Wall clock time and date at job start Mon Mar 30 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99967 * 2 1 4 4 H 1.08000 * 120.00441 * 196.17101 * 3 2 1 5 5 C 1.38821 * 119.99746 * 16.16590 * 3 2 1 6 6 N 1.31619 * 119.99768 * 20.42601 * 5 3 2 7 7 Si 1.86797 * 119.99892 * 200.69509 * 5 3 2 8 8 H 1.48496 * 109.47221 * 264.73813 * 7 5 3 9 9 H 1.48504 * 109.47198 * 24.73696 * 7 5 3 10 10 H 1.48501 * 109.47054 * 144.73666 * 7 5 3 11 11 C 1.46502 * 120.00044 * 180.02562 * 2 1 3 12 12 H 1.08998 * 112.84834 * 162.75562 * 11 2 1 13 13 C 1.53774 * 113.61709 * 31.55651 * 11 2 1 14 14 C 1.53947 * 87.02170 * 220.05102 * 13 11 2 15 15 H 1.09000 * 113.67108 * 139.93513 * 14 13 11 16 16 O 1.42907 * 113.61470 * 270.80254 * 14 13 11 17 17 C 1.35900 * 116.99925 * 253.23484 * 16 14 13 18 18 C 1.38734 * 120.05597 * 5.19033 * 17 16 14 19 19 C 1.38149 * 119.94354 * 179.70334 * 18 17 16 20 20 C 1.38270 * 120.05190 * 0.59845 * 19 18 17 21 21 C 1.38259 * 120.11155 * 359.67699 * 20 19 18 22 22 C 1.38142 * 120.06029 * 0.02562 * 21 20 19 23 23 C 1.53779 * 87.11197 * 25.36208 * 14 13 11 24 24 C 1.53001 * 113.61573 * 220.09248 * 23 14 13 25 25 C 1.53000 * 113.68924 * 89.19973 * 23 14 13 26 26 H 1.08998 * 109.46923 * 32.99778 * 1 2 3 27 27 H 1.09001 * 109.46602 * 152.99318 * 1 2 3 28 28 H 1.08990 * 109.47354 * 272.99134 * 1 2 3 29 29 H 0.97000 * 119.99480 * 180.27126 * 6 5 3 30 30 H 1.09001 * 113.61494 * 334.57021 * 13 11 2 31 31 H 1.09005 * 113.61518 * 105.47039 * 13 11 2 32 32 H 1.08004 * 120.02942 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.97404 * 180.27731 * 19 18 17 34 34 H 1.08004 * 119.94059 * 179.70094 * 20 19 18 35 35 H 1.08001 * 119.97011 * 180.02562 * 21 20 19 36 36 H 1.07991 * 120.03045 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.47270 * 157.49927 * 24 23 14 38 38 H 1.09008 * 109.46958 * 277.49340 * 24 23 14 39 39 H 1.08998 * 109.47015 * 37.49305 * 24 23 14 40 40 H 1.09004 * 109.47381 * 321.57631 * 25 23 14 41 41 H 1.08999 * 109.47254 * 81.57857 * 25 23 14 42 42 H 1.09005 * 109.47116 * 201.57617 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1977 1.2045 -0.2605 5 6 1.4967 2.3643 0.3347 6 7 0.3763 2.3228 1.0242 7 14 2.2042 4.0084 -0.1998 8 1 3.0265 4.5744 0.8995 9 1 3.0525 3.8145 -1.4032 10 1 1.0960 4.9433 -0.5208 11 6 2.1976 -1.2687 -0.0006 12 1 3.2400 -1.1555 -0.2983 13 6 1.4659 -2.4022 -0.7384 14 6 1.9426 -3.3355 0.3892 15 1 1.1918 -4.0602 0.7043 16 8 3.2176 -3.9306 0.1392 17 6 3.2297 -5.2506 -0.1841 18 6 2.0352 -5.9327 -0.3646 19 6 2.0502 -7.2729 -0.6992 20 6 3.2543 -7.9375 -0.8420 21 6 4.4459 -7.2613 -0.6570 22 6 4.4364 -5.9196 -0.3284 23 6 2.0102 -2.0887 1.2868 24 6 3.2289 -2.0646 2.2116 25 6 0.7017 -1.7876 2.0203 26 1 -0.3633 0.8619 -0.5597 27 1 -0.3632 -0.9156 -0.4667 28 1 -0.3633 0.0536 1.0262 29 1 -0.0820 3.1461 1.2547 30 1 0.3838 -2.2746 -0.7714 31 1 1.8951 -2.6378 -1.7123 32 1 1.0943 -5.4150 -0.2488 33 1 1.1207 -7.8033 -0.8443 34 1 3.2638 -8.9865 -1.0989 35 1 5.3851 -7.7826 -0.7695 36 1 5.3675 -5.3918 -0.1844 37 1 3.4396 -1.0371 2.5083 38 1 3.0237 -2.6640 3.0987 39 1 4.0913 -2.4755 1.6869 40 1 -0.1408 -1.9966 1.3610 41 1 0.6312 -2.4139 2.9096 42 1 0.6824 -0.7378 2.3129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287481883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:37 Heat of formation + Delta-G solvation = 45.650178 kcal Electronic energy + Delta-G solvation = -21876.646633 eV Core-core repulsion = 18824.152405 eV Total energy + Delta-G solvation = -3052.494228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54098 -38.90310 -36.58547 -34.07691 -31.05455 -30.73207 -30.00990 -29.38608 -27.37737 -25.49693 -24.92124 -23.03235 -22.51035 -21.52304 -20.69748 -18.41790 -17.42784 -16.75895 -15.88407 -15.64735 -15.21816 -14.77090 -14.46706 -14.24467 -13.95249 -13.68192 -13.42527 -13.08812 -12.60515 -12.26533 -12.19616 -12.02414 -11.64580 -11.58681 -11.25472 -11.09947 -11.00135 -10.90282 -10.73597 -10.55686 -10.36998 -10.17470 -9.92518 -9.75079 -9.53491 -9.27874 -9.02592 -8.41681 -8.08484 -6.76478 -5.73842 -3.08640 1.31541 1.45958 3.33841 3.39856 3.47585 3.50499 3.78632 4.52762 4.79793 4.85250 5.00155 5.04272 5.06618 5.26428 5.35288 5.35976 5.39940 5.61379 5.63769 5.76175 5.86245 5.93643 5.97706 6.08619 6.19694 6.28913 6.32154 6.36600 6.40945 6.49261 6.52592 6.59282 6.77500 6.79984 6.81885 6.88814 7.06970 7.14781 7.39795 7.67496 7.70377 7.84704 8.37963 9.24658 9.90250 10.37450 11.32778 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.004160 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.891849 B = 6728.933053 C = 6906.043371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.582 5.582 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.904 5.904 7 Si 0.898 3.102 8 H -0.289 1.289 9 H -0.280 1.280 10 H -0.291 1.291 11 C 0.183 3.817 12 H 0.084 0.916 13 C -0.179 4.179 14 C 0.058 3.942 15 H 0.078 0.922 16 O -0.287 6.287 17 C 0.142 3.858 18 C -0.212 4.212 19 C -0.081 4.081 20 C -0.170 4.170 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.117 4.117 26 H 0.044 0.956 27 H 0.004 0.996 28 H 0.035 0.965 29 H 0.251 0.749 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -17.466 -1.490 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.300 5.300 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.728 3.272 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.217 1.217 11 C 0.073 3.927 12 H 0.102 0.898 13 C -0.218 4.218 14 C 0.002 3.998 15 H 0.095 0.905 16 O -0.199 6.199 17 C 0.095 3.905 18 C -0.230 4.230 19 C -0.099 4.099 20 C -0.188 4.188 21 C -0.101 4.101 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.183 4.183 25 C -0.174 4.174 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.883 -17.115 -1.431 17.415 hybrid contribution 0.050 0.802 -0.219 0.833 sum 2.933 -16.313 -1.650 16.656 Atomic orbital electron populations 1.21103 0.82725 0.95905 0.99488 1.43912 1.01751 1.00338 1.84041 1.19240 0.94982 0.84302 1.39761 0.91198 1.24792 0.97935 0.97877 0.99067 1.70127 1.19365 1.26291 1.39154 0.86345 0.77973 0.84303 0.78616 1.21673 1.20590 1.21675 1.21747 0.95355 0.84414 0.91229 0.89817 1.24114 1.02274 0.97802 0.97597 1.23645 0.83094 0.93921 0.99189 0.90463 1.86099 1.31844 1.19685 1.82314 1.19161 0.93949 0.83787 0.93554 1.21368 0.97817 0.96094 1.07742 1.20937 0.98042 0.93761 0.97183 1.20991 0.92548 1.00025 1.05250 1.20919 0.98212 0.93410 0.97559 1.20465 0.96362 0.94567 1.06430 1.22998 0.96729 0.93425 0.97371 1.21509 0.97235 1.01559 0.97973 1.21675 0.94440 1.03383 0.97916 0.93720 0.97794 0.94729 0.93868 0.88425 0.91619 0.85177 0.86128 0.86320 0.85732 0.85353 0.92136 0.94183 0.92451 0.92983 0.94588 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.58 6.83 59.85 0.41 3.98 16 2 N -0.58 -14.15 2.76 -172.56 -0.48 -14.62 16 3 C -0.25 -6.89 9.70 -15.06 -0.15 -7.03 16 4 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 5 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 6 N -0.90 -25.75 10.78 55.49 0.60 -25.16 16 7 Si 0.90 21.78 29.60 -169.99 -5.03 16.75 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 C 0.18 3.76 3.82 -67.12 -0.26 3.50 16 12 H 0.08 1.80 8.01 -51.93 -0.42 1.38 16 13 C -0.18 -3.11 7.00 -25.83 -0.18 -3.29 16 14 C 0.06 0.93 3.21 -25.83 -0.08 0.85 16 15 H 0.08 1.13 5.84 -51.93 -0.30 0.83 16 16 O -0.29 -4.64 8.60 -19.43 -0.17 -4.81 16 17 C 0.14 2.04 6.68 -39.22 -0.26 1.78 16 18 C -0.21 -2.74 9.02 -39.43 -0.36 -3.10 16 19 C -0.08 -0.90 10.04 -39.60 -0.40 -1.29 16 20 C -0.17 -1.75 10.04 -39.56 -0.40 -2.15 16 21 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 22 C -0.16 -2.02 9.99 -39.43 -0.39 -2.42 16 23 C -0.10 -1.84 1.35 -153.70 -0.21 -2.05 16 24 C -0.13 -2.20 9.04 37.16 0.34 -1.87 16 25 C -0.12 -2.14 7.20 37.16 0.27 -1.87 16 26 H 0.04 1.16 6.93 -51.93 -0.36 0.80 16 27 H 0.00 0.08 5.00 -51.93 -0.26 -0.18 16 28 H 0.03 0.86 5.46 -51.93 -0.28 0.57 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.10 1.68 5.13 -51.93 -0.27 1.41 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.13 1.61 5.88 -52.48 -0.31 1.30 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.06 0.98 6.96 -51.93 -0.36 0.61 16 40 H 0.05 0.90 5.95 -51.93 -0.31 0.60 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.95 6.55 -51.93 -0.34 1.61 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -28.80 324.70 -8.48 -37.28 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.14 Total: 1.95 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.15 Total: -16.28 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.12 Total: -39.78 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.17 Total: -4.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.80 -8.48 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.926 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds