Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00237 * 2 1 4 4 H 1.07994 * 119.99715 * 168.44783 * 3 2 1 5 5 C 1.38812 * 119.99702 * 348.44956 * 3 2 1 6 6 N 1.31618 * 120.00197 * 331.83485 * 5 3 2 7 7 Si 1.86805 * 119.99667 * 151.83379 * 5 3 2 8 8 H 1.48503 * 109.46806 * 94.99666 * 7 5 3 9 9 H 1.48500 * 109.46969 * 214.99323 * 7 5 3 10 10 H 1.48495 * 109.47310 * 334.99435 * 7 5 3 11 11 C 1.46499 * 119.99977 * 180.02562 * 2 1 3 12 12 H 1.08998 * 112.85227 * 197.41925 * 11 2 1 13 13 C 1.53791 * 113.69115 * 328.68609 * 11 2 1 14 14 C 1.53960 * 87.10962 * 89.19776 * 13 11 2 15 15 H 1.08997 * 113.61173 * 270.84853 * 14 13 11 16 16 O 1.42903 * 113.66281 * 139.88993 * 14 13 11 17 17 C 1.35904 * 116.99646 * 105.01936 * 16 14 13 18 18 C 1.38734 * 120.05180 * 176.84682 * 17 16 14 19 19 C 1.38145 * 119.93852 * 179.69892 * 18 17 16 20 20 C 1.38267 * 120.05835 * 0.59356 * 19 18 17 21 21 C 1.38267 * 120.10971 * 359.67884 * 20 19 18 22 22 C 1.38151 * 120.05857 * 0.02562 * 21 20 19 23 23 C 1.53777 * 113.61886 * 66.21867 * 11 2 1 24 24 C 1.53003 * 113.61063 * 25.35509 * 23 11 2 25 25 C 1.52998 * 113.61589 * 156.16447 * 23 11 2 26 26 H 1.08991 * 109.47037 * 206.69562 * 1 2 3 27 27 H 1.09005 * 109.46886 * 326.69293 * 1 2 3 28 28 H 1.09003 * 109.47112 * 86.69185 * 1 2 3 29 29 H 0.96997 * 119.99739 * 179.97438 * 6 5 3 30 30 H 1.08992 * 113.61356 * 203.67623 * 13 11 2 31 31 H 1.08998 * 113.60743 * 334.49848 * 13 11 2 32 32 H 1.07991 * 120.02666 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.97155 * 180.27226 * 19 18 17 34 34 H 1.07996 * 119.94581 * 179.69953 * 20 19 18 35 35 H 1.08005 * 119.97236 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.03046 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47372 * 188.52766 * 24 23 11 38 38 H 1.08994 * 109.47822 * 68.52318 * 24 23 11 39 39 H 1.09007 * 109.47023 * 308.52256 * 24 23 11 40 40 H 1.08997 * 109.47549 * 298.47513 * 25 23 11 41 41 H 1.09003 * 109.47225 * 58.48062 * 25 23 11 42 42 H 1.09006 * 109.47114 * 178.47439 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2133 1.1953 0.1873 5 6 1.4768 2.3759 -0.2407 6 7 0.3896 2.3787 -0.9826 7 14 2.1142 3.9733 0.4883 8 1 2.9685 4.6665 -0.5092 9 1 0.9675 4.8451 0.8490 10 1 2.9134 3.6782 1.7046 11 6 2.1975 -1.2687 -0.0006 12 1 3.2391 -1.1563 0.3002 13 6 1.4645 -2.4058 0.7309 14 6 0.7932 -2.7339 -0.6153 15 1 -0.1375 -2.1919 -0.7826 16 8 0.6748 -4.1350 -0.8706 17 6 -0.5603 -4.6850 -0.7326 18 6 -0.7608 -6.0256 -1.0281 19 6 -2.0158 -6.5838 -0.8810 20 6 -3.0743 -5.8047 -0.4514 21 6 -2.8782 -4.4670 -0.1617 22 6 -1.6237 -3.9054 -0.3013 23 6 2.0135 -2.0858 -1.2902 24 6 1.6583 -1.2335 -2.5102 25 6 3.1560 -3.0662 -1.5629 26 1 -0.3633 -0.9181 0.4616 27 1 -0.3633 0.8589 0.5643 28 1 -0.3633 0.0593 -1.0260 29 1 -0.0808 3.2102 -1.1504 30 1 2.1276 -3.1928 1.0899 31 1 0.7693 -2.0568 1.4944 32 1 0.0645 -6.6332 -1.3685 33 1 -2.1716 -7.6284 -1.1067 34 1 -4.0557 -6.2418 -0.3417 35 1 -3.7066 -3.8604 0.1733 36 1 -1.4711 -2.8605 -0.0753 37 1 1.3962 -1.8843 -3.3444 38 1 2.5146 -0.6176 -2.7851 39 1 0.8109 -0.5912 -2.2705 40 1 4.0878 -2.5139 -1.6841 41 1 3.2495 -3.7572 -0.7251 42 1 2.9445 -3.6263 -2.4738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287481864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 42.358575 kcal Electronic energy + Delta-G solvation = -22148.435215 eV Core-core repulsion = 19095.798252 eV Total energy + Delta-G solvation = -3052.636963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50389 -38.89119 -36.52465 -34.10954 -30.99473 -30.87122 -29.82153 -29.29470 -27.02524 -26.13762 -24.83089 -22.93104 -22.41830 -21.54425 -20.64069 -18.15493 -17.65765 -16.86384 -15.88901 -15.59590 -15.06338 -14.75915 -14.49673 -14.01607 -13.86164 -13.52497 -13.31544 -13.09322 -12.76685 -12.41618 -12.14176 -11.74248 -11.69731 -11.54999 -11.44807 -11.38389 -11.05985 -10.80677 -10.62887 -10.55475 -10.35456 -10.27065 -9.97237 -9.72601 -9.52558 -9.48593 -8.92134 -8.45126 -7.96479 -6.93614 -5.85672 -3.12392 1.42409 1.57071 3.36495 3.45564 3.48716 3.57302 3.89520 4.45464 4.90186 4.95396 5.03825 5.06918 5.12580 5.23625 5.26869 5.43934 5.49413 5.56178 5.66475 5.75509 5.88187 6.00451 6.07247 6.14798 6.21013 6.26407 6.35698 6.46462 6.47656 6.54080 6.55410 6.59990 6.61614 6.69347 6.80790 6.89937 7.04317 7.18739 7.25902 7.56628 7.77177 7.80140 8.26320 9.13463 9.80912 10.26172 11.22432 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.004917 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.409157 B = 5693.556691 C = 6303.865924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.573 5.573 3 C -0.258 4.258 4 H 0.074 0.926 5 C 0.006 3.994 6 N -0.895 5.895 7 Si 0.891 3.109 8 H -0.289 1.289 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.179 3.821 12 H 0.078 0.922 13 C -0.173 4.173 14 C 0.058 3.942 15 H 0.106 0.894 16 O -0.302 6.302 17 C 0.142 3.858 18 C -0.163 4.163 19 C -0.085 4.085 20 C -0.171 4.171 21 C -0.079 4.079 22 C -0.210 4.210 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.006 0.994 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.030 0.970 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -14.524 0.521 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.293 5.293 3 C -0.387 4.387 4 H 0.092 0.908 5 C -0.193 4.193 6 N -0.539 5.539 7 Si 0.721 3.279 8 H -0.217 1.217 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.068 3.932 12 H 0.096 0.904 13 C -0.213 4.213 14 C 0.003 3.997 15 H 0.123 0.877 16 O -0.215 6.215 17 C 0.095 3.905 18 C -0.182 4.182 19 C -0.103 4.103 20 C -0.189 4.189 21 C -0.097 4.097 22 C -0.229 4.229 23 C -0.110 4.110 24 C -0.180 4.180 25 C -0.172 4.172 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.057 -14.405 0.434 14.732 hybrid contribution 0.006 1.086 0.291 1.124 sum -3.051 -13.320 0.724 13.684 Atomic orbital electron populations 1.21046 0.82940 0.96514 0.99139 1.43780 1.01494 0.99986 1.83992 1.19154 0.93393 0.83163 1.42983 0.90785 1.24689 0.98026 0.97586 0.98994 1.70212 1.21181 1.26330 1.36138 0.86453 0.77847 0.83964 0.79684 1.21660 1.21620 1.20520 1.21127 0.95508 0.84817 0.91739 0.90404 1.24023 1.00751 0.99875 0.96623 1.24774 0.99806 0.77486 0.97672 0.87704 1.86155 1.25983 1.25935 1.83432 1.19161 0.84918 0.92721 0.93666 1.20427 0.98170 0.92965 1.06655 1.20895 0.92085 0.99410 0.97878 1.20978 0.98989 0.94430 1.04525 1.20963 0.96357 0.95036 0.97332 1.21440 0.93549 1.00992 1.06920 1.23051 0.93253 0.95835 0.98862 1.21574 1.03288 0.98340 0.94765 1.21362 0.96866 0.97843 1.01086 0.97527 0.93100 0.95441 0.93712 0.89723 0.91015 0.85620 0.85894 0.86375 0.86035 0.85066 0.95059 0.92639 0.90322 0.92832 0.92800 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.40 6.91 59.85 0.41 3.82 16 2 N -0.57 -13.47 2.26 -172.55 -0.39 -13.86 16 3 C -0.26 -6.79 9.68 -15.06 -0.15 -6.93 16 4 H 0.07 1.92 7.94 -52.49 -0.42 1.50 16 5 C 0.01 0.16 4.77 -17.43 -0.08 0.07 16 6 N -0.89 -24.99 11.06 55.49 0.61 -24.38 16 7 Si 0.89 21.21 29.64 -169.99 -5.04 16.18 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 C 0.18 3.54 4.03 -67.12 -0.27 3.27 16 12 H 0.08 1.53 8.01 -51.93 -0.42 1.12 16 13 C -0.17 -3.00 6.76 -25.82 -0.17 -3.17 16 14 C 0.06 1.01 2.50 -25.83 -0.06 0.94 16 15 H 0.11 1.93 3.55 -51.93 -0.18 1.75 16 16 O -0.30 -5.07 9.27 -19.44 -0.18 -5.25 16 17 C 0.14 2.20 6.68 -39.22 -0.26 1.94 16 18 C -0.16 -2.19 9.99 -39.43 -0.39 -2.59 16 19 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 20 C -0.17 -1.97 10.04 -39.56 -0.40 -2.37 16 21 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 22 C -0.21 -3.15 9.04 -39.43 -0.36 -3.51 16 23 C -0.11 -1.93 1.31 -153.70 -0.20 -2.13 16 24 C -0.12 -2.43 8.71 37.16 0.32 -2.11 16 25 C -0.11 -1.79 8.43 37.16 0.31 -1.47 16 26 H 0.01 0.13 4.56 -51.93 -0.24 -0.11 16 27 H 0.05 1.29 6.86 -51.93 -0.36 0.93 16 28 H 0.03 0.68 6.08 -51.93 -0.32 0.36 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.08 1.34 7.64 -51.93 -0.40 0.94 16 31 H 0.07 1.27 7.03 -51.93 -0.36 0.91 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 36 H 0.13 2.04 5.59 -52.49 -0.29 1.74 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.79 5.30 -51.92 -0.28 1.51 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.80 7.22 -51.93 -0.38 0.42 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -27.93 325.37 -8.33 -36.26 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.15 Total: 3.17 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.09 Total: -17.02 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.22 Total: -38.24 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.93 -8.33 -36.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.622 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds