Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46873 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46809 * 55.00233 * 5 4 3 7 7 C 1.52992 * 109.47114 * 294.99733 * 5 4 3 8 8 C 1.50703 * 109.47016 * 174.99808 * 5 4 3 9 9 O 1.21280 * 119.99645 * 105.42527 * 8 5 4 10 10 N 1.34777 * 119.99990 * 285.15305 * 8 5 4 11 11 C 1.37144 * 119.99928 * 178.92451 * 10 8 5 12 12 H 1.08001 * 120.00172 * 245.01750 * 11 10 8 13 13 C 1.38894 * 119.99450 * 65.02007 * 11 10 8 14 14 N 1.31419 * 120.00010 * 53.26657 * 13 11 10 15 15 Si 1.86796 * 119.99837 * 233.25667 * 13 11 10 16 16 H 1.48504 * 109.46658 * 90.00408 * 15 13 11 17 17 H 1.48499 * 109.47316 * 210.00243 * 15 13 11 18 18 H 1.48501 * 109.47536 * 330.00753 * 15 13 11 19 19 C 1.39787 * 120.00246 * 358.92857 * 10 8 5 20 20 C 1.38956 * 120.07611 * 266.13533 * 19 10 8 21 21 C 1.38082 * 119.91958 * 179.76992 * 20 19 10 22 22 C 1.38306 * 120.08133 * 0.49797 * 21 20 19 23 23 C 1.38310 * 120.15162 * 359.75399 * 22 21 20 24 24 C 1.38075 * 120.08108 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46731 * 299.99823 * 1 2 3 27 27 H 1.09001 * 109.47345 * 60.00013 * 1 2 3 28 28 H 1.09007 * 109.46781 * 240.00412 * 2 1 3 29 29 H 1.08996 * 109.47674 * 120.00265 * 2 1 3 30 30 H 1.08998 * 109.47290 * 60.00519 * 3 2 1 31 31 H 1.09001 * 109.47116 * 300.00127 * 3 2 1 32 32 H 1.08998 * 109.47038 * 59.99999 * 4 3 2 33 33 H 1.09001 * 109.47055 * 299.99799 * 4 3 2 34 34 H 1.09003 * 109.47342 * 69.40921 * 7 5 4 35 35 H 1.09000 * 109.46953 * 189.40467 * 7 5 4 36 36 H 1.08996 * 109.47608 * 309.40662 * 7 5 4 37 37 H 0.96995 * 119.99874 * 184.96905 * 14 13 11 38 38 H 1.08003 * 120.04222 * 0.02562 * 20 19 10 39 39 H 1.08002 * 119.95904 * 180.25252 * 21 20 19 40 40 H 1.08001 * 119.92609 * 179.72045 * 22 21 20 41 41 H 1.07997 * 119.95938 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.04491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4235 0.8423 7 6 3.6747 3.5698 -1.3067 8 6 5.5819 2.8869 0.1233 9 8 6.2693 3.1380 -0.8438 10 7 6.1610 2.6147 1.3094 11 6 7.5281 2.5946 1.4165 12 1 8.0379 1.6720 1.6514 13 6 8.2570 3.7610 1.2228 14 7 7.9577 4.8438 1.9047 15 14 9.6629 3.7904 -0.0068 16 1 9.1453 4.1871 -1.3410 17 1 10.6884 4.7685 0.4371 18 1 10.2726 2.4392 -0.0942 19 6 5.3683 2.3529 2.4306 20 6 5.0361 3.3812 3.3041 21 6 4.2489 3.1199 4.4080 22 6 3.7997 1.8345 4.6505 23 6 4.1327 0.8075 3.7860 24 6 4.9149 1.0626 2.6771 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 2.5949 3.7186 -1.3194 35 1 4.1753 4.5352 -1.3815 36 1 3.9650 2.9437 -2.1503 37 1 8.4181 5.6770 1.7185 38 1 5.3897 4.3845 3.1176 39 1 3.9869 3.9195 5.0852 40 1 3.1878 1.6320 5.5171 41 1 3.7806 -0.1951 3.9785 42 1 5.1750 0.2602 2.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282130797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -18.851188 kcal Electronic energy + Delta-G solvation = -22221.886370 eV Core-core repulsion = 19166.595153 eV Total energy + Delta-G solvation = -3055.291217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.64239 -37.69400 -36.02595 -34.36784 -32.93947 -32.02938 -30.31938 -28.69004 -28.24948 -25.68505 -24.11310 -22.34154 -21.90195 -21.31897 -20.51330 -18.74137 -17.43447 -16.50015 -15.75658 -15.24100 -15.06866 -14.44788 -14.23281 -14.03486 -13.92532 -13.45377 -13.19748 -12.76617 -12.72360 -12.51930 -12.24833 -11.98417 -11.85642 -11.61548 -11.34208 -11.27189 -11.09839 -10.92815 -10.73373 -10.58009 -10.50548 -10.42349 -10.24165 -10.19950 -10.05447 -8.59071 -8.43307 -8.24072 -7.82528 -7.42529 -6.48898 -4.08077 1.99733 2.05837 3.33694 3.45237 3.57222 3.92015 4.25360 4.42306 4.72506 4.92929 5.01640 5.06678 5.20673 5.41698 5.47093 5.50427 5.54124 5.61196 5.70905 5.75309 5.88123 5.91223 5.95954 6.09866 6.11887 6.13082 6.18407 6.24833 6.29676 6.35456 6.48286 6.51930 6.61503 6.70500 6.74092 6.80036 6.99896 7.12742 7.41966 7.49304 7.59506 8.35267 8.94443 8.97758 9.42336 10.07852 10.43601 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.007119 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.390355 B = 3932.442154 C = 5015.983774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.120 4.120 5 C -0.110 4.110 6 H 0.080 0.920 7 C -0.126 4.126 8 C 0.498 3.502 9 O -0.549 6.549 10 N -0.419 5.419 11 C -0.392 4.392 12 H 0.078 0.922 13 C 0.118 3.882 14 N -0.795 5.795 15 Si 0.878 3.122 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.268 1.268 19 C 0.165 3.835 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.134 4.134 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.759 -5.379 1.569 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.158 4.158 5 C -0.132 4.132 6 H 0.098 0.902 7 C -0.184 4.184 8 C 0.286 3.714 9 O -0.428 6.428 10 N -0.139 5.139 11 C -0.514 4.514 12 H 0.096 0.904 13 C -0.099 4.099 14 N -0.423 5.423 15 Si 0.702 3.298 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.193 1.193 19 C 0.075 3.925 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.153 4.153 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.313 -5.052 1.179 13.361 hybrid contribution 0.735 0.257 -0.339 0.849 sum -11.578 -4.795 0.839 12.560 Atomic orbital electron populations 1.21771 0.96322 1.01123 1.01613 1.21525 0.95340 0.97399 1.01918 1.21619 0.95565 0.96270 1.01840 1.21851 0.95066 0.95466 1.03367 1.21259 0.94689 0.97633 0.99571 0.90184 1.21574 0.99388 1.00876 0.96513 1.20622 0.88645 0.78768 0.83316 1.90507 1.65033 1.50013 1.37278 1.40952 1.04691 1.64894 1.03361 1.18464 0.78493 0.94683 1.59737 0.90429 1.25309 0.96970 0.95078 0.92584 1.70522 1.40901 1.02549 1.28283 0.86832 0.80451 0.78184 0.84309 1.19177 1.22249 1.19268 1.18461 0.90393 0.91942 0.91697 1.21619 0.96767 1.00396 0.94320 1.20982 0.98876 0.96499 0.97515 1.20916 1.02260 0.93346 0.99778 1.20836 0.99514 0.98426 0.95122 1.21289 0.99610 0.96506 0.97894 0.93163 0.92851 0.92989 0.92272 0.92019 0.92117 0.92114 0.92031 0.89996 0.93130 0.92597 0.92378 0.92157 0.85324 0.86950 0.87186 0.86981 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.55 16 3 C -0.12 -1.49 4.98 -26.73 -0.13 -1.63 16 4 C -0.12 -1.93 4.56 -26.73 -0.12 -2.05 16 5 C -0.11 -2.08 2.01 -91.77 -0.18 -2.27 16 6 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 7 C -0.13 -2.18 8.08 37.15 0.30 -1.88 16 8 C 0.50 12.19 6.70 -10.98 -0.07 12.12 16 9 O -0.55 -15.38 15.26 5.56 0.08 -15.29 16 10 N -0.42 -10.49 2.57 -58.97 -0.15 -10.64 16 11 C -0.39 -10.95 8.46 -14.93 -0.13 -11.08 16 12 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 13 C 0.12 3.29 4.64 -17.49 -0.08 3.21 16 14 N -0.79 -22.06 13.95 55.49 0.77 -21.29 16 15 Si 0.88 22.18 29.39 -169.99 -5.00 17.18 16 16 H -0.27 -7.10 7.11 56.52 0.40 -6.69 16 17 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 19 C 0.16 3.56 3.55 -83.69 -0.30 3.27 16 20 C -0.11 -2.31 9.82 -39.37 -0.39 -2.69 16 21 C -0.12 -2.03 10.04 -39.61 -0.40 -2.43 16 22 C -0.14 -2.20 10.04 -39.53 -0.40 -2.59 16 23 C -0.12 -1.87 10.04 -39.61 -0.40 -2.27 16 24 C -0.13 -2.46 7.35 -39.37 -0.29 -2.75 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.75 6.79 -51.93 -0.35 0.40 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.08 1.36 3.74 -51.93 -0.19 1.16 16 34 H 0.05 0.71 7.05 -51.93 -0.37 0.35 16 35 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 36 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.27 7.00 8.32 -40.82 -0.34 6.67 16 38 H 0.13 2.94 8.06 -52.48 -0.42 2.52 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 2.10 7.25 -52.49 -0.38 1.72 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -30.41 342.58 -8.23 -38.63 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.73 Total: 1.94 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.38 Total: -15.69 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.62 Total: -31.93 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.00 Total: 17.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.41 -8.23 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282130797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.783 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds