Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 C 1.53000 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46700 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47377 * 55.00443 * 5 4 3 7 7 C 1.53006 * 109.47205 * 294.99865 * 5 4 3 8 8 C 1.50709 * 109.46945 * 175.00428 * 5 4 3 9 9 O 1.21280 * 119.99828 * 359.97438 * 8 5 4 10 10 N 1.34772 * 119.99649 * 179.72574 * 8 5 4 11 11 C 1.39249 * 119.99613 * 175.98391 * 10 8 5 12 12 C 1.39476 * 119.82928 * 215.00808 * 11 10 8 13 13 C 1.36387 * 120.16430 * 179.71814 * 12 11 10 14 14 C 1.40864 * 119.82684 * 0.57626 * 13 12 11 15 15 C 1.41153 * 120.16516 * 179.67813 * 14 13 12 16 16 H 1.08000 * 119.99780 * 214.80445 * 15 14 13 17 17 C 1.39905 * 119.99828 * 34.80262 * 15 14 13 18 18 N 1.30873 * 120.00159 * 355.54930 * 17 15 14 19 19 Si 1.86800 * 119.99708 * 175.54725 * 17 15 14 20 20 H 1.48506 * 109.46947 * 90.00537 * 19 17 15 21 21 H 1.48498 * 109.46976 * 210.00139 * 19 17 15 22 22 H 1.48499 * 109.47322 * 330.00229 * 19 17 15 23 23 C 1.40875 * 119.67299 * 359.69742 * 14 13 12 24 24 C 1.36372 * 119.82919 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47100 * 59.99319 * 1 2 3 26 26 H 1.08999 * 109.47463 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47011 * 299.99715 * 1 2 3 28 28 H 1.09004 * 109.47011 * 240.00285 * 2 1 3 29 29 H 1.09002 * 109.47565 * 120.00426 * 2 1 3 30 30 H 1.09004 * 109.46837 * 60.00178 * 3 2 1 31 31 H 1.08994 * 109.47332 * 300.00037 * 3 2 1 32 32 H 1.08999 * 109.46980 * 60.00830 * 4 3 2 33 33 H 1.08995 * 109.47585 * 299.99934 * 4 3 2 34 34 H 1.08999 * 109.46823 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.47001 * 300.00603 * 7 5 4 36 36 H 1.08997 * 109.46526 * 60.00510 * 7 5 4 37 37 H 0.96994 * 120.00742 * 355.98072 * 10 8 5 38 38 H 1.08001 * 119.91928 * 359.97438 * 12 11 10 39 39 H 1.07998 * 120.08161 * 180.25120 * 13 12 11 40 40 H 0.96994 * 120.00179 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.08657 * 179.97438 * 23 14 13 42 42 H 1.07996 * 119.91652 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6451 3.4237 0.8431 7 6 3.6758 3.5694 -1.3061 8 6 5.5819 2.8867 0.1257 9 8 6.1849 1.8375 0.2063 10 7 6.2553 4.0540 0.1422 11 6 7.6335 4.0599 0.3409 12 6 8.2267 5.0990 1.0577 13 6 9.5752 5.1086 1.2614 14 6 10.3707 4.0719 0.7353 15 6 11.7678 4.0784 0.9360 16 1 12.4257 3.7029 0.1662 17 6 12.3004 4.5712 2.1322 18 7 11.5111 5.1060 3.0287 19 14 14.1382 4.4658 2.4497 20 1 14.8000 5.6932 1.9390 21 1 14.3821 4.3428 3.9094 22 1 14.6936 3.2776 1.7532 23 6 9.7649 3.0289 0.0075 24 6 8.4146 3.0299 -0.1831 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 4.0395 4.5969 -1.3058 35 1 4.1107 3.0305 -2.1479 36 1 2.5895 3.5681 -1.3960 37 1 5.7801 4.8900 0.0156 38 1 7.6161 5.8959 1.4560 39 1 10.0326 5.9118 1.8201 40 1 11.8802 5.4473 3.8582 41 1 10.3684 2.2309 -0.3991 42 1 7.9487 2.2308 -0.7404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282460646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -64.485639 kcal Electronic energy + Delta-G solvation = -20490.148174 eV Core-core repulsion = 17432.878098 eV Total energy + Delta-G solvation = -3057.270076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37327 -39.25667 -37.28534 -36.13723 -34.85178 -34.08906 -31.50243 -30.81878 -29.41362 -27.03834 -25.93659 -23.93088 -23.08767 -22.30184 -21.65281 -20.55376 -19.27227 -18.36358 -17.77858 -17.02972 -16.69619 -16.13512 -15.68392 -15.54615 -15.07126 -14.75661 -14.56256 -14.20702 -14.12009 -14.00102 -13.62926 -13.47606 -13.24011 -13.06498 -12.85172 -12.81340 -12.54969 -12.46697 -12.16537 -11.87599 -11.82419 -11.73284 -11.51210 -11.40375 -11.31723 -11.19176 -10.72666 -10.48028 -9.48306 -8.73582 -8.51350 -6.34153 0.78687 1.11870 1.38721 1.44436 1.53010 1.82966 2.23269 2.37150 2.79605 3.64377 3.74038 3.78538 3.97486 4.22572 4.30621 4.31245 4.38074 4.48334 4.56423 4.65585 4.81240 4.86723 4.92212 4.94737 5.01223 5.06631 5.10641 5.13556 5.15379 5.24867 5.31171 5.34858 5.40485 5.43829 5.49948 5.56037 5.68273 5.90414 6.01932 6.13238 6.37989 6.66215 6.74904 6.95530 6.99024 7.42426 8.41460 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043913 B = 0.002971 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.468103 B = 9422.558525 C = 9600.659440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.120 0.880 7 C -0.142 4.142 8 C 0.497 3.503 9 O -0.579 6.579 10 N -0.645 5.645 11 C 0.021 3.979 12 C -0.120 4.120 13 C -0.159 4.159 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.842 5.842 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.222 4.222 24 C -0.098 4.098 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.094 0.906 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.670 -0.597 -4.494 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.119 4.119 6 H 0.137 0.863 7 C -0.199 4.199 8 C 0.286 3.714 9 O -0.459 6.459 10 N -0.290 5.290 11 C -0.073 4.073 12 C -0.140 4.140 13 C -0.179 4.179 14 C 0.064 3.936 15 C -0.529 4.529 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.242 4.242 24 C -0.119 4.119 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.254 0.746 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.292 -1.223 -4.206 18.809 hybrid contribution 1.054 0.039 0.311 1.099 sum -17.239 -1.185 -3.895 17.713 Atomic orbital electron populations 1.21752 0.94769 1.01880 1.02256 1.21550 0.96678 0.96915 1.01582 1.21638 0.92781 0.97178 1.03270 1.21378 0.96579 0.93965 1.01721 1.21368 0.87938 0.99876 1.02680 0.86256 1.21859 1.03751 1.00346 0.93930 1.21702 0.91710 0.82896 0.75090 1.90660 1.71368 1.33121 1.50717 1.43010 1.05429 1.09961 1.70612 1.17373 0.83139 1.00129 1.06627 1.20583 0.95288 0.98864 0.99255 1.21193 0.93032 0.99718 1.03972 1.18041 0.94496 0.90211 0.90889 1.19712 0.92480 1.38318 1.02358 0.90989 1.26753 1.05029 0.91816 0.94914 1.69822 1.38542 1.30811 1.07783 0.85093 0.75987 0.79754 0.78160 1.18303 1.19362 1.18754 1.20937 0.94319 0.99796 1.09157 1.20502 0.93211 0.98252 0.99887 0.92061 0.92676 0.92378 0.92503 0.92949 0.90998 0.90090 0.92900 0.93534 0.90987 0.93272 0.88551 0.74561 0.85646 0.86236 0.90456 0.88741 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.13 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.11 -1.68 4.97 30.59 0.15 -1.53 16 4 C -0.10 -2.19 4.03 30.60 0.12 -2.06 16 5 C -0.10 -2.09 2.73 -11.53 -0.03 -2.12 16 6 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 7 C -0.14 -2.21 8.84 71.98 0.64 -1.58 16 8 C 0.50 16.68 6.99 87.66 0.61 17.29 16 9 O -0.58 -25.43 13.34 -3.03 -0.04 -25.47 16 10 N -0.65 -21.61 5.22 -303.10 -1.58 -23.19 16 11 C 0.02 0.93 6.31 38.56 0.24 1.17 16 12 C -0.12 -5.45 9.90 22.14 0.22 -5.23 16 13 C -0.16 -8.45 8.61 22.48 0.19 -8.26 16 14 C 0.07 3.72 5.55 -21.28 -0.12 3.61 16 15 C -0.50 -27.91 9.02 23.39 0.21 -27.70 16 16 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 17 C 0.03 1.39 5.42 85.24 0.46 1.85 16 18 N -0.84 -45.04 10.60 21.82 0.23 -44.81 16 19 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 C -0.22 -11.94 9.74 22.48 0.22 -11.72 16 24 C -0.10 -4.91 8.61 22.13 0.19 -4.72 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.97 6.57 -2.39 -0.02 0.96 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 34 H 0.07 0.97 7.46 -2.39 -0.02 0.95 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.00 6.57 -2.39 -0.02 0.98 16 37 H 0.42 10.23 8.11 -92.71 -0.75 9.48 16 38 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 40 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 41 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.11 5.23 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -68.33 341.16 4.90 -63.43 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.25 Total: 32.21 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.01 Total: -43.93 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -1.35 Total: -68.00 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.04 Total: -25.47 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -68.33 4.90 -63.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282460646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.055 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds