Wall clock time and date at job start Mon Mar 30 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36932 * 120.00320 * 2 1 4 4 H 1.08001 * 120.00014 * 197.19759 * 3 2 1 5 5 C 1.38812 * 119.99995 * 17.19175 * 3 2 1 6 6 N 1.31616 * 120.00058 * 210.35166 * 5 3 2 7 7 Si 1.86804 * 119.99882 * 30.35231 * 5 3 2 8 8 H 1.48500 * 109.46910 * 265.68500 * 7 5 3 9 9 H 1.48496 * 109.46851 * 145.68212 * 7 5 3 10 10 H 1.48505 * 109.47007 * 25.68516 * 7 5 3 11 11 C 1.46503 * 119.99691 * 179.97438 * 2 1 3 12 12 H 1.09001 * 112.84838 * 163.24825 * 11 2 1 13 13 C 1.53783 * 113.61711 * 32.04696 * 11 2 1 14 14 C 1.53959 * 87.01793 * 220.05168 * 13 11 2 15 15 H 1.09011 * 113.60773 * 270.79804 * 14 13 11 16 16 O 1.42894 * 113.66892 * 139.93629 * 14 13 11 17 17 C 1.35896 * 117.00601 * 104.60705 * 16 14 13 18 18 C 1.38731 * 120.05957 * 173.69669 * 17 16 14 19 19 C 1.38149 * 119.94286 * 179.70058 * 18 17 16 20 20 C 1.38262 * 120.05455 * 0.59364 * 19 18 17 21 21 C 1.38267 * 120.11506 * 359.67677 * 20 19 18 22 22 C 1.38143 * 120.05310 * 0.02592 * 21 20 19 23 23 C 1.53774 * 87.11433 * 25.36199 * 14 13 11 24 24 C 1.53007 * 113.61516 * 220.09417 * 23 14 13 25 25 C 1.53000 * 113.61693 * 89.19241 * 23 14 13 26 26 H 1.09004 * 109.47093 * 32.19796 * 1 2 3 27 27 H 1.08998 * 109.47538 * 152.19622 * 1 2 3 28 28 H 1.08999 * 109.47674 * 272.19748 * 1 2 3 29 29 H 0.96995 * 120.00157 * 5.10200 * 6 5 3 30 30 H 1.09003 * 113.60874 * 334.56165 * 13 11 2 31 31 H 1.08991 * 113.61728 * 105.47192 * 13 11 2 32 32 H 1.07997 * 120.02783 * 359.97438 * 18 17 16 33 33 H 1.07996 * 119.97035 * 180.31506 * 19 18 17 34 34 H 1.08006 * 119.94174 * 179.70048 * 20 19 18 35 35 H 1.08001 * 119.97257 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.02989 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47337 * 157.49564 * 24 23 14 38 38 H 1.09000 * 109.46767 * 277.49947 * 24 23 14 39 39 H 1.09002 * 109.46984 * 37.49517 * 24 23 14 40 40 H 1.09004 * 109.46561 * 317.92182 * 25 23 14 41 41 H 1.08996 * 109.46739 * 77.92308 * 25 23 14 42 42 H 1.09002 * 109.46866 * 197.92620 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1935 1.2067 -0.2765 5 6 1.5022 2.3612 0.3553 6 7 1.8806 3.5062 -0.1718 7 14 0.0937 2.3176 1.5817 8 1 -1.1960 2.2279 0.8511 9 1 0.1132 3.5553 2.4019 10 1 0.2446 1.1348 2.4669 11 6 2.1974 -1.2688 0.0006 12 1 3.2420 -1.1546 -0.2890 13 6 1.4711 -2.3998 -0.7466 14 6 1.9395 -3.3369 0.3816 15 1 2.9134 -3.7903 0.1964 16 8 0.9522 -4.2883 0.7841 17 6 1.1244 -5.5703 0.3673 18 6 0.2794 -6.5699 0.8270 19 6 0.4529 -7.8712 0.3970 20 6 1.4752 -8.1799 -0.4812 21 6 2.3222 -7.1864 -0.9365 22 6 2.1492 -5.8825 -0.5143 23 6 2.0005 -2.0932 1.2838 24 6 3.2123 -2.0722 2.2177 25 6 0.6857 -1.7959 2.0076 26 1 -0.3633 0.8697 -0.5476 27 1 -0.3634 -0.9090 -0.4793 28 1 -0.3634 0.0394 1.0269 29 1 2.5611 3.5207 -0.8628 30 1 0.3893 -2.2720 -0.7870 31 1 1.9075 -2.6321 -1.7179 32 1 -0.5161 -6.3302 1.5170 33 1 -0.2079 -8.6489 0.7506 34 1 1.6121 -9.1987 -0.8124 35 1 3.1198 -7.4300 -1.6228 36 1 2.8108 -5.1068 -0.8704 37 1 3.4209 -1.0458 2.5193 38 1 3.0006 -2.6747 3.1010 39 1 4.0787 -2.4814 1.6979 40 1 -0.1480 -1.9408 1.3205 41 1 0.5781 -2.4705 2.8570 42 1 0.6905 -0.7647 2.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287481871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:29 Heat of formation + Delta-G solvation = 43.405083 kcal Electronic energy + Delta-G solvation = -21993.188903 eV Core-core repulsion = 18940.597320 eV Total energy + Delta-G solvation = -3052.591583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.61431 -39.05963 -36.73048 -34.30880 -31.30229 -31.09522 -30.16707 -29.71495 -27.55531 -25.79233 -24.89892 -22.90882 -22.54134 -21.74889 -20.59486 -18.31759 -17.81359 -17.41009 -16.13284 -15.73525 -15.31191 -15.04271 -14.55767 -14.32631 -14.26903 -13.73476 -13.46051 -13.17918 -13.10794 -12.65081 -12.37410 -12.10387 -11.78270 -11.71989 -11.58802 -11.50242 -11.32766 -10.93696 -10.83225 -10.56316 -10.23326 -10.14689 -10.05162 -9.67223 -9.47580 -9.28094 -9.08369 -8.39461 -8.13615 -7.03317 -6.36810 -3.21884 1.26150 1.40839 3.37015 3.46461 3.55844 3.70952 3.73534 4.63271 4.70105 4.77816 4.85190 4.88562 4.93912 5.04969 5.16859 5.22544 5.30116 5.38099 5.51878 5.58266 5.69695 5.74692 5.88048 5.92087 6.00891 6.09754 6.13566 6.28796 6.29716 6.35183 6.38264 6.43526 6.44306 6.51624 6.60302 6.63372 6.74085 6.79989 6.86670 6.97073 7.60839 7.93511 8.41010 9.03601 9.62644 10.15291 11.09824 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.004481 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.074552 B = 6247.484763 C = 6419.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.583 5.583 3 C -0.354 4.354 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.910 5.910 7 Si 1.046 2.954 8 H -0.296 1.296 9 H -0.302 1.302 10 H -0.282 1.282 11 C 0.179 3.821 12 H 0.088 0.912 13 C -0.177 4.177 14 C 0.060 3.940 15 H 0.093 0.907 16 O -0.295 6.295 17 C 0.140 3.860 18 C -0.161 4.161 19 C -0.083 4.083 20 C -0.170 4.170 21 C -0.081 4.081 22 C -0.212 4.212 23 C -0.101 4.101 24 C -0.130 4.130 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.265 0.735 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -20.711 0.933 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.303 5.303 3 C -0.482 4.482 4 H 0.089 0.911 5 C -0.209 4.209 6 N -0.549 5.549 7 Si 0.878 3.122 8 H -0.224 1.224 9 H -0.230 1.230 10 H -0.209 1.209 11 C 0.069 3.931 12 H 0.106 0.894 13 C -0.216 4.216 14 C 0.003 3.997 15 H 0.110 0.890 16 O -0.207 6.207 17 C 0.094 3.906 18 C -0.179 4.179 19 C -0.101 4.101 20 C -0.188 4.188 21 C -0.099 4.099 22 C -0.231 4.231 23 C -0.104 4.104 24 C -0.188 4.188 25 C -0.175 4.175 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.887 -19.585 1.870 19.764 hybrid contribution 1.266 -1.102 -0.944 1.925 sum -0.621 -20.687 0.926 20.717 Atomic orbital electron populations 1.21609 0.84616 1.00061 0.98722 1.44010 1.00424 1.01291 1.84545 1.20202 0.97098 0.84549 1.46357 0.91064 1.25910 1.02511 0.91215 1.01229 1.70870 1.30519 1.27251 1.26233 0.84196 0.75978 0.74286 0.77759 1.22436 1.23042 1.20932 1.21546 0.95611 0.84416 0.91566 0.89411 1.24111 1.03076 0.97167 0.97240 1.24350 0.90682 0.86446 0.98203 0.88969 1.86210 1.48759 1.14793 1.70976 1.19172 0.93866 0.84955 0.92620 1.20478 1.01780 0.91536 1.04137 1.20930 0.97308 0.95427 0.96412 1.20995 0.97509 0.99285 1.01002 1.20941 0.98394 0.92310 0.98237 1.21348 1.01048 0.98137 1.02527 1.23077 0.96801 0.93106 0.97430 1.21667 0.96280 1.02274 0.98555 1.21612 0.95087 1.01750 0.99034 0.92989 0.93982 0.96285 0.92513 0.88594 0.91620 0.85435 0.85739 0.86289 0.86100 0.85321 0.91519 0.93469 0.93336 0.92431 0.93906 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.05 6.27 59.84 0.38 2.43 16 2 N -0.58 -13.55 2.67 -172.55 -0.46 -14.02 16 3 C -0.35 -9.71 9.91 -15.06 -0.15 -9.86 16 4 H 0.07 2.07 8.04 -52.49 -0.42 1.64 16 5 C -0.01 -0.19 5.08 -17.43 -0.09 -0.28 16 6 N -0.91 -27.92 13.70 55.49 0.76 -27.16 16 7 Si 1.05 26.05 24.50 -169.99 -4.16 21.89 16 8 H -0.30 -7.08 6.83 56.52 0.39 -6.69 16 9 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 10 H -0.28 -6.61 5.13 56.52 0.29 -6.32 16 11 C 0.18 3.44 3.89 -67.11 -0.26 3.18 16 12 H 0.09 1.69 8.01 -51.93 -0.42 1.28 16 13 C -0.18 -2.91 7.01 -25.82 -0.18 -3.10 16 14 C 0.06 0.90 3.06 -25.83 -0.08 0.82 16 15 H 0.09 1.25 5.87 -51.92 -0.30 0.95 16 16 O -0.29 -4.57 9.33 -19.41 -0.18 -4.75 16 17 C 0.14 1.94 6.68 -39.21 -0.26 1.68 16 18 C -0.16 -1.97 9.99 -39.43 -0.39 -2.37 16 19 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 20 C -0.17 -1.69 10.04 -39.56 -0.40 -2.09 16 21 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 22 C -0.21 -2.65 9.01 -39.43 -0.36 -3.00 16 23 C -0.10 -1.73 1.35 -153.69 -0.21 -1.93 16 24 C -0.13 -2.06 9.19 37.16 0.34 -1.72 16 25 C -0.12 -2.12 6.50 37.16 0.24 -1.88 16 26 H 0.05 1.22 6.27 -51.93 -0.33 0.90 16 27 H 0.04 0.80 5.00 -51.93 -0.26 0.54 16 28 H 0.02 0.42 3.30 -51.93 -0.17 0.25 16 29 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 30 H 0.10 1.66 5.14 -51.93 -0.27 1.39 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.52 5.95 -52.49 -0.31 1.20 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.68 7.94 -51.93 -0.41 0.26 16 40 H 0.06 1.03 5.58 -51.93 -0.29 0.74 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.47 5.37 -51.93 -0.28 1.19 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -30.11 317.32 -7.60 -37.71 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.12 Total: 2.16 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -2.21 Total: -20.62 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.30 Total: -41.17 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.18 Total: -4.75 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.16 Total: 21.89 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.11 -7.60 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.112 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds