Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 C 1.52991 * 109.47474 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47478 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47419 * 305.00417 * 5 4 3 7 7 C 1.53002 * 109.47002 * 64.99898 * 5 4 3 8 8 C 1.50693 * 109.47463 * 184.99978 * 5 4 3 9 9 O 1.21278 * 120.00214 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00364 * 179.97438 * 8 5 4 11 11 C 1.39240 * 120.00659 * 175.70556 * 10 8 5 12 12 C 1.39479 * 119.83808 * 215.02415 * 11 10 8 13 13 C 1.36378 * 120.16903 * 179.75787 * 12 11 10 14 14 C 1.40870 * 119.82493 * 0.51454 * 13 12 11 15 15 C 1.41147 * 120.15977 * 179.71867 * 14 13 12 16 16 H 1.08007 * 120.00001 * 214.79954 * 15 14 13 17 17 C 1.39909 * 120.00305 * 34.79732 * 15 14 13 18 18 N 1.30875 * 119.99779 * 355.57303 * 17 15 14 19 19 Si 1.86801 * 120.00115 * 175.57233 * 17 15 14 20 20 H 1.48502 * 109.47235 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47187 * 119.99730 * 19 17 15 22 22 H 1.48501 * 109.46872 * 240.00136 * 19 17 15 23 23 C 1.40866 * 119.67390 * 359.74023 * 14 13 12 24 24 C 1.36371 * 119.82901 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.47274 * 299.99882 * 1 2 3 26 26 H 1.09003 * 109.47529 * 59.99734 * 1 2 3 27 27 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47274 * 240.00118 * 2 1 3 29 29 H 1.09003 * 109.47529 * 120.00266 * 2 1 3 30 30 H 1.09004 * 109.46774 * 59.99812 * 3 2 1 31 31 H 1.09003 * 109.46960 * 300.00615 * 3 2 1 32 32 H 1.09004 * 109.47274 * 60.00118 * 4 3 2 33 33 H 1.09003 * 109.47529 * 300.00266 * 4 3 2 34 34 H 1.09000 * 109.47353 * 179.97438 * 7 5 4 35 35 H 1.09004 * 109.47394 * 60.00372 * 7 5 4 36 36 H 1.08996 * 109.47131 * 300.00035 * 7 5 4 37 37 H 0.97006 * 119.99795 * 355.71340 * 10 8 5 38 38 H 1.08007 * 119.91183 * 0.02562 * 12 11 10 39 39 H 1.08001 * 120.08409 * 180.25134 * 13 12 11 40 40 H 0.97000 * 119.99488 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.08570 * 179.97438 * 23 14 13 42 42 H 1.08006 * 119.91651 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6457 3.4243 -0.8405 7 6 3.6747 3.5686 1.3087 8 6 5.5819 2.8867 -0.1219 9 8 6.1851 1.8376 -0.2018 10 7 6.2549 4.0542 -0.1432 11 6 7.6471 4.0551 -0.1668 12 6 8.3520 5.0522 0.5072 13 6 9.7157 5.0567 0.4927 14 6 10.4121 4.0570 -0.2145 15 6 11.8234 4.0584 -0.2392 16 1 12.3483 3.7326 -1.1251 17 6 12.5423 4.4816 0.8840 18 7 11.9086 4.9578 1.9253 19 14 14.4068 4.3671 0.8971 20 1 14.8769 3.7976 -0.3912 21 1 14.9847 5.7228 1.0798 22 1 14.8409 3.4894 2.0135 23 6 9.6932 3.0564 -0.8973 24 6 8.3298 3.0617 -0.8688 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.0384 4.5961 1.3094 35 1 4.1089 3.0293 2.1506 36 1 2.5884 3.5673 1.3978 37 1 5.7694 4.8940 -0.1421 38 1 7.8165 5.8202 1.0457 39 1 10.2602 5.8271 1.0185 40 1 12.4071 5.2516 2.7038 41 1 10.2203 2.2871 -1.4419 42 1 7.7771 2.2954 -1.3921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282460643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -64.535575 kcal Electronic energy + Delta-G solvation = -20502.949343 eV Core-core repulsion = 17445.677102 eV Total energy + Delta-G solvation = -3057.272241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37030 -39.25623 -37.28574 -36.13533 -34.84828 -34.08977 -31.50087 -30.81801 -29.41278 -27.04865 -25.93301 -23.93562 -23.07354 -22.29875 -21.63206 -20.61500 -19.28371 -18.30364 -17.76554 -17.01904 -16.69878 -16.10710 -15.79475 -15.50048 -15.14165 -14.61918 -14.52786 -14.27645 -14.17727 -13.99875 -13.59865 -13.49378 -13.24444 -13.05786 -12.89487 -12.75325 -12.56600 -12.45749 -12.16775 -11.86765 -11.81881 -11.73374 -11.50873 -11.40035 -11.29662 -11.21343 -10.74126 -10.46703 -9.48212 -8.73508 -8.51470 -6.34152 0.78708 1.11985 1.38713 1.43733 1.53948 1.81912 2.23252 2.37913 2.79670 3.64101 3.74169 3.79300 3.97762 4.23045 4.30345 4.31227 4.37987 4.48257 4.56899 4.64852 4.81208 4.86461 4.92296 4.94740 5.01335 5.06240 5.11981 5.13657 5.15258 5.24997 5.30524 5.35212 5.40541 5.43894 5.50019 5.56146 5.68399 5.90504 6.02103 6.13403 6.38034 6.66400 6.75103 6.95625 6.99134 7.42654 8.41513 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045268 B = 0.002989 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.395117 B = 9366.208764 C = 9603.300037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.097 4.097 6 H 0.124 0.876 7 C -0.142 4.142 8 C 0.496 3.504 9 O -0.579 6.579 10 N -0.645 5.645 11 C 0.022 3.978 12 C -0.120 4.120 13 C -0.159 4.159 14 C 0.066 3.934 15 C -0.497 4.497 16 H 0.072 0.928 17 C 0.026 3.974 18 N -0.842 5.842 19 Si 0.989 3.011 20 H -0.261 1.261 21 H -0.262 1.262 22 H -0.269 1.269 23 C -0.222 4.222 24 C -0.099 4.099 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.094 0.906 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.136 -0.431 -0.844 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.118 4.118 6 H 0.142 0.858 7 C -0.199 4.199 8 C 0.286 3.714 9 O -0.459 6.459 10 N -0.290 5.290 11 C -0.072 4.072 12 C -0.140 4.140 13 C -0.179 4.179 14 C 0.063 3.937 15 C -0.528 4.528 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.810 3.190 20 H -0.185 1.185 21 H -0.186 1.186 22 H -0.194 1.194 23 C -0.242 4.242 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.719 -1.071 -0.658 18.761 hybrid contribution 1.092 0.020 0.093 1.096 sum -17.627 -1.052 -0.565 17.667 Atomic orbital electron populations 1.21751 0.94763 1.01875 1.02263 1.21551 0.96680 0.96932 1.01571 1.21638 0.92753 0.97166 1.03297 1.21376 0.96593 0.93967 1.01710 1.21352 0.87945 0.99869 1.02601 0.85815 1.21852 1.03655 1.00362 0.94039 1.21704 0.91788 0.82857 0.75062 1.90659 1.71352 1.33198 1.50666 1.43004 1.04114 1.09613 1.72258 1.17371 0.82883 1.01282 1.05675 1.20579 0.94313 0.99360 0.99712 1.21191 0.92934 0.99975 1.03791 1.18045 0.94245 0.90088 0.91298 1.19737 0.91876 1.40524 1.00672 0.91020 1.26756 1.05874 0.91754 0.94154 1.69832 1.39349 1.32673 1.05111 0.85044 0.75690 0.79033 0.79187 1.18458 1.18612 1.19436 1.20937 0.93861 1.00555 1.08855 1.20510 0.93892 0.98501 0.99018 0.92178 0.92244 0.92692 0.92763 0.92719 0.90319 0.90709 0.93158 0.93323 0.91028 0.93783 0.88491 0.74546 0.85643 0.86247 0.90471 0.88731 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.13 -2.01 5.93 30.59 0.18 -1.83 16 3 C -0.11 -1.67 4.97 30.59 0.15 -1.51 16 4 C -0.10 -2.18 4.03 30.59 0.12 -2.06 16 5 C -0.10 -2.06 2.72 -11.54 -0.03 -2.09 16 6 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 7 C -0.14 -2.37 8.85 71.98 0.64 -1.73 16 8 C 0.50 16.63 6.99 87.65 0.61 17.24 16 9 O -0.58 -25.40 13.34 -3.02 -0.04 -25.44 16 10 N -0.65 -21.53 5.17 -303.12 -1.57 -23.09 16 11 C 0.02 0.96 6.31 38.56 0.24 1.20 16 12 C -0.12 -5.43 9.90 22.13 0.22 -5.21 16 13 C -0.16 -8.43 8.62 22.48 0.19 -8.24 16 14 C 0.07 3.70 5.55 -21.28 -0.12 3.58 16 15 C -0.50 -27.89 9.02 23.39 0.21 -27.67 16 16 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 17 C 0.03 1.37 5.42 85.24 0.46 1.83 16 18 N -0.84 -45.02 10.60 21.82 0.23 -44.79 16 19 Si 0.99 39.78 29.56 68.60 2.03 41.80 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.22 -11.93 9.74 22.48 0.22 -11.71 16 24 C -0.10 -4.94 8.61 22.13 0.19 -4.75 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.97 6.56 -2.38 -0.02 0.96 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.31 7.96 -2.38 -0.02 1.29 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 35 H 0.04 0.90 8.14 -2.38 -0.02 0.89 16 36 H 0.10 1.08 6.56 -2.39 -0.02 1.07 16 37 H 0.42 10.17 8.37 -92.70 -0.78 9.40 16 38 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.12 6.57 6.13 -2.91 -0.02 6.55 16 40 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 41 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -68.43 341.57 4.89 -63.54 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.23 Total: 32.02 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 4.01 Total: -44.04 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -1.33 Total: -67.88 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.04 Total: -25.44 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -68.43 4.89 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282460643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.997 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds