Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 112.90391 * 2 1 4 4 C 1.53783 * 113.61080 * 228.75296 * 2 1 3 5 5 C 1.53779 * 87.08193 * 270.87892 * 4 2 1 6 6 C 1.53779 * 87.08215 * 334.56999 * 5 4 2 7 7 H 1.09000 * 113.61482 * 270.80133 * 6 5 4 8 8 N 1.46898 * 113.61578 * 139.97788 * 6 5 4 9 9 C 1.46896 * 111.00044 * 104.50426 * 8 6 5 10 10 C 1.50703 * 109.47616 * 180.02562 * 9 8 6 11 11 C 1.38301 * 119.93131 * 89.99737 * 10 9 8 12 12 C 1.38098 * 120.06892 * 180.02562 * 11 10 9 13 13 C 1.38875 * 119.93063 * 359.97438 * 12 11 10 14 14 O 1.35755 * 120.06689 * 180.02562 * 13 12 11 15 15 C 1.34822 * 117.00073 * 5.53321 * 14 13 12 16 16 H 1.08004 * 120.00474 * 354.94658 * 15 14 13 17 17 C 1.38660 * 120.00298 * 174.94008 * 15 14 13 18 18 N 1.31556 * 119.99320 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46999 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47222 * 299.99956 * 19 17 15 22 22 H 1.48497 * 109.47585 * 60.00135 * 19 17 15 23 23 C 1.38883 * 119.86225 * 0.27186 * 13 12 11 24 24 C 1.38101 * 119.92844 * 359.45102 * 23 13 12 25 25 H 1.08999 * 109.46709 * 288.74078 * 1 2 3 26 26 H 1.08995 * 109.47501 * 48.74350 * 1 2 3 27 27 H 1.09009 * 109.46870 * 168.74923 * 1 2 3 28 28 H 1.09007 * 109.46940 * 191.25424 * 3 2 1 29 29 H 1.08998 * 109.47519 * 311.25458 * 3 2 1 30 30 H 1.09000 * 109.47371 * 71.25662 * 3 2 1 31 31 H 1.09007 * 113.61130 * 156.33198 * 4 2 1 32 32 H 1.09002 * 113.69095 * 25.44376 * 4 2 1 33 33 H 1.08997 * 113.61715 * 220.01794 * 5 4 2 34 34 H 1.09000 * 113.68709 * 89.13039 * 5 4 2 35 35 H 1.00899 * 111.00015 * 340.55209 * 8 6 5 36 36 H 1.09000 * 109.47128 * 60.00016 * 9 8 6 37 37 H 1.08999 * 109.47532 * 300.00491 * 9 8 6 38 38 H 1.08001 * 119.96129 * 0.02562 * 11 10 9 39 39 H 1.07999 * 120.03432 * 179.97438 * 12 11 10 40 40 H 0.97008 * 119.99684 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.02924 * 179.72630 * 23 13 12 42 42 H 1.08000 * 119.96205 * 180.27275 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1254 1.4093 0.0000 4 6 2.1459 -0.9290 -1.0595 5 6 2.0930 -2.0425 -0.0002 6 6 2.1461 -0.9292 1.0592 7 1 3.1591 -0.6509 1.3498 8 7 1.2681 -1.1712 2.2118 9 6 2.0438 -1.5977 3.3841 10 6 1.1115 -1.8366 4.5437 11 6 0.5613 -3.0902 4.7399 12 6 -0.2938 -3.3122 5.8014 13 6 -0.6007 -2.2751 6.6725 14 8 -1.4406 -2.4903 7.7171 15 6 -1.8519 -3.7580 7.9207 16 1 -1.5794 -4.5334 7.2199 17 6 -2.6249 -4.0666 9.0297 18 7 -2.9572 -3.1221 9.8831 19 14 -3.1942 -5.8230 9.3120 20 1 -4.0005 -5.8879 10.5575 21 1 -4.0237 -6.2654 8.1624 22 1 -2.0118 -6.7122 9.4404 23 6 -0.0506 -1.0160 6.4698 24 6 0.8083 -0.8019 5.4099 25 1 -0.3633 0.3302 0.9732 26 1 -0.3634 0.6776 -0.7725 27 1 -0.3633 -1.0080 -0.2005 28 1 3.1953 1.3517 -0.2006 29 1 1.6427 2.0078 -0.7725 30 1 1.9627 1.8726 0.9731 31 1 3.1590 -0.6497 -1.3491 32 1 1.4955 -1.1092 -1.9154 33 1 2.9717 -2.6875 -0.0003 34 1 1.1575 -2.6019 0.0008 35 1 0.5531 -1.8464 1.9862 36 1 2.7606 -0.8201 3.6480 37 1 2.5771 -2.5194 3.1513 38 1 0.8008 -3.8964 4.0623 39 1 -0.7234 -4.2912 5.9538 40 1 -3.4977 -3.3379 10.6592 41 1 -0.2909 -0.2065 7.1431 42 1 1.2398 0.1758 5.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284216326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = 6.651290 kcal Electronic energy + Delta-G solvation = -20609.499751 eV Core-core repulsion = 17555.314404 eV Total energy + Delta-G solvation = -3054.185347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04555 -38.97586 -36.79468 -34.13367 -32.24070 -30.67004 -30.13881 -29.25540 -27.48260 -25.73960 -24.71772 -23.04744 -22.52972 -21.90514 -20.41245 -18.44720 -17.93841 -16.94159 -15.71331 -15.54206 -14.92095 -14.60891 -14.46686 -14.18643 -14.02609 -13.58863 -13.46399 -13.34064 -13.05758 -12.66716 -12.31165 -12.28922 -12.12267 -12.04260 -11.75191 -11.60518 -11.42733 -11.22634 -10.90733 -10.73070 -10.65810 -10.64555 -10.42199 -10.26271 -10.01082 -9.31939 -8.81922 -8.21315 -8.12634 -7.15462 -6.43823 -4.02716 2.25445 2.31894 3.13463 3.14405 3.17334 3.97593 4.22253 4.39297 4.51551 4.62810 4.66620 4.88188 5.11370 5.16293 5.31137 5.36747 5.38190 5.43185 5.50907 5.52911 5.63153 5.66412 5.74600 5.78065 5.82448 5.85648 5.91619 5.95348 6.00490 6.14600 6.24232 6.30153 6.43425 6.46630 6.73959 6.93333 7.05743 7.19214 7.30460 7.39392 7.46044 7.55458 7.86126 8.01244 9.01741 9.72606 10.74252 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.003121 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.198917 B = 8969.629906 C = 9238.101061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.134 4.134 5 C -0.172 4.172 6 C 0.075 3.925 7 H 0.093 0.907 8 N -0.671 5.671 9 C 0.118 3.882 10 C -0.184 4.184 11 C -0.066 4.066 12 C -0.235 4.235 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.278 1.278 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.195 4.195 24 C -0.052 4.052 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.343 0.657 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.511 3.309 -18.141 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.172 4.172 5 C -0.211 4.211 6 C -0.036 4.036 7 H 0.111 0.889 8 N -0.300 5.300 9 C -0.010 4.010 10 C -0.185 4.185 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.203 1.203 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.214 4.214 24 C -0.071 4.071 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.251 4.138 -17.522 20.241 hybrid contribution -0.052 -1.923 -0.157 1.930 sum 9.198 2.215 -17.679 20.051 Atomic orbital electron populations 1.21457 0.92846 1.01146 1.02502 1.21976 0.96209 0.94323 0.95153 1.21698 0.99742 0.95724 1.01901 1.22934 1.00836 0.96774 0.96698 1.23629 1.01960 0.97233 0.98290 1.23131 0.96421 0.95221 0.88796 0.88879 1.60464 1.14314 1.51376 1.03894 1.20638 0.93947 0.97927 0.88503 1.19138 1.05673 0.94314 0.99399 1.20584 0.95936 0.95578 0.96413 1.21110 1.05379 1.00301 0.98620 1.19403 0.88896 0.93331 0.88183 1.83978 1.52855 1.30346 1.40983 1.21273 1.32873 0.83106 1.09620 0.89173 1.25282 0.96609 0.99874 0.94735 1.70033 1.34924 1.32674 1.12191 0.85790 0.78954 0.80480 0.78257 1.20272 1.19518 1.19526 1.20227 1.03511 0.95854 1.01802 1.20460 0.96055 0.97360 0.93208 0.90812 0.93288 0.93102 0.93092 0.92986 0.92138 0.90427 0.91544 0.91894 0.90067 0.83764 0.91307 0.95580 0.88008 0.85708 0.91981 0.86607 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.37 37.16 0.31 -0.90 16 2 C -0.08 -0.71 1.37 -153.70 -0.21 -0.92 16 3 C -0.13 -1.18 9.19 37.15 0.34 -0.84 16 4 C -0.13 -1.13 7.19 -25.92 -0.19 -1.31 16 5 C -0.17 -1.56 7.36 -25.92 -0.19 -1.75 16 6 C 0.08 0.77 3.60 -66.90 -0.24 0.53 16 7 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 8 N -0.67 -8.25 5.57 -107.14 -0.60 -8.85 16 9 C 0.12 1.59 5.67 -4.98 -0.03 1.56 16 10 C -0.18 -3.12 5.40 -104.58 -0.56 -3.68 16 11 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 12 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 13 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 15 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 16 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 19 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 24 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 25 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.49 7.34 -51.92 -0.38 0.11 16 28 H 0.05 0.41 7.94 -51.92 -0.41 -0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.59 7.96 -51.92 -0.41 0.18 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.76 7.34 -51.93 -0.38 0.38 16 35 H 0.34 4.31 8.04 -39.29 -0.32 4.00 16 36 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -29.57 342.60 -8.69 -38.26 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.64 Total: 6.25 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -2.35 Total: -26.53 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.16 Total: -33.57 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.57 -8.69 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284216326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.916 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds