Wall clock time and date at job start Mon Mar 30 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36932 * 120.00320 * 2 1 4 4 H 1.08001 * 120.00014 * 197.19759 * 3 2 1 5 5 C 1.38812 * 119.99995 * 17.19175 * 3 2 1 6 6 N 1.31616 * 120.00058 * 210.35166 * 5 3 2 7 7 Si 1.86804 * 119.99882 * 30.35231 * 5 3 2 8 8 H 1.48500 * 109.46910 * 265.68500 * 7 5 3 9 9 H 1.48496 * 109.46851 * 145.68212 * 7 5 3 10 10 H 1.48505 * 109.47007 * 25.68516 * 7 5 3 11 11 C 1.46503 * 119.99691 * 179.97438 * 2 1 3 12 12 H 1.09001 * 112.84838 * 163.24825 * 11 2 1 13 13 C 1.53783 * 113.61711 * 32.04696 * 11 2 1 14 14 C 1.53959 * 87.01793 * 220.05168 * 13 11 2 15 15 H 1.09011 * 113.60773 * 270.79804 * 14 13 11 16 16 O 1.42894 * 113.66892 * 139.93629 * 14 13 11 17 17 C 1.35896 * 117.00601 * 104.60705 * 16 14 13 18 18 C 1.38731 * 120.05957 * 173.69669 * 17 16 14 19 19 C 1.38149 * 119.94286 * 179.70058 * 18 17 16 20 20 C 1.38262 * 120.05455 * 0.59364 * 19 18 17 21 21 C 1.38267 * 120.11506 * 359.67677 * 20 19 18 22 22 C 1.38143 * 120.05310 * 0.02592 * 21 20 19 23 23 C 1.53774 * 87.11433 * 25.36199 * 14 13 11 24 24 C 1.53007 * 113.61516 * 220.09417 * 23 14 13 25 25 C 1.53000 * 113.61693 * 89.19241 * 23 14 13 26 26 H 1.09004 * 109.47093 * 32.19796 * 1 2 3 27 27 H 1.08998 * 109.47538 * 152.19622 * 1 2 3 28 28 H 1.08999 * 109.47674 * 272.19748 * 1 2 3 29 29 H 0.96995 * 120.00157 * 5.10200 * 6 5 3 30 30 H 1.09003 * 113.60874 * 334.56165 * 13 11 2 31 31 H 1.08991 * 113.61728 * 105.47192 * 13 11 2 32 32 H 1.07997 * 120.02783 * 359.97438 * 18 17 16 33 33 H 1.07996 * 119.97035 * 180.31506 * 19 18 17 34 34 H 1.08006 * 119.94174 * 179.70048 * 20 19 18 35 35 H 1.08001 * 119.97257 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.02989 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47337 * 157.49564 * 24 23 14 38 38 H 1.09000 * 109.46767 * 277.49947 * 24 23 14 39 39 H 1.09002 * 109.46984 * 37.49517 * 24 23 14 40 40 H 1.09004 * 109.46561 * 317.92182 * 25 23 14 41 41 H 1.08996 * 109.46739 * 77.92308 * 25 23 14 42 42 H 1.09002 * 109.46866 * 197.92620 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1935 1.2067 -0.2765 5 6 1.5022 2.3612 0.3553 6 7 1.8806 3.5062 -0.1718 7 14 0.0937 2.3176 1.5817 8 1 -1.1960 2.2279 0.8511 9 1 0.1132 3.5553 2.4019 10 1 0.2446 1.1348 2.4669 11 6 2.1974 -1.2688 0.0006 12 1 3.2420 -1.1546 -0.2890 13 6 1.4711 -2.3998 -0.7466 14 6 1.9395 -3.3369 0.3816 15 1 2.9134 -3.7903 0.1964 16 8 0.9522 -4.2883 0.7841 17 6 1.1244 -5.5703 0.3673 18 6 0.2794 -6.5699 0.8270 19 6 0.4529 -7.8712 0.3970 20 6 1.4752 -8.1799 -0.4812 21 6 2.3222 -7.1864 -0.9365 22 6 2.1492 -5.8825 -0.5143 23 6 2.0005 -2.0932 1.2838 24 6 3.2123 -2.0722 2.2177 25 6 0.6857 -1.7959 2.0076 26 1 -0.3633 0.8697 -0.5476 27 1 -0.3634 -0.9090 -0.4793 28 1 -0.3634 0.0394 1.0269 29 1 2.5611 3.5207 -0.8628 30 1 0.3893 -2.2720 -0.7870 31 1 1.9075 -2.6321 -1.7179 32 1 -0.5161 -6.3302 1.5170 33 1 -0.2079 -8.6489 0.7506 34 1 1.6121 -9.1987 -0.8124 35 1 3.1198 -7.4300 -1.6228 36 1 2.8108 -5.1068 -0.8704 37 1 3.4209 -1.0458 2.5193 38 1 3.0006 -2.6747 3.1010 39 1 4.0787 -2.4814 1.6979 40 1 -0.1480 -1.9408 1.3205 41 1 0.5781 -2.4705 2.8570 42 1 0.6905 -0.7647 2.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287481871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:28 Heat of formation + Delta-G solvation = 26.308969 kcal Electronic energy + Delta-G solvation = -21993.930246 eV Core-core repulsion = 18940.597320 eV Total energy + Delta-G solvation = -3053.332926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83921 -40.15265 -37.86331 -36.09854 -33.31848 -31.98604 -31.46032 -30.64671 -29.11324 -27.35612 -26.49966 -24.32067 -23.47953 -22.93738 -22.05402 -19.60365 -19.32785 -19.14192 -17.30174 -16.75125 -16.66772 -16.46311 -15.85513 -15.84185 -15.56636 -15.02688 -14.83081 -14.43010 -14.29749 -14.10807 -13.94929 -13.36310 -13.21394 -13.18389 -13.04567 -12.77983 -12.49024 -12.42754 -12.06415 -11.95780 -11.78952 -11.72314 -11.47884 -11.40244 -11.19498 -10.95696 -10.50191 -9.90920 -9.08572 -8.97896 -8.61384 -5.38475 0.43595 0.54634 1.44560 1.55370 1.72458 2.28370 2.57159 2.88814 3.03504 3.42030 3.46362 3.59528 3.75235 3.96506 3.98181 4.05397 4.25222 4.33617 4.37196 4.42290 4.54522 4.59477 4.62929 4.65491 4.72771 4.80665 4.84117 4.85335 4.97511 5.06043 5.08622 5.12949 5.21550 5.23801 5.39440 5.48237 5.50871 5.54974 5.64130 5.77682 5.94719 6.23920 6.57720 6.90759 7.62697 8.06907 8.86254 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.004481 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.074552 B = 6247.484763 C = 6419.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.596 5.596 3 C -0.334 4.334 4 H 0.043 0.957 5 C -0.061 4.061 6 N -0.951 5.951 7 Si 1.084 2.916 8 H -0.280 1.280 9 H -0.313 1.313 10 H -0.261 1.261 11 C 0.161 3.839 12 H 0.081 0.919 13 C -0.167 4.167 14 C 0.080 3.920 15 H 0.112 0.888 16 O -0.309 6.309 17 C 0.110 3.890 18 C -0.174 4.174 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.086 4.086 22 C -0.223 4.223 23 C -0.101 4.101 24 C -0.128 4.128 25 C -0.113 4.113 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.251 0.749 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -24.566 1.190 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.317 5.317 3 C -0.464 4.464 4 H 0.061 0.939 5 C -0.256 4.256 6 N -0.593 5.593 7 Si 0.912 3.088 8 H -0.207 1.207 9 H -0.242 1.242 10 H -0.186 1.186 11 C 0.053 3.947 12 H 0.099 0.901 13 C -0.206 4.206 14 C 0.024 3.976 15 H 0.129 0.871 16 O -0.222 6.222 17 C 0.065 3.935 18 C -0.193 4.193 19 C -0.101 4.101 20 C -0.184 4.184 21 C -0.104 4.104 22 C -0.242 4.242 23 C -0.105 4.105 24 C -0.185 4.185 25 C -0.170 4.170 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.517 -23.517 2.125 23.746 hybrid contribution 1.534 -0.111 -1.093 1.887 sum -0.983 -23.628 1.032 23.671 Atomic orbital electron populations 1.21642 0.83688 1.00588 0.98991 1.44025 1.01159 1.01417 1.85120 1.20113 0.96025 0.86371 1.43869 0.93902 1.26909 1.05011 0.91052 1.02676 1.70970 1.32032 1.28499 1.27779 0.83689 0.74415 0.74527 0.76173 1.20654 1.24190 1.18625 1.21778 0.95385 0.83546 0.94039 0.90068 1.23996 1.02315 0.95967 0.98350 1.24037 0.91577 0.86038 0.95966 0.87094 1.86156 1.48822 1.15678 1.71563 1.19435 0.95423 0.84410 0.94231 1.20713 1.01838 0.92191 1.04509 1.21299 0.97653 0.95220 0.95901 1.21412 0.96580 1.00524 0.99934 1.21287 0.99079 0.91747 0.98310 1.21487 1.00906 0.99187 1.02606 1.22941 0.97012 0.93749 0.96749 1.21643 0.96457 1.01295 0.99120 1.21529 0.95526 1.00330 0.99622 0.95069 0.91111 0.95676 0.93961 0.89209 0.90185 0.85177 0.83029 0.83501 0.83843 0.85091 0.93769 0.91984 0.91533 0.92424 0.92424 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.04 6.27 127.77 0.80 4.85 16 2 N -0.60 -27.70 2.67 -699.83 -1.87 -29.57 16 3 C -0.33 -18.80 9.91 84.03 0.83 -17.97 16 4 H 0.04 2.60 8.04 -2.91 -0.02 2.58 16 5 C -0.06 -3.57 5.08 84.86 0.43 -3.14 16 6 N -0.95 -60.54 13.70 21.65 0.30 -60.24 16 7 Si 1.08 53.36 24.50 68.60 1.68 55.04 16 8 H -0.28 -12.91 6.83 99.48 0.68 -12.23 16 9 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 10 H -0.26 -11.78 5.13 99.48 0.51 -11.27 16 11 C 0.16 6.06 3.89 45.52 0.18 6.24 16 12 H 0.08 3.13 8.01 -2.39 -0.02 3.11 16 13 C -0.17 -5.20 7.01 31.18 0.22 -4.98 16 14 C 0.08 2.25 3.06 31.18 0.10 2.35 16 15 H 0.11 2.71 5.87 -2.38 -0.01 2.69 16 16 O -0.31 -8.89 9.33 -92.38 -0.86 -9.75 16 17 C 0.11 2.80 6.68 22.51 0.15 2.95 16 18 C -0.17 -3.84 9.99 22.37 0.22 -3.62 16 19 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 20 C -0.17 -2.66 10.04 22.28 0.22 -2.43 16 21 C -0.09 -1.55 10.04 22.25 0.22 -1.32 16 22 C -0.22 -4.97 9.01 22.37 0.20 -4.77 16 23 C -0.10 -3.32 1.35 -51.65 -0.07 -3.39 16 24 C -0.13 -3.84 9.19 71.98 0.66 -3.18 16 25 C -0.11 -3.88 6.50 71.98 0.47 -3.41 16 26 H 0.03 1.45 6.27 -2.38 -0.01 1.43 16 27 H 0.07 2.58 5.00 -2.39 -0.01 2.57 16 28 H 0.03 1.07 3.30 -2.39 -0.01 1.06 16 29 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 30 H 0.09 2.92 5.14 -2.39 -0.01 2.91 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.73 5.95 -2.91 -0.02 2.72 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.72 7.94 -2.39 -0.02 1.71 16 40 H 0.06 1.94 5.58 -2.39 -0.01 1.93 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.78 5.37 -2.39 -0.01 1.77 16 Total: -1.00 -66.60 317.32 4.86 -61.74 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.75 Total: 15.81 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.86 Total: -33.03 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -1.57 Total: -89.81 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.86 Total: -9.75 kcal Atomic # 14 Polarization: 53.36 SS G_CDS: 1.68 Total: 55.04 kcal Total: -66.60 4.86 -61.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.045 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds