Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47274 * 2 1 4 4 C 1.38329 * 119.91500 * 269.72291 * 3 2 1 5 5 C 1.38070 * 120.08350 * 179.76174 * 4 3 2 6 6 C 1.39023 * 119.91269 * 0.53734 * 5 4 3 7 7 N 1.39531 * 120.08291 * 179.70124 * 6 5 4 8 8 C 1.46497 * 120.00152 * 67.30711 * 7 6 5 9 9 C 1.52998 * 109.47060 * 90.00704 * 8 7 6 10 10 C 1.52995 * 109.47523 * 64.99912 * 9 8 7 11 11 C 1.53003 * 109.47070 * 185.00191 * 9 8 7 12 12 C 1.34774 * 119.99894 * 247.31160 * 7 6 5 13 13 O 1.21746 * 120.00361 * 4.51543 * 12 7 6 14 14 C 1.46179 * 120.00229 * 184.51358 * 12 7 6 15 15 H 1.07998 * 119.99443 * 351.04394 * 14 12 7 16 16 C 1.40119 * 120.00127 * 171.03897 * 14 12 7 17 17 N 1.30638 * 119.99870 * 353.18634 * 16 14 12 18 18 Si 1.86797 * 119.99932 * 173.17948 * 16 14 12 19 19 H 1.48499 * 109.46749 * 94.98395 * 18 16 14 20 20 H 1.48493 * 109.47338 * 214.98278 * 18 16 14 21 21 H 1.48500 * 109.47478 * 334.98683 * 18 16 14 22 22 C 1.39023 * 119.83703 * 359.71639 * 6 5 4 23 23 C 1.38064 * 119.91821 * 0.02562 * 22 6 5 24 24 H 1.08997 * 109.46913 * 60.00030 * 1 2 3 25 25 H 1.09003 * 109.47045 * 299.99995 * 1 2 3 26 26 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46963 * 119.99526 * 2 1 3 28 28 H 1.08992 * 109.47087 * 239.99525 * 2 1 3 29 29 H 1.08001 * 119.95761 * 0.02562 * 4 3 2 30 30 H 1.08004 * 120.04119 * 180.25204 * 5 4 3 31 31 H 1.09007 * 109.47357 * 210.00371 * 8 7 6 32 32 H 1.08998 * 109.47435 * 330.00298 * 8 7 6 33 33 H 1.09006 * 109.47030 * 304.99369 * 9 8 7 34 34 H 1.08997 * 109.47012 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46682 * 300.00054 * 10 9 8 36 36 H 1.08998 * 109.47282 * 60.00302 * 10 9 8 37 37 H 1.09005 * 109.47464 * 59.99726 * 11 9 8 38 38 H 1.08997 * 109.47191 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47087 * 299.99301 * 11 9 8 40 40 H 0.97003 * 119.99777 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.04601 * 179.97438 * 22 6 5 42 42 H 1.08002 * 119.96285 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2678 2.0692 -1.1990 5 6 2.7234 3.3726 -1.2031 6 6 2.9561 4.0294 -0.0001 7 7 3.4225 5.3445 -0.0001 8 6 2.5643 6.4261 -0.4897 9 6 1.7409 6.9888 0.6706 10 6 2.6761 7.6437 1.6891 11 6 0.7558 8.0315 0.1384 12 6 4.6626 5.6197 0.4503 13 8 5.4056 4.7133 0.7799 14 6 5.1156 7.0064 0.5430 15 1 4.5177 7.7992 0.1184 16 6 6.3254 7.3069 1.1827 17 7 6.9824 6.3690 1.8115 18 14 6.9990 9.0486 1.1364 19 1 6.5791 9.7744 2.3620 20 1 8.4818 9.0044 1.0708 21 1 6.4713 9.7518 -0.0604 22 6 2.7234 3.3726 1.2029 23 6 2.2627 2.0711 1.1990 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 2.0909 1.5568 -2.1331 30 1 2.9031 3.8796 -2.1396 31 1 3.1828 7.2173 -0.9135 32 1 1.8937 6.0389 -1.2569 33 1 1.1897 6.1801 1.1508 34 1 2.0895 8.0441 2.5159 35 1 3.3778 6.9007 2.0682 36 1 3.2271 8.4523 1.2090 37 1 0.0895 7.5650 -0.5872 38 1 0.1690 8.4321 0.9650 39 1 1.3069 8.8402 -0.3417 40 1 7.8202 6.5770 2.2541 41 1 2.9034 3.8796 2.1394 42 1 2.0820 1.5601 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280346270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -44.607892 kcal Electronic energy + Delta-G solvation = -21828.548373 eV Core-core repulsion = 18772.140261 eV Total energy + Delta-G solvation = -3056.408112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06722 -39.25709 -37.15268 -35.53911 -34.50842 -33.44106 -31.82856 -29.94842 -28.61138 -27.39381 -26.71602 -24.60670 -23.57493 -22.41035 -21.20585 -20.84619 -18.53213 -17.76523 -17.53929 -16.62732 -16.41686 -16.10802 -15.44103 -15.25499 -15.01914 -14.55952 -14.51906 -14.21634 -14.13983 -13.80577 -13.55777 -13.42593 -13.20282 -12.98341 -12.80529 -12.68585 -12.55276 -12.29983 -12.22170 -12.05801 -11.90103 -11.79139 -11.63934 -11.60865 -11.30414 -10.88113 -9.88124 -9.79571 -9.72471 -8.85300 -8.30638 -6.73030 0.46133 0.53512 1.38204 1.39909 1.54589 2.22295 2.45570 2.77086 2.87339 3.62538 3.94904 3.95464 4.03346 4.13284 4.18856 4.34316 4.38788 4.52289 4.58085 4.64056 4.72283 4.74770 4.76017 4.92186 4.98727 5.00847 5.08380 5.13104 5.14735 5.20915 5.23658 5.32634 5.36961 5.42450 5.47867 5.51414 5.70087 5.74283 5.76581 5.86709 6.02881 6.21710 6.66681 6.90253 7.37324 8.48605 8.68042 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.005488 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.617154 B = 5100.526637 C = 5911.484655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.100 4.100 4 C -0.104 4.104 5 C -0.145 4.145 6 C 0.149 3.851 7 N -0.602 5.602 8 C 0.131 3.869 9 C -0.104 4.104 10 C -0.131 4.131 11 C -0.133 4.133 12 C 0.548 3.452 13 O -0.628 6.628 14 C -0.543 4.543 15 H 0.099 0.901 16 C 0.033 3.967 17 N -0.824 5.824 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.245 1.245 22 C -0.137 4.137 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.272 0.728 41 H 0.085 0.915 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -3.039 -5.020 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.100 4.100 4 C -0.123 4.123 5 C -0.165 4.165 6 C 0.057 3.943 7 N -0.333 5.333 8 C 0.009 3.991 9 C -0.123 4.123 10 C -0.188 4.188 11 C -0.190 4.190 12 C 0.356 3.644 13 O -0.514 6.514 14 C -0.580 4.580 15 H 0.117 0.883 16 C -0.182 4.182 17 N -0.454 5.454 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.168 1.168 22 C -0.157 4.157 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.722 -3.539 -4.751 14.947 hybrid contribution 0.942 0.750 0.538 1.318 sum -12.781 -2.790 -4.213 13.743 Atomic orbital electron populations 1.21720 0.93734 1.02473 1.01921 1.20537 0.96870 0.90485 1.03561 1.20170 0.99945 0.97677 0.92229 1.21141 0.98987 0.93374 0.98774 1.21436 1.02343 0.95920 0.96760 1.18001 0.96224 0.86682 0.93414 1.45652 1.15405 1.04337 1.67919 1.21588 0.92527 0.89344 0.95679 1.21442 0.96360 0.98075 0.96469 1.21906 0.98286 1.00380 0.98247 1.21704 0.98059 0.98006 1.01278 1.18680 0.78955 0.90736 0.76051 1.90585 1.55703 1.49809 1.55340 1.21398 1.06693 0.91403 1.38466 0.88292 1.26850 0.96094 1.02904 0.92303 1.70146 1.13665 1.36233 1.25402 0.85235 0.77559 0.76805 0.80281 1.18565 1.20335 1.16763 1.21278 1.00834 0.96754 0.96836 1.21049 0.99669 0.93282 0.99026 0.92552 0.93290 0.90729 0.90748 0.89807 0.83159 0.85795 0.90559 0.90497 0.93205 0.93513 0.95133 0.92348 0.91591 0.91843 0.91956 0.91801 0.89632 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.08 -1.59 6.06 29.85 0.18 -1.41 16 3 C -0.10 -2.92 5.14 -19.82 -0.10 -3.02 16 4 C -0.10 -3.13 9.69 22.25 0.22 -2.92 16 5 C -0.14 -5.34 9.66 22.42 0.22 -5.12 16 6 C 0.15 6.56 4.76 38.29 0.18 6.74 16 7 N -0.60 -28.41 2.40 -636.26 -1.53 -29.93 16 8 C 0.13 4.85 4.88 86.38 0.42 5.27 16 9 C -0.10 -3.46 3.13 -10.79 -0.03 -3.50 16 10 C -0.13 -5.03 7.55 71.98 0.54 -4.49 16 11 C -0.13 -3.22 9.19 71.98 0.66 -2.56 16 12 C 0.55 31.86 6.35 86.31 0.55 32.41 16 13 O -0.63 -42.96 14.87 -4.50 -0.07 -43.03 16 14 C -0.54 -29.67 6.12 24.79 0.15 -29.52 16 15 H 0.10 4.82 4.34 -2.91 -0.01 4.80 16 16 C 0.03 1.83 5.48 85.33 0.47 2.30 16 17 N -0.82 -50.50 11.93 21.85 0.26 -50.24 16 18 Si 0.98 40.56 29.57 68.60 2.03 42.59 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.24 -9.29 7.11 99.48 0.71 -8.58 16 22 C -0.14 -5.94 9.51 22.42 0.21 -5.72 16 23 C -0.11 -3.86 9.69 22.25 0.22 -3.64 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.08 2.88 6.19 -2.38 -0.01 2.87 16 32 H 0.08 2.44 7.84 -2.39 -0.02 2.42 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.46 5.72 -2.39 -0.01 1.45 16 36 H 0.06 2.22 6.46 -2.39 -0.02 2.20 16 37 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 41 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -75.65 339.57 6.28 -69.37 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.99 Total: 28.11 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.60 Total: -16.88 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -1.27 Total: -80.18 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.07 Total: -43.03 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.65 6.28 -69.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280346270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.767 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds