Wall clock time and date at job start Mon Mar 30 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99924 * 2 1 4 4 H 1.07999 * 120.00403 * 186.78134 * 3 2 1 5 5 C 1.38817 * 119.99712 * 6.79510 * 3 2 1 6 6 N 1.31615 * 120.00158 * 354.87248 * 5 3 2 7 7 Si 1.86805 * 119.99713 * 174.87401 * 5 3 2 8 8 H 1.48500 * 109.47049 * 59.99604 * 7 5 3 9 9 H 1.48500 * 109.46739 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47458 * 299.99678 * 7 5 3 11 11 C 1.46500 * 120.00156 * 180.02562 * 2 1 3 12 12 H 1.09000 * 112.84559 * 64.40965 * 11 2 1 13 13 C 1.53779 * 113.61475 * 195.71595 * 11 2 1 14 14 C 1.53781 * 87.08136 * 89.11630 * 13 11 2 15 15 H 1.08995 * 113.61754 * 139.97939 * 14 13 11 16 16 O 1.42903 * 113.69119 * 270.87271 * 14 13 11 17 17 C 1.35899 * 116.99999 * 253.94778 * 16 14 13 18 18 C 1.38730 * 120.05458 * 5.13549 * 17 16 14 19 19 C 1.38152 * 119.94237 * 179.70284 * 18 17 16 20 20 C 1.38263 * 120.05427 * 0.59084 * 19 18 17 21 21 C 1.38270 * 120.10836 * 359.68290 * 20 19 18 22 22 C 1.38143 * 120.06282 * 0.02562 * 21 20 19 23 23 C 1.53776 * 113.61626 * 293.21518 * 11 2 1 24 24 C 1.52999 * 113.61494 * 25.42998 * 23 11 2 25 25 C 1.52999 * 113.61795 * 156.33590 * 23 11 2 26 26 H 1.09000 * 109.47040 * 55.57609 * 1 2 3 27 27 H 1.09005 * 109.46970 * 295.57665 * 1 2 3 28 28 H 1.08999 * 109.47101 * 175.57902 * 1 2 3 29 29 H 0.97002 * 120.00125 * 180.02562 * 6 5 3 30 30 H 1.09003 * 113.61649 * 203.66452 * 13 11 2 31 31 H 1.09006 * 113.61524 * 334.57236 * 13 11 2 32 32 H 1.08003 * 120.03072 * 359.97438 * 18 17 16 33 33 H 1.07996 * 119.97345 * 180.27487 * 19 18 17 34 34 H 1.07999 * 119.94637 * 179.70552 * 20 19 18 35 35 H 1.08004 * 119.97049 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.03203 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.46962 * 65.43966 * 24 23 11 38 38 H 1.08998 * 109.47916 * 185.44132 * 24 23 11 39 39 H 1.09004 * 109.47303 * 305.44734 * 24 23 11 40 40 H 1.09005 * 109.47022 * 59.99694 * 25 23 11 41 41 H 1.08998 * 109.47321 * 180.02562 * 25 23 11 42 42 H 1.09002 * 109.46800 * 300.00342 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2240 1.1893 -0.1104 5 6 1.4628 2.3838 0.1422 6 7 0.1471 2.3881 0.1757 7 14 2.4061 3.9898 0.2862 8 1 3.2298 4.1910 -0.9329 9 1 1.4479 5.1156 0.4271 10 1 3.2902 3.9396 1.4781 11 6 2.1976 -1.2687 -0.0006 12 1 2.0334 -1.8517 -0.9068 13 6 3.6802 -1.1241 0.3812 14 6 3.2415 -1.3168 1.8424 15 1 3.9216 -1.9390 2.4241 16 8 2.9010 -0.0974 2.5052 17 6 3.7889 0.3775 3.4179 18 6 5.0104 -0.2563 3.5939 19 6 5.9138 0.2321 4.5181 20 6 5.5964 1.3442 5.2758 21 6 4.3773 1.9742 5.1062 22 6 3.4729 1.4934 4.1792 23 6 2.0246 -2.0805 1.2940 24 6 0.7234 -1.7762 2.0390 25 6 2.2717 -3.5797 1.1149 26 1 -0.3633 0.5809 -0.8477 27 1 -0.3633 0.4437 0.9270 28 1 -0.3633 -1.0246 -0.0792 29 1 -0.3328 3.2252 0.2747 30 1 4.3089 -1.9308 0.0040 31 1 4.0898 -0.1352 0.1750 32 1 5.2567 -1.1281 3.0059 33 1 6.8666 -0.2582 4.6523 34 1 6.3020 1.7217 6.0011 35 1 4.1315 2.8425 5.6996 36 1 2.5207 1.9856 4.0474 37 1 -0.1250 -2.0951 1.4336 38 1 0.7142 -2.3119 2.9882 39 1 0.6538 -0.7045 2.2259 40 1 3.2910 -3.7406 0.7638 41 1 2.1312 -4.0876 2.0691 42 1 1.5684 -3.9791 0.3841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287481877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:32 Heat of formation + Delta-G solvation = 44.548320 kcal Electronic energy + Delta-G solvation = -22864.306553 eV Core-core repulsion = 19811.764544 eV Total energy + Delta-G solvation = -3052.542008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74841 -39.98499 -37.51701 -35.93782 -32.43627 -31.99499 -31.58743 -30.56258 -28.10743 -27.42176 -26.39415 -24.41487 -23.44635 -22.71023 -22.49755 -19.42829 -19.09500 -18.07210 -17.01160 -16.75206 -16.56982 -16.35681 -15.67590 -15.60991 -15.20390 -15.03080 -14.69979 -14.28766 -13.95898 -13.83525 -13.42690 -13.26888 -13.11173 -12.98192 -12.72051 -12.69369 -12.57829 -12.37820 -12.17305 -12.13210 -11.82013 -11.56371 -11.51987 -11.32355 -11.01665 -10.65773 -10.41396 -9.89525 -8.96635 -8.72478 -7.62380 -5.00254 0.44908 0.60907 1.40396 1.44375 1.48800 2.42043 2.56888 2.91711 3.42482 3.59975 3.74987 3.76131 3.96022 4.00996 4.02956 4.16550 4.33303 4.43802 4.46103 4.55627 4.69215 4.73313 4.79733 4.83453 4.88884 4.92149 5.02781 5.12038 5.14696 5.22459 5.24277 5.29875 5.46828 5.53228 5.60200 5.63676 5.68746 5.72834 5.79294 5.97732 6.02510 6.42048 6.82952 7.31120 8.05280 8.42768 9.36722 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.010044 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.529771 B = 2786.937711 C = 4312.332070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.199 3.801 2 N -0.596 5.596 3 C -0.200 4.200 4 H 0.074 0.926 5 C -0.063 4.063 6 N -0.950 5.950 7 Si 0.944 3.056 8 H -0.282 1.282 9 H -0.300 1.300 10 H -0.287 1.287 11 C 0.155 3.845 12 H 0.046 0.954 13 C -0.161 4.161 14 C 0.072 3.928 15 H 0.097 0.903 16 O -0.281 6.281 17 C 0.119 3.881 18 C -0.223 4.223 19 C -0.078 4.078 20 C -0.170 4.170 21 C -0.086 4.086 22 C -0.189 4.189 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.007 0.993 27 H 0.011 0.989 28 H 0.018 0.982 29 H 0.236 0.764 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.650 -10.865 7.695 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.319 5.319 3 C -0.330 4.330 4 H 0.092 0.908 5 C -0.254 4.254 6 N -0.603 5.603 7 Si 0.776 3.224 8 H -0.208 1.208 9 H -0.226 1.226 10 H -0.214 1.214 11 C 0.048 3.952 12 H 0.064 0.936 13 C -0.198 4.198 14 C 0.016 3.984 15 H 0.114 0.886 16 O -0.193 6.193 17 C 0.073 3.927 18 C -0.242 4.242 19 C -0.096 4.096 20 C -0.188 4.188 21 C -0.104 4.104 22 C -0.208 4.208 23 C -0.103 4.103 24 C -0.176 4.176 25 C -0.171 4.171 26 H 0.026 0.974 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.352 -10.644 7.616 16.688 hybrid contribution -0.168 1.546 -0.094 1.558 sum 10.184 -9.098 7.522 15.591 Atomic orbital electron populations 1.20648 0.82058 0.93213 0.98557 1.43757 1.01909 1.00659 1.85586 1.19327 0.91291 0.84326 1.38093 0.90839 1.25306 0.96195 0.99898 1.04030 1.70383 1.05837 1.24019 1.60017 0.85637 0.77588 0.81349 0.77866 1.20833 1.22609 1.21376 1.21586 0.92207 0.86777 0.94633 0.93622 1.23743 0.97015 1.03006 0.96086 1.23400 0.98107 0.84472 0.92435 0.88589 1.86443 1.42945 1.39501 1.50393 1.19527 0.90127 0.93944 0.89131 1.21492 0.94264 1.03809 1.04608 1.21327 0.99171 0.95564 0.93561 1.21350 0.97241 0.97703 1.02491 1.21199 0.93613 0.99434 0.96180 1.20580 1.01699 0.98290 1.00204 1.22748 0.93978 0.96220 0.97394 1.21521 0.96449 1.01028 0.98560 1.21494 1.02849 0.90156 1.02572 0.97410 0.97088 0.96380 0.95414 0.85842 0.92100 0.83947 0.82682 0.83040 0.84092 0.88433 0.93172 0.93277 0.94142 0.90604 0.91368 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.39 6.97 127.77 0.89 11.29 16 2 N -0.60 -29.96 2.36 -699.83 -1.65 -31.62 16 3 C -0.20 -11.12 8.05 84.03 0.68 -10.45 16 4 H 0.07 4.02 5.47 -2.91 -0.02 4.01 16 5 C -0.06 -3.69 5.46 84.86 0.46 -3.23 16 6 N -0.95 -58.75 9.45 21.65 0.20 -58.54 16 7 Si 0.94 48.53 29.56 68.60 2.03 50.56 16 8 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 9 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 10 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 11 C 0.16 6.07 4.01 45.52 0.18 6.25 16 12 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 13 C -0.16 -5.47 6.88 31.12 0.21 -5.26 16 14 C 0.07 2.44 3.18 31.12 0.10 2.53 16 15 H 0.10 2.63 5.88 -2.39 -0.01 2.62 16 16 O -0.28 -11.97 7.09 -92.42 -0.66 -12.62 16 17 C 0.12 4.56 6.68 22.51 0.15 4.71 16 18 C -0.22 -6.67 9.02 22.37 0.20 -6.47 16 19 C -0.08 -1.91 10.04 22.26 0.22 -1.69 16 20 C -0.17 -4.19 10.04 22.28 0.22 -3.96 16 21 C -0.09 -2.60 10.04 22.25 0.22 -2.37 16 22 C -0.19 -7.30 9.99 22.37 0.22 -7.08 16 23 C -0.10 -3.29 1.35 -51.66 -0.07 -3.36 16 24 C -0.12 -4.39 7.32 71.98 0.53 -3.86 16 25 C -0.11 -2.55 9.07 71.98 0.65 -1.90 16 26 H 0.01 0.43 7.03 -2.39 -0.02 0.41 16 27 H 0.01 0.62 6.26 -2.38 -0.01 0.61 16 28 H 0.02 0.81 6.28 -2.39 -0.01 0.80 16 29 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.12 3.09 7.65 -2.39 -0.02 3.07 16 31 H 0.06 2.46 5.60 -2.38 -0.01 2.45 16 32 H 0.14 3.62 5.89 -2.91 -0.02 3.60 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.05 1.80 6.62 -2.39 -0.02 1.79 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.88 5.29 -2.38 -0.01 1.87 16 40 H 0.08 1.40 7.34 -2.38 -0.02 1.38 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -69.73 320.26 5.81 -63.91 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.01 Total: 13.14 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.88 Total: -24.83 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.45 Total: -90.16 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.66 Total: -12.62 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -69.73 5.81 -63.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.460 kcal (2) G-P(sol) polarization free energy of solvation -69.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds