 -169.99 -5.03 14.49 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 22 C -0.11 -2.27 9.51 -39.35 -0.37 -2.64 16 23 C -0.11 -1.87 9.69 -39.61 -0.38 -2.26 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.08 1.56 6.19 -51.93 -0.32 1.24 16 32 H 0.05 0.85 7.84 -51.93 -0.41 0.44 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.82 5.72 -51.93 -0.30 1.52 16 36 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 41 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -32.02 339.57 -8.42 -40.44 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.64 Total: 4.78 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.34 Total: -11.18 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.39 Total: -35.57 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.08 Total: -18.08 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -8.42 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280346270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.447 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds