Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46873 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46809 * 55.00233 * 5 4 3 7 7 C 1.52992 * 109.47114 * 294.99733 * 5 4 3 8 8 C 1.50703 * 109.47016 * 174.99808 * 5 4 3 9 9 O 1.21280 * 119.99645 * 105.42527 * 8 5 4 10 10 N 1.34777 * 119.99990 * 285.15305 * 8 5 4 11 11 C 1.37144 * 119.99928 * 178.92451 * 10 8 5 12 12 H 1.08001 * 120.00172 * 245.01750 * 11 10 8 13 13 C 1.38894 * 119.99450 * 65.02007 * 11 10 8 14 14 N 1.31419 * 120.00010 * 53.26657 * 13 11 10 15 15 Si 1.86796 * 119.99837 * 233.25667 * 13 11 10 16 16 H 1.48504 * 109.46658 * 90.00408 * 15 13 11 17 17 H 1.48499 * 109.47316 * 210.00243 * 15 13 11 18 18 H 1.48501 * 109.47536 * 330.00753 * 15 13 11 19 19 C 1.39787 * 120.00246 * 358.92857 * 10 8 5 20 20 C 1.38956 * 120.07611 * 266.13533 * 19 10 8 21 21 C 1.38082 * 119.91958 * 179.76992 * 20 19 10 22 22 C 1.38306 * 120.08133 * 0.49797 * 21 20 19 23 23 C 1.38310 * 120.15162 * 359.75399 * 22 21 20 24 24 C 1.38075 * 120.08108 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46731 * 299.99823 * 1 2 3 27 27 H 1.09001 * 109.47345 * 60.00013 * 1 2 3 28 28 H 1.09007 * 109.46781 * 240.00412 * 2 1 3 29 29 H 1.08996 * 109.47674 * 120.00265 * 2 1 3 30 30 H 1.08998 * 109.47290 * 60.00519 * 3 2 1 31 31 H 1.09001 * 109.47116 * 300.00127 * 3 2 1 32 32 H 1.08998 * 109.47038 * 59.99999 * 4 3 2 33 33 H 1.09001 * 109.47055 * 299.99799 * 4 3 2 34 34 H 1.09003 * 109.47342 * 69.40921 * 7 5 4 35 35 H 1.09000 * 109.46953 * 189.40467 * 7 5 4 36 36 H 1.08996 * 109.47608 * 309.40662 * 7 5 4 37 37 H 0.96995 * 119.99874 * 184.96905 * 14 13 11 38 38 H 1.08003 * 120.04222 * 0.02562 * 20 19 10 39 39 H 1.08002 * 119.95904 * 180.25252 * 21 20 19 40 40 H 1.08001 * 119.92609 * 179.72045 * 22 21 20 41 41 H 1.07997 * 119.95938 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.04491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4235 0.8423 7 6 3.6747 3.5698 -1.3067 8 6 5.5819 2.8869 0.1233 9 8 6.2693 3.1380 -0.8438 10 7 6.1610 2.6147 1.3094 11 6 7.5281 2.5946 1.4165 12 1 8.0379 1.6720 1.6514 13 6 8.2570 3.7610 1.2228 14 7 7.9577 4.8438 1.9047 15 14 9.6629 3.7904 -0.0068 16 1 9.1453 4.1871 -1.3410 17 1 10.6884 4.7685 0.4371 18 1 10.2726 2.4392 -0.0942 19 6 5.3683 2.3529 2.4306 20 6 5.0361 3.3812 3.3041 21 6 4.2489 3.1199 4.4080 22 6 3.7997 1.8345 4.6505 23 6 4.1327 0.8075 3.7860 24 6 4.9149 1.0626 2.6771 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 2.5949 3.7186 -1.3194 35 1 4.1753 4.5352 -1.3815 36 1 3.9650 2.9437 -2.1503 37 1 8.4181 5.6770 1.7185 38 1 5.3897 4.3845 3.1176 39 1 3.9869 3.9195 5.0852 40 1 3.1878 1.6320 5.5171 41 1 3.7806 -0.1951 3.9785 42 1 5.1750 0.2602 2.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282130797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -34.420456 kcal Electronic energy + Delta-G solvation = -22222.561504 eV Core-core repulsion = 19166.595153 eV Total energy + Delta-G solvation = -3055.966352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32907 -39.26237 -37.31527 -36.19433 -34.41593 -33.79368 -31.71479 -30.26173 -29.39677 -27.49660 -25.60124 -23.76236 -23.28998 -22.68211 -21.68667 -20.48560 -19.24927 -18.15646 -17.15611 -17.01058 -16.41697 -16.14392 -16.02039 -15.48956 -15.35163 -14.64797 -14.54523 -14.21784 -14.09453 -14.03463 -13.91809 -13.37897 -13.28006 -13.25345 -12.97625 -12.73173 -12.49016 -12.35573 -12.22775 -12.04864 -11.94263 -11.83505 -11.69438 -11.47946 -11.23151 -10.54988 -10.39996 -9.62665 -9.56637 -9.23965 -8.56516 -6.21896 0.59027 0.65352 1.25443 1.38975 1.48241 2.02243 2.26330 2.65605 3.03533 3.09835 3.81556 3.93662 4.02106 4.20973 4.26147 4.29335 4.34389 4.40737 4.42989 4.59058 4.66631 4.74471 4.82611 4.85834 4.89264 4.96966 5.00910 5.08863 5.14495 5.20429 5.27609 5.30105 5.32071 5.36898 5.42225 5.52866 5.59018 5.65536 5.75082 5.90902 6.14356 6.30869 6.90733 7.01285 7.47304 8.12244 8.33576 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.007119 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.390355 B = 3932.442154 C = 5015.983774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.113 4.113 5 C -0.098 4.098 6 H 0.081 0.919 7 C -0.121 4.121 8 C 0.481 3.519 9 O -0.600 6.600 10 N -0.425 5.425 11 C -0.416 4.416 12 H 0.061 0.939 13 C 0.087 3.913 14 N -0.816 5.816 15 Si 0.920 3.080 16 H -0.290 1.290 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.131 3.869 20 C -0.136 4.136 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.107 4.107 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.273 0.727 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 -6.913 3.272 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.151 4.151 5 C -0.120 4.120 6 H 0.100 0.900 7 C -0.178 4.178 8 C 0.272 3.728 9 O -0.482 6.482 10 N -0.144 5.144 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.128 4.128 14 N -0.444 5.444 15 Si 0.744 3.256 16 H -0.217 1.217 17 H -0.202 1.202 18 H -0.188 1.188 19 C 0.042 3.958 20 C -0.155 4.155 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.156 4.156 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.193 -6.596 2.921 16.819 hybrid contribution 1.541 0.670 -0.775 1.851 sum -13.651 -5.926 2.146 15.036 Atomic orbital electron populations 1.21743 0.94787 1.02004 1.02000 1.21505 0.96615 0.95918 1.01987 1.21561 0.92593 0.97863 1.02410 1.21815 0.97578 0.92929 1.02736 1.21225 0.90450 0.99992 1.00340 0.90046 1.21563 1.01552 0.99258 0.95436 1.21612 0.91057 0.77573 0.82570 1.90454 1.66693 1.52272 1.38812 1.41008 1.04288 1.64319 1.04805 1.18433 0.80606 0.94104 1.60692 0.92185 1.25798 0.98628 0.95097 0.93278 1.70517 1.42087 1.02949 1.28893 0.86164 0.79154 0.78692 0.81576 1.21709 1.20163 1.18760 1.18547 0.92514 0.93715 0.91003 1.21450 0.99086 0.98664 0.96341 1.21260 0.97370 0.98530 0.96194 1.21418 1.00745 0.91873 1.00316 1.21274 0.97392 1.00585 0.93230 1.21321 1.00205 0.94853 0.99228 0.92090 0.92462 0.92634 0.92384 0.91905 0.91718 0.91315 0.92910 0.90416 0.89197 0.94942 0.92865 0.91704 0.88902 0.84355 0.82623 0.82899 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.40 5.93 30.60 0.18 -2.21 16 3 C -0.11 -2.49 4.98 30.60 0.15 -2.34 16 4 C -0.11 -3.55 4.56 30.60 0.14 -3.41 16 5 C -0.10 -3.79 2.01 -11.54 -0.02 -3.81 16 6 H 0.08 3.10 7.44 -2.39 -0.02 3.08 16 7 C -0.12 -4.19 8.08 71.98 0.58 -3.61 16 8 C 0.48 24.68 6.70 87.66 0.59 25.26 16 9 O -0.60 -35.46 15.26 -3.03 -0.05 -35.51 16 10 N -0.43 -22.26 2.57 -458.88 -1.18 -23.44 16 11 C -0.42 -24.39 8.46 84.02 0.71 -23.68 16 12 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 13 C 0.09 5.07 4.64 84.91 0.39 5.47 16 14 N -0.82 -47.17 13.95 21.65 0.30 -46.87 16 15 Si 0.92 47.31 29.39 68.60 2.02 49.33 16 16 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.26 -13.18 7.11 99.48 0.71 -12.48 16 19 C 0.13 5.76 3.55 38.22 0.14 5.90 16 20 C -0.14 -5.67 9.82 22.41 0.22 -5.45 16 21 C -0.12 -3.58 10.04 22.25 0.22 -3.36 16 22 C -0.13 -3.18 10.04 22.30 0.22 -2.96 16 23 C -0.11 -2.85 10.04 22.25 0.22 -2.63 16 24 C -0.14 -4.86 7.35 22.41 0.16 -4.70 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.50 6.79 -2.39 -0.02 1.48 16 32 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.08 2.51 3.74 -2.39 -0.01 2.50 16 34 H 0.09 2.38 7.05 -2.39 -0.02 2.36 16 35 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 36 H 0.05 1.87 8.10 -2.39 -0.02 1.86 16 37 H 0.27 14.77 8.32 -92.71 -0.77 14.00 16 38 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.12 4.06 7.25 -2.91 -0.02 4.04 16 Total: -1.00 -70.91 342.58 6.70 -64.21 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.98 Total: 15.42 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.63 Total: -23.15 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -0.88 Total: -70.31 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.05 Total: -35.51 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.02 Total: 49.33 kcal Total: -70.91 6.70 -64.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282130797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds