Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 C 1.53000 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46700 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47377 * 55.00443 * 5 4 3 7 7 C 1.53006 * 109.47205 * 294.99865 * 5 4 3 8 8 C 1.50709 * 109.46945 * 175.00428 * 5 4 3 9 9 O 1.21280 * 119.99828 * 359.97438 * 8 5 4 10 10 N 1.34772 * 119.99649 * 179.72574 * 8 5 4 11 11 C 1.39249 * 119.99613 * 175.98391 * 10 8 5 12 12 C 1.39476 * 119.82928 * 215.00808 * 11 10 8 13 13 C 1.36387 * 120.16430 * 179.71814 * 12 11 10 14 14 C 1.40864 * 119.82684 * 0.57626 * 13 12 11 15 15 C 1.41153 * 120.16516 * 179.67813 * 14 13 12 16 16 H 1.08000 * 119.99780 * 214.80445 * 15 14 13 17 17 C 1.39905 * 119.99828 * 34.80262 * 15 14 13 18 18 N 1.30873 * 120.00159 * 355.54930 * 17 15 14 19 19 Si 1.86800 * 119.99708 * 175.54725 * 17 15 14 20 20 H 1.48506 * 109.46947 * 90.00537 * 19 17 15 21 21 H 1.48498 * 109.46976 * 210.00139 * 19 17 15 22 22 H 1.48499 * 109.47322 * 330.00229 * 19 17 15 23 23 C 1.40875 * 119.67299 * 359.69742 * 14 13 12 24 24 C 1.36372 * 119.82919 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47100 * 59.99319 * 1 2 3 26 26 H 1.08999 * 109.47463 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47011 * 299.99715 * 1 2 3 28 28 H 1.09004 * 109.47011 * 240.00285 * 2 1 3 29 29 H 1.09002 * 109.47565 * 120.00426 * 2 1 3 30 30 H 1.09004 * 109.46837 * 60.00178 * 3 2 1 31 31 H 1.08994 * 109.47332 * 300.00037 * 3 2 1 32 32 H 1.08999 * 109.46980 * 60.00830 * 4 3 2 33 33 H 1.08995 * 109.47585 * 299.99934 * 4 3 2 34 34 H 1.08999 * 109.46823 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.47001 * 300.00603 * 7 5 4 36 36 H 1.08997 * 109.46526 * 60.00510 * 7 5 4 37 37 H 0.96994 * 120.00742 * 355.98072 * 10 8 5 38 38 H 1.08001 * 119.91928 * 359.97438 * 12 11 10 39 39 H 1.07998 * 120.08161 * 180.25120 * 13 12 11 40 40 H 0.96994 * 120.00179 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.08657 * 179.97438 * 23 14 13 42 42 H 1.07996 * 119.91652 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6451 3.4237 0.8431 7 6 3.6758 3.5694 -1.3061 8 6 5.5819 2.8867 0.1257 9 8 6.1849 1.8375 0.2063 10 7 6.2553 4.0540 0.1422 11 6 7.6335 4.0599 0.3409 12 6 8.2267 5.0990 1.0577 13 6 9.5752 5.1086 1.2614 14 6 10.3707 4.0719 0.7353 15 6 11.7678 4.0784 0.9360 16 1 12.4257 3.7029 0.1662 17 6 12.3004 4.5712 2.1322 18 7 11.5111 5.1060 3.0287 19 14 14.1382 4.4658 2.4497 20 1 14.8000 5.6932 1.9390 21 1 14.3821 4.3428 3.9094 22 1 14.6936 3.2776 1.7532 23 6 9.7649 3.0289 0.0075 24 6 8.4146 3.0299 -0.1831 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 4.0395 4.5969 -1.3058 35 1 4.1107 3.0305 -2.1479 36 1 2.5895 3.5681 -1.3960 37 1 5.7801 4.8900 0.0156 38 1 7.6161 5.8959 1.4560 39 1 10.0326 5.9118 1.8201 40 1 11.8802 5.4473 3.8582 41 1 10.3684 2.2309 -0.3991 42 1 7.9487 2.2308 -0.7404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282460646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = -48.444324 kcal Electronic energy + Delta-G solvation = -20489.452570 eV Core-core repulsion = 17432.878098 eV Total energy + Delta-G solvation = -3056.574472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87746 -37.52587 -36.25522 -34.39459 -33.54223 -32.72014 -29.59432 -29.13663 -28.39193 -25.54689 -24.73474 -22.61943 -21.44396 -20.97629 -20.36062 -19.17163 -17.32353 -16.88839 -16.24379 -15.80127 -15.16599 -14.88248 -14.35834 -13.99214 -13.80245 -13.55274 -13.35991 -12.97981 -12.69504 -12.57937 -12.28252 -12.12283 -11.80250 -11.69114 -11.43059 -11.34545 -11.15196 -11.05980 -11.01622 -10.90578 -10.72486 -10.69186 -10.54207 -9.96763 -9.46735 -9.37627 -9.02510 -8.81531 -7.52569 -6.83436 -6.59886 -4.32275 2.58891 3.05027 3.09865 3.11473 3.15476 3.39336 3.75501 3.99570 4.61408 4.71602 4.76962 4.81910 4.99860 5.03475 5.09212 5.32140 5.45054 5.51219 5.58603 5.63865 5.68010 5.75326 5.82473 5.85920 5.94501 6.03436 6.09105 6.21295 6.27946 6.37322 6.47720 6.79380 6.95447 7.09295 7.24011 7.32318 7.66040 7.78199 7.90579 8.08607 8.30427 8.34365 8.64873 8.81026 8.94766 9.03057 10.31246 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043913 B = 0.002971 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.468103 B = 9422.558525 C = 9600.659440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.110 4.110 6 H 0.093 0.907 7 C -0.145 4.145 8 C 0.501 3.499 9 O -0.532 6.532 10 N -0.653 5.653 11 C 0.005 3.995 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.813 5.813 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.086 4.086 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.394 0.606 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 -1.665 -4.525 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.202 4.202 8 C 0.288 3.712 9 O -0.408 6.408 10 N -0.296 5.296 11 C -0.087 4.087 12 C -0.143 4.143 13 C -0.161 4.161 14 C 0.096 3.904 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.440 5.440 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.225 4.225 24 C -0.106 4.106 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.167 -2.319 -4.219 16.869 hybrid contribution 0.563 0.419 0.356 0.787 sum -15.604 -1.900 -3.863 16.187 Atomic orbital electron populations 1.21778 0.96112 1.01416 1.01638 1.21531 0.95513 0.97099 1.02232 1.21689 0.95416 0.96736 1.01948 1.21399 0.94341 0.94436 1.03624 1.21323 0.92626 0.99080 1.00098 0.88918 1.21829 1.01866 1.00289 0.96237 1.20605 0.89413 0.84072 0.77113 1.90673 1.69834 1.31396 1.48941 1.43051 1.07350 1.08370 1.70791 1.17302 0.80860 1.01664 1.08888 1.20325 0.95976 0.97950 1.00009 1.21194 0.91674 1.00020 1.03248 1.17724 0.93699 0.89281 0.89685 1.19487 0.92178 1.36308 1.01219 0.90645 1.25879 1.00169 0.92750 0.95782 1.69762 1.36524 1.30449 1.07291 0.86198 0.82175 0.79550 0.78049 1.19548 1.20322 1.18740 1.20816 0.93448 0.99688 1.08586 1.20395 0.93481 0.97441 0.99300 0.92883 0.92950 0.92848 0.92004 0.91961 0.92107 0.91818 0.91339 0.91071 0.92266 0.92072 0.91496 0.77207 0.89141 0.85046 0.91184 0.88628 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.12 -1.07 4.97 -26.73 -0.13 -1.21 16 4 C -0.10 -1.18 4.03 -26.73 -0.11 -1.29 16 5 C -0.11 -1.32 2.73 -91.76 -0.25 -1.57 16 6 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 7 C -0.14 -1.40 8.84 37.16 0.33 -1.07 16 8 C 0.50 8.74 6.99 -10.98 -0.08 8.66 16 9 O -0.53 -11.57 13.34 5.56 0.07 -11.49 16 10 N -0.65 -11.57 5.22 -9.73 -0.05 -11.62 16 11 C 0.01 0.12 6.31 -83.57 -0.53 -0.41 16 12 C -0.12 -2.83 9.90 -39.79 -0.39 -3.22 16 13 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16 14 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 15 C -0.46 -12.46 9.02 -37.85 -0.34 -12.80 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 18 N -0.81 -21.40 10.60 55.55 0.59 -20.81 16 19 Si 0.92 19.22 29.56 -169.99 -5.03 14.20 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 24 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 34 H 0.06 0.52 7.46 -51.93 -0.39 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 37 H 0.39 5.50 8.11 -40.82 -0.33 5.17 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 42 H 0.11 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -30.22 341.16 -8.97 -39.19 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.66 Total: 8.66 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.04 Total: -23.27 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.54 Total: -32.43 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.22 -8.97 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282460646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.253 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds