Wall clock time and date at job start Mon Mar 30 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00237 * 2 1 4 4 H 1.07994 * 119.99715 * 168.44783 * 3 2 1 5 5 C 1.38812 * 119.99702 * 348.44956 * 3 2 1 6 6 N 1.31618 * 120.00197 * 331.83485 * 5 3 2 7 7 Si 1.86805 * 119.99667 * 151.83379 * 5 3 2 8 8 H 1.48503 * 109.46806 * 94.99666 * 7 5 3 9 9 H 1.48500 * 109.46969 * 214.99323 * 7 5 3 10 10 H 1.48495 * 109.47310 * 334.99435 * 7 5 3 11 11 C 1.46499 * 119.99977 * 180.02562 * 2 1 3 12 12 H 1.08998 * 112.85227 * 197.41925 * 11 2 1 13 13 C 1.53791 * 113.69115 * 328.68609 * 11 2 1 14 14 C 1.53960 * 87.10962 * 89.19776 * 13 11 2 15 15 H 1.08997 * 113.61173 * 270.84853 * 14 13 11 16 16 O 1.42903 * 113.66281 * 139.88993 * 14 13 11 17 17 C 1.35904 * 116.99646 * 105.01936 * 16 14 13 18 18 C 1.38734 * 120.05180 * 176.84682 * 17 16 14 19 19 C 1.38145 * 119.93852 * 179.69892 * 18 17 16 20 20 C 1.38267 * 120.05835 * 0.59356 * 19 18 17 21 21 C 1.38267 * 120.10971 * 359.67884 * 20 19 18 22 22 C 1.38151 * 120.05857 * 0.02562 * 21 20 19 23 23 C 1.53777 * 113.61886 * 66.21867 * 11 2 1 24 24 C 1.53003 * 113.61063 * 25.35509 * 23 11 2 25 25 C 1.52998 * 113.61589 * 156.16447 * 23 11 2 26 26 H 1.08991 * 109.47037 * 206.69562 * 1 2 3 27 27 H 1.09005 * 109.46886 * 326.69293 * 1 2 3 28 28 H 1.09003 * 109.47112 * 86.69185 * 1 2 3 29 29 H 0.96997 * 119.99739 * 179.97438 * 6 5 3 30 30 H 1.08992 * 113.61356 * 203.67623 * 13 11 2 31 31 H 1.08998 * 113.60743 * 334.49848 * 13 11 2 32 32 H 1.07991 * 120.02666 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.97155 * 180.27226 * 19 18 17 34 34 H 1.07996 * 119.94581 * 179.69953 * 20 19 18 35 35 H 1.08005 * 119.97236 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.03046 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47372 * 188.52766 * 24 23 11 38 38 H 1.08994 * 109.47822 * 68.52318 * 24 23 11 39 39 H 1.09007 * 109.47023 * 308.52256 * 24 23 11 40 40 H 1.08997 * 109.47549 * 298.47513 * 25 23 11 41 41 H 1.09003 * 109.47225 * 58.48062 * 25 23 11 42 42 H 1.09006 * 109.47114 * 178.47439 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2133 1.1953 0.1873 5 6 1.4768 2.3759 -0.2407 6 7 0.3896 2.3787 -0.9826 7 14 2.1142 3.9733 0.4883 8 1 2.9685 4.6665 -0.5092 9 1 0.9675 4.8451 0.8490 10 1 2.9134 3.6782 1.7046 11 6 2.1975 -1.2687 -0.0006 12 1 3.2391 -1.1563 0.3002 13 6 1.4645 -2.4058 0.7309 14 6 0.7932 -2.7339 -0.6153 15 1 -0.1375 -2.1919 -0.7826 16 8 0.6748 -4.1350 -0.8706 17 6 -0.5603 -4.6850 -0.7326 18 6 -0.7608 -6.0256 -1.0281 19 6 -2.0158 -6.5838 -0.8810 20 6 -3.0743 -5.8047 -0.4514 21 6 -2.8782 -4.4670 -0.1617 22 6 -1.6237 -3.9054 -0.3013 23 6 2.0135 -2.0858 -1.2902 24 6 1.6583 -1.2335 -2.5102 25 6 3.1560 -3.0662 -1.5629 26 1 -0.3633 -0.9181 0.4616 27 1 -0.3633 0.8589 0.5643 28 1 -0.3633 0.0593 -1.0260 29 1 -0.0808 3.2102 -1.1504 30 1 2.1276 -3.1928 1.0899 31 1 0.7693 -2.0568 1.4944 32 1 0.0645 -6.6332 -1.3685 33 1 -2.1716 -7.6284 -1.1067 34 1 -4.0557 -6.2418 -0.3417 35 1 -3.7066 -3.8604 0.1733 36 1 -1.4711 -2.8605 -0.0753 37 1 1.3962 -1.8843 -3.3444 38 1 2.5146 -0.6176 -2.7851 39 1 0.8109 -0.5912 -2.2705 40 1 4.0878 -2.5139 -1.6841 41 1 3.2495 -3.7572 -0.7251 42 1 2.9445 -3.6263 -2.4738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287481864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:24 Heat of formation + Delta-G solvation = 29.277805 kcal Electronic energy + Delta-G solvation = -22149.002440 eV Core-core repulsion = 19095.798252 eV Total energy + Delta-G solvation = -3053.204188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86159 -40.09810 -37.76761 -35.91316 -32.76641 -31.95945 -31.21017 -30.52828 -28.68264 -27.75995 -26.50878 -24.41737 -23.47099 -22.84924 -22.16659 -19.43100 -19.08346 -18.76382 -17.18229 -16.74798 -16.55939 -16.25666 -15.87138 -15.42748 -15.32827 -15.04102 -14.75042 -14.31289 -14.22058 -13.87616 -13.55687 -13.33747 -13.14318 -12.96471 -12.83108 -12.76288 -12.58857 -12.40269 -12.39637 -12.11297 -11.98358 -11.80261 -11.68311 -11.44662 -11.04539 -10.92761 -10.44488 -9.91257 -9.06256 -8.87056 -7.89235 -5.17013 0.43254 0.55246 1.45595 1.50068 1.59016 2.34555 2.51646 2.89130 3.22914 3.47958 3.53552 3.66803 3.91403 3.99307 4.03033 4.10556 4.30421 4.41457 4.45726 4.54273 4.60967 4.64851 4.73148 4.80517 4.84533 4.89266 4.96108 5.03251 5.09998 5.13064 5.20713 5.26372 5.29540 5.42519 5.49627 5.52843 5.60283 5.63891 5.66064 5.76856 5.95895 6.27357 6.57160 7.12292 7.87316 8.28863 9.17417 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.004917 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.409157 B = 5693.556691 C = 6303.865924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.075 0.925 5 C -0.044 4.044 6 N -0.925 5.925 7 Si 0.952 3.048 8 H -0.290 1.290 9 H -0.296 1.296 10 H -0.273 1.273 11 C 0.163 3.837 12 H 0.080 0.920 13 C -0.158 4.158 14 C 0.068 3.932 15 H 0.090 0.910 16 O -0.307 6.307 17 C 0.111 3.889 18 C -0.170 4.170 19 C -0.080 4.080 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.230 4.230 23 C -0.102 4.102 24 C -0.114 4.114 25 C -0.107 4.107 26 H 0.033 0.967 27 H 0.021 0.979 28 H 0.005 0.995 29 H 0.248 0.752 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 -17.075 0.997 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.093 0.907 5 C -0.240 4.240 6 N -0.571 5.571 7 Si 0.780 3.220 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.054 3.946 12 H 0.098 0.902 13 C -0.197 4.197 14 C 0.013 3.987 15 H 0.107 0.893 16 O -0.221 6.221 17 C 0.066 3.934 18 C -0.188 4.188 19 C -0.098 4.098 20 C -0.183 4.183 21 C -0.106 4.106 22 C -0.249 4.249 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.164 4.164 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.060 -16.993 0.920 17.291 hybrid contribution -0.047 1.738 0.117 1.743 sum -3.107 -15.255 1.037 15.602 Atomic orbital electron populations 1.20746 0.83065 0.96397 0.97472 1.43882 1.01607 1.00754 1.84197 1.19450 0.93639 0.84400 1.41675 0.90717 1.25341 0.98728 1.00228 0.99698 1.70339 1.22602 1.26497 1.37650 0.85506 0.76966 0.80557 0.78937 1.21701 1.22210 1.19762 1.21342 0.95549 0.84173 0.93546 0.90181 1.23907 1.00462 0.99020 0.96280 1.24420 0.98739 0.78293 0.97282 0.89287 1.86099 1.27029 1.24867 1.84099 1.19462 0.84508 0.93817 0.95655 1.20723 0.99590 0.92139 1.06356 1.21339 0.91067 1.01049 0.96308 1.21400 1.00502 0.93707 1.02686 1.21253 0.95957 0.96186 0.97227 1.21458 0.94725 1.00443 1.08246 1.22971 0.94780 0.95845 0.96959 1.21441 1.01225 0.98169 0.96286 1.21318 0.95815 0.97360 1.01929 0.94833 0.96060 0.97724 0.94321 0.87538 0.91581 0.84403 0.82419 0.83275 0.84457 0.86710 0.93547 0.94094 0.93635 0.92177 0.91566 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.03 6.91 127.77 0.88 8.91 16 2 N -0.58 -28.05 2.26 -699.83 -1.58 -29.63 16 3 C -0.26 -14.00 9.68 84.03 0.81 -13.19 16 4 H 0.08 3.90 7.94 -2.91 -0.02 3.88 16 5 C -0.04 -2.42 4.77 84.86 0.41 -2.02 16 6 N -0.92 -53.57 11.06 21.65 0.24 -53.33 16 7 Si 0.95 44.49 29.64 68.60 2.03 46.53 16 8 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.16 6.40 4.03 45.52 0.18 6.59 16 12 H 0.08 3.09 8.01 -2.39 -0.02 3.07 16 13 C -0.16 -5.30 6.76 31.18 0.21 -5.09 16 14 C 0.07 2.36 2.50 31.18 0.08 2.44 16 15 H 0.09 3.37 3.55 -2.39 -0.01 3.37 16 16 O -0.31 -9.98 9.27 -92.47 -0.86 -10.84 16 17 C 0.11 3.33 6.68 22.51 0.15 3.48 16 18 C -0.17 -4.14 9.99 22.37 0.22 -3.92 16 19 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 20 C -0.16 -3.25 10.04 22.28 0.22 -3.02 16 21 C -0.09 -2.11 10.04 22.26 0.22 -1.89 16 22 C -0.23 -6.80 9.04 22.37 0.20 -6.60 16 23 C -0.10 -3.65 1.31 -51.66 -0.07 -3.72 16 24 C -0.11 -4.61 8.71 71.98 0.63 -3.98 16 25 C -0.11 -3.14 8.43 71.98 0.61 -2.53 16 26 H 0.03 1.39 4.56 -2.39 -0.01 1.38 16 27 H 0.02 1.11 6.86 -2.38 -0.02 1.09 16 28 H 0.00 0.25 6.08 -2.39 -0.01 0.23 16 29 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.11 3.12 7.64 -2.39 -0.02 3.11 16 31 H 0.07 2.30 7.03 -2.39 -0.02 2.28 16 32 H 0.14 2.94 8.06 -2.92 -0.02 2.92 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.12 3.68 5.59 -2.91 -0.02 3.66 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 2.14 5.30 -2.38 -0.01 2.13 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.79 7.22 -2.39 -0.02 1.77 16 42 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -61.21 325.37 5.83 -55.38 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.00 Total: 17.76 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.99 Total: -25.87 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.34 Total: -82.96 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.86 Total: -10.84 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.53 kcal Total: -61.21 5.83 -55.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.659 kcal (2) G-P(sol) polarization free energy of solvation -61.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds