Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 112.90391 * 2 1 4 4 C 1.53783 * 113.61080 * 228.75296 * 2 1 3 5 5 C 1.53779 * 87.08193 * 270.87892 * 4 2 1 6 6 C 1.53779 * 87.08215 * 334.56999 * 5 4 2 7 7 H 1.09000 * 113.61482 * 270.80133 * 6 5 4 8 8 N 1.46898 * 113.61578 * 139.97788 * 6 5 4 9 9 C 1.46896 * 111.00044 * 104.50426 * 8 6 5 10 10 C 1.50703 * 109.47616 * 180.02562 * 9 8 6 11 11 C 1.38301 * 119.93131 * 89.99737 * 10 9 8 12 12 C 1.38098 * 120.06892 * 180.02562 * 11 10 9 13 13 C 1.38875 * 119.93063 * 359.97438 * 12 11 10 14 14 O 1.35755 * 120.06689 * 180.02562 * 13 12 11 15 15 C 1.34822 * 117.00073 * 5.53321 * 14 13 12 16 16 H 1.08004 * 120.00474 * 354.94658 * 15 14 13 17 17 C 1.38660 * 120.00298 * 174.94008 * 15 14 13 18 18 N 1.31556 * 119.99320 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46999 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47222 * 299.99956 * 19 17 15 22 22 H 1.48497 * 109.47585 * 60.00135 * 19 17 15 23 23 C 1.38883 * 119.86225 * 0.27186 * 13 12 11 24 24 C 1.38101 * 119.92844 * 359.45102 * 23 13 12 25 25 H 1.08999 * 109.46709 * 288.74078 * 1 2 3 26 26 H 1.08995 * 109.47501 * 48.74350 * 1 2 3 27 27 H 1.09009 * 109.46870 * 168.74923 * 1 2 3 28 28 H 1.09007 * 109.46940 * 191.25424 * 3 2 1 29 29 H 1.08998 * 109.47519 * 311.25458 * 3 2 1 30 30 H 1.09000 * 109.47371 * 71.25662 * 3 2 1 31 31 H 1.09007 * 113.61130 * 156.33198 * 4 2 1 32 32 H 1.09002 * 113.69095 * 25.44376 * 4 2 1 33 33 H 1.08997 * 113.61715 * 220.01794 * 5 4 2 34 34 H 1.09000 * 113.68709 * 89.13039 * 5 4 2 35 35 H 1.00899 * 111.00015 * 340.55209 * 8 6 5 36 36 H 1.09000 * 109.47128 * 60.00016 * 9 8 6 37 37 H 1.08999 * 109.47532 * 300.00491 * 9 8 6 38 38 H 1.08001 * 119.96129 * 0.02562 * 11 10 9 39 39 H 1.07999 * 120.03432 * 179.97438 * 12 11 10 40 40 H 0.97008 * 119.99684 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.02924 * 179.72630 * 23 13 12 42 42 H 1.08000 * 119.96205 * 180.27275 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1254 1.4093 0.0000 4 6 2.1459 -0.9290 -1.0595 5 6 2.0930 -2.0425 -0.0002 6 6 2.1461 -0.9292 1.0592 7 1 3.1591 -0.6509 1.3498 8 7 1.2681 -1.1712 2.2118 9 6 2.0438 -1.5977 3.3841 10 6 1.1115 -1.8366 4.5437 11 6 0.5613 -3.0902 4.7399 12 6 -0.2938 -3.3122 5.8014 13 6 -0.6007 -2.2751 6.6725 14 8 -1.4406 -2.4903 7.7171 15 6 -1.8519 -3.7580 7.9207 16 1 -1.5794 -4.5334 7.2199 17 6 -2.6249 -4.0666 9.0297 18 7 -2.9572 -3.1221 9.8831 19 14 -3.1942 -5.8230 9.3120 20 1 -4.0005 -5.8879 10.5575 21 1 -4.0237 -6.2654 8.1624 22 1 -2.0118 -6.7122 9.4404 23 6 -0.0506 -1.0160 6.4698 24 6 0.8083 -0.8019 5.4099 25 1 -0.3633 0.3302 0.9732 26 1 -0.3634 0.6776 -0.7725 27 1 -0.3633 -1.0080 -0.2005 28 1 3.1953 1.3517 -0.2006 29 1 1.6427 2.0078 -0.7725 30 1 1.9627 1.8726 0.9731 31 1 3.1590 -0.6497 -1.3491 32 1 1.4955 -1.1092 -1.9154 33 1 2.9717 -2.6875 -0.0003 34 1 1.1575 -2.6019 0.0008 35 1 0.5531 -1.8464 1.9862 36 1 2.7606 -0.8201 3.6480 37 1 2.5771 -2.5194 3.1513 38 1 0.8008 -3.8964 4.0623 39 1 -0.7234 -4.2912 5.9538 40 1 -3.4977 -3.3379 10.6592 41 1 -0.2909 -0.2065 7.1431 42 1 1.2398 0.1758 5.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284216326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = -10.307611 kcal Electronic energy + Delta-G solvation = -20610.235144 eV Core-core repulsion = 17555.314404 eV Total energy + Delta-G solvation = -3054.920740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94338 -40.58842 -38.47144 -35.33265 -34.20156 -31.77610 -31.49456 -30.61121 -28.23536 -27.55677 -26.04370 -24.01535 -23.60250 -23.23434 -21.95064 -19.85310 -19.26072 -18.75255 -16.73334 -16.47643 -16.41434 -16.25754 -15.65517 -15.51524 -15.32716 -15.17947 -14.89450 -14.36887 -14.19890 -13.98981 -13.73074 -13.54523 -13.13202 -13.04060 -12.97402 -12.80020 -12.53583 -12.33525 -12.29629 -12.20502 -12.15956 -12.06626 -11.45098 -11.17165 -10.98894 -10.88326 -10.75543 -9.76131 -9.15792 -8.86462 -8.46737 -6.15047 0.62017 0.69892 1.34717 1.45612 1.51218 2.18210 2.80077 3.12739 3.48286 3.54995 3.67094 3.79914 3.92042 4.02218 4.08586 4.14491 4.25173 4.43493 4.54215 4.63378 4.66847 4.70471 4.78107 4.83405 4.84695 4.93868 4.97413 5.08519 5.10251 5.11196 5.15883 5.21594 5.29838 5.33222 5.38269 5.58246 5.59334 5.67030 5.72648 5.84359 6.03452 6.21294 6.31690 6.55111 6.97844 7.79557 8.76543 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.003121 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.198917 B = 8969.629906 C = 9238.101061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.127 4.127 5 C -0.168 4.168 6 C 0.072 3.928 7 H 0.099 0.901 8 N -0.678 5.678 9 C 0.123 3.877 10 C -0.156 4.156 11 C -0.063 4.063 12 C -0.243 4.243 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.415 4.415 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.272 1.272 21 H -0.257 1.257 22 H -0.257 1.257 23 C -0.207 4.207 24 C -0.048 4.048 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.342 0.658 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.110 0.890 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 2.504 -21.140 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.189 4.189 4 C -0.165 4.165 5 C -0.207 4.207 6 C -0.038 4.038 7 H 0.117 0.883 8 N -0.308 5.308 9 C -0.005 4.005 10 C -0.157 4.157 11 C -0.081 4.081 12 C -0.262 4.262 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.491 4.491 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.196 1.196 21 H -0.181 1.181 22 H -0.181 1.181 23 C -0.226 4.226 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.287 3.352 -20.582 23.712 hybrid contribution -0.452 -1.497 0.487 1.637 sum 10.835 1.855 -20.095 22.905 Atomic orbital electron populations 1.21421 0.93500 1.01249 1.01591 1.22002 0.95724 0.94786 0.95459 1.21687 1.00480 0.95342 1.01405 1.22909 1.01432 0.95753 0.96359 1.23584 1.02111 0.97149 0.97876 1.23226 0.96276 0.96110 0.88177 0.88302 1.60417 1.14693 1.51296 1.04412 1.20622 0.93145 0.99341 0.87410 1.19653 1.03653 0.93134 0.99289 1.20940 0.94449 0.97254 0.95470 1.21223 1.06218 0.99398 0.99384 1.19940 0.90018 0.95274 0.88452 1.83941 1.55679 1.30881 1.43562 1.21790 1.33342 0.83586 1.10385 0.88133 1.26604 0.96439 1.04973 0.94063 1.70186 1.36994 1.35485 1.13360 0.84650 0.78842 0.74183 0.78551 1.19616 1.18116 1.18138 1.20466 1.04273 0.94880 1.03001 1.20830 0.94684 0.99231 0.91882 0.92748 0.92608 0.93068 0.92016 0.92502 0.93342 0.89292 0.91155 0.91233 0.90392 0.83938 0.90024 0.93947 0.84501 0.86462 0.91840 0.87179 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.37 71.98 0.60 -1.55 16 2 C -0.08 -1.26 1.37 -51.66 -0.07 -1.33 16 3 C -0.13 -1.98 9.19 71.98 0.66 -1.32 16 4 C -0.13 -1.68 7.19 31.12 0.22 -1.46 16 5 C -0.17 -2.47 7.36 31.12 0.23 -2.24 16 6 C 0.07 1.22 3.60 45.44 0.16 1.39 16 7 H 0.10 1.60 7.85 -2.39 -0.02 1.58 16 8 N -0.68 -14.41 5.57 -492.87 -2.74 -17.16 16 9 C 0.12 2.79 5.67 85.56 0.49 3.28 16 10 C -0.16 -4.83 5.40 -19.83 -0.11 -4.94 16 11 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 12 C -0.24 -10.67 9.17 22.39 0.21 -10.46 16 13 C 0.11 5.76 6.65 22.58 0.15 5.91 16 14 O -0.23 -14.37 9.76 -22.72 -0.22 -14.59 16 15 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 17 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 18 N -0.92 -57.37 13.67 21.61 0.30 -57.08 16 19 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 23 C -0.21 -9.06 9.99 22.39 0.22 -8.84 16 24 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 25 H 0.05 1.18 7.77 -2.39 -0.02 1.16 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.89 7.34 -2.38 -0.02 0.88 16 28 H 0.06 0.79 7.94 -2.38 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.01 7.96 -2.38 -0.02 0.99 16 32 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.21 7.34 -2.39 -0.02 1.20 16 35 H 0.34 7.52 8.04 -89.69 -0.72 6.80 16 36 H 0.08 1.72 8.07 -2.39 -0.02 1.70 16 37 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -68.48 342.60 3.95 -64.53 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.28 Total: 28.76 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 4.31 Total: -49.69 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.45 Total: -74.23 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.48 3.95 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284216326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.224 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds