Wall clock time and date at job start Mon Mar 30 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99967 * 2 1 4 4 H 1.08000 * 120.00441 * 196.17101 * 3 2 1 5 5 C 1.38821 * 119.99746 * 16.16590 * 3 2 1 6 6 N 1.31619 * 119.99768 * 20.42601 * 5 3 2 7 7 Si 1.86797 * 119.99892 * 200.69509 * 5 3 2 8 8 H 1.48496 * 109.47221 * 264.73813 * 7 5 3 9 9 H 1.48504 * 109.47198 * 24.73696 * 7 5 3 10 10 H 1.48501 * 109.47054 * 144.73666 * 7 5 3 11 11 C 1.46502 * 120.00044 * 180.02562 * 2 1 3 12 12 H 1.08998 * 112.84834 * 162.75562 * 11 2 1 13 13 C 1.53774 * 113.61709 * 31.55651 * 11 2 1 14 14 C 1.53947 * 87.02170 * 220.05102 * 13 11 2 15 15 H 1.09000 * 113.67108 * 139.93513 * 14 13 11 16 16 O 1.42907 * 113.61470 * 270.80254 * 14 13 11 17 17 C 1.35900 * 116.99925 * 253.23484 * 16 14 13 18 18 C 1.38734 * 120.05597 * 5.19033 * 17 16 14 19 19 C 1.38149 * 119.94354 * 179.70334 * 18 17 16 20 20 C 1.38270 * 120.05190 * 0.59845 * 19 18 17 21 21 C 1.38259 * 120.11155 * 359.67699 * 20 19 18 22 22 C 1.38142 * 120.06029 * 0.02562 * 21 20 19 23 23 C 1.53779 * 87.11197 * 25.36208 * 14 13 11 24 24 C 1.53001 * 113.61573 * 220.09248 * 23 14 13 25 25 C 1.53000 * 113.68924 * 89.19973 * 23 14 13 26 26 H 1.08998 * 109.46923 * 32.99778 * 1 2 3 27 27 H 1.09001 * 109.46602 * 152.99318 * 1 2 3 28 28 H 1.08990 * 109.47354 * 272.99134 * 1 2 3 29 29 H 0.97000 * 119.99480 * 180.27126 * 6 5 3 30 30 H 1.09001 * 113.61494 * 334.57021 * 13 11 2 31 31 H 1.09005 * 113.61518 * 105.47039 * 13 11 2 32 32 H 1.08004 * 120.02942 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.97404 * 180.27731 * 19 18 17 34 34 H 1.08004 * 119.94059 * 179.70094 * 20 19 18 35 35 H 1.08001 * 119.97011 * 180.02562 * 21 20 19 36 36 H 1.07991 * 120.03045 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.47270 * 157.49927 * 24 23 14 38 38 H 1.09008 * 109.46958 * 277.49340 * 24 23 14 39 39 H 1.08998 * 109.47015 * 37.49305 * 24 23 14 40 40 H 1.09004 * 109.47381 * 321.57631 * 25 23 14 41 41 H 1.08999 * 109.47254 * 81.57857 * 25 23 14 42 42 H 1.09005 * 109.47116 * 201.57617 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1977 1.2045 -0.2605 5 6 1.4967 2.3643 0.3347 6 7 0.3763 2.3228 1.0242 7 14 2.2042 4.0084 -0.1998 8 1 3.0265 4.5744 0.8995 9 1 3.0525 3.8145 -1.4032 10 1 1.0960 4.9433 -0.5208 11 6 2.1976 -1.2687 -0.0006 12 1 3.2400 -1.1555 -0.2983 13 6 1.4659 -2.4022 -0.7384 14 6 1.9426 -3.3355 0.3892 15 1 1.1918 -4.0602 0.7043 16 8 3.2176 -3.9306 0.1392 17 6 3.2297 -5.2506 -0.1841 18 6 2.0352 -5.9327 -0.3646 19 6 2.0502 -7.2729 -0.6992 20 6 3.2543 -7.9375 -0.8420 21 6 4.4459 -7.2613 -0.6570 22 6 4.4364 -5.9196 -0.3284 23 6 2.0102 -2.0887 1.2868 24 6 3.2289 -2.0646 2.2116 25 6 0.7017 -1.7876 2.0203 26 1 -0.3633 0.8619 -0.5597 27 1 -0.3632 -0.9156 -0.4667 28 1 -0.3633 0.0536 1.0262 29 1 -0.0820 3.1461 1.2547 30 1 0.3838 -2.2746 -0.7714 31 1 1.8951 -2.6378 -1.7123 32 1 1.0943 -5.4150 -0.2488 33 1 1.1207 -7.8033 -0.8443 34 1 3.2638 -8.9865 -1.0989 35 1 5.3851 -7.7826 -0.7695 36 1 5.3675 -5.3918 -0.1844 37 1 3.4396 -1.0371 2.5083 38 1 3.0237 -2.6640 3.0987 39 1 4.0913 -2.4755 1.6869 40 1 -0.1408 -1.9966 1.3610 41 1 0.6312 -2.4139 2.9096 42 1 0.6824 -0.7378 2.3129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287481883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:36 Heat of formation + Delta-G solvation = 31.406644 kcal Electronic energy + Delta-G solvation = -21877.264279 eV Core-core repulsion = 18824.152405 eV Total energy + Delta-G solvation = -3053.111874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81660 -40.05415 -37.78843 -35.90102 -32.65698 -31.95453 -31.32360 -30.50368 -29.03395 -27.30132 -26.47618 -24.46711 -23.47686 -22.67428 -22.32754 -19.57488 -18.84142 -18.64291 -17.23987 -16.69405 -16.59564 -16.19371 -15.98381 -15.56536 -15.25514 -15.14426 -14.77364 -14.29645 -14.02443 -13.84893 -13.55444 -13.29797 -13.15115 -13.00924 -12.74276 -12.71289 -12.48534 -12.42989 -12.37909 -12.15495 -11.84696 -11.75453 -11.72000 -11.49472 -11.02250 -10.78350 -10.45371 -9.89358 -9.07330 -8.73613 -7.82584 -5.18464 0.45143 0.55689 1.44866 1.47419 1.56752 2.19570 2.52910 2.90253 3.28536 3.55107 3.62209 3.71406 3.95848 4.01217 4.06667 4.16967 4.23781 4.37976 4.43714 4.55519 4.57338 4.64451 4.76569 4.79324 4.82972 4.88566 5.02971 5.04678 5.14472 5.17254 5.25979 5.32756 5.42701 5.44107 5.52262 5.58356 5.61055 5.65326 5.65611 5.81412 5.97369 6.32943 6.58332 7.18385 7.93165 8.34786 9.21660 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.004160 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.891849 B = 6728.933053 C = 6906.043371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.595 5.595 3 C -0.263 4.263 4 H 0.064 0.936 5 C -0.048 4.048 6 N -0.929 5.929 7 Si 0.957 3.043 8 H -0.289 1.289 9 H -0.275 1.275 10 H -0.292 1.292 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.166 4.166 14 C 0.081 3.919 15 H 0.100 0.900 16 O -0.304 6.304 17 C 0.109 3.891 18 C -0.223 4.223 19 C -0.085 4.085 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.174 4.174 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.107 4.107 26 H 0.012 0.988 27 H 0.037 0.963 28 H 0.019 0.981 29 H 0.247 0.753 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -20.377 -2.032 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.315 5.315 3 C -0.393 4.393 4 H 0.082 0.918 5 C -0.243 4.243 6 N -0.576 5.576 7 Si 0.786 3.214 8 H -0.216 1.216 9 H -0.200 1.200 10 H -0.219 1.219 11 C 0.055 3.945 12 H 0.084 0.916 13 C -0.205 4.205 14 C 0.024 3.976 15 H 0.118 0.882 16 O -0.218 6.218 17 C 0.064 3.936 18 C -0.241 4.241 19 C -0.103 4.103 20 C -0.183 4.183 21 C -0.101 4.101 22 C -0.193 4.193 23 C -0.105 4.105 24 C -0.177 4.177 25 C -0.164 4.164 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.102 -20.068 -1.983 20.403 hybrid contribution 0.080 1.544 -0.079 1.548 sum 3.182 -18.525 -2.062 18.909 Atomic orbital electron populations 1.20875 0.82468 0.95998 0.98317 1.44043 1.02091 1.00889 1.84469 1.19492 0.95029 0.85840 1.38951 0.91808 1.25447 0.98674 1.00623 0.99580 1.70259 1.20521 1.26512 1.40323 0.85411 0.77160 0.80655 0.78165 1.21596 1.20037 1.21859 1.21971 0.94682 0.83954 0.93877 0.91554 1.23981 1.02067 0.96376 0.98066 1.23302 0.83877 0.93470 0.96972 0.88216 1.86059 1.31476 1.21153 1.83108 1.19451 0.95269 0.83127 0.95711 1.21507 0.97337 0.97079 1.08181 1.21299 0.99615 0.93129 0.96254 1.21424 0.92017 1.01430 1.03467 1.21291 0.99845 0.92583 0.96331 1.20699 0.96017 0.95651 1.06907 1.22871 0.96876 0.94227 0.96555 1.21442 0.97251 1.00306 0.98679 1.21516 0.94709 1.01102 0.99111 0.96946 0.94520 0.96255 0.94381 0.87877 0.91346 0.84904 0.83633 0.83357 0.82985 0.85310 0.94615 0.92313 0.92212 0.92168 0.92142 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.03 6.83 127.77 0.87 8.90 16 2 N -0.59 -29.61 2.76 -699.85 -1.93 -31.55 16 3 C -0.26 -14.69 9.70 84.04 0.82 -13.88 16 4 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 5 C -0.05 -2.71 4.94 84.86 0.42 -2.29 16 6 N -0.93 -54.54 10.78 21.65 0.23 -54.31 16 7 Si 0.96 45.82 29.60 68.60 2.03 47.85 16 8 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 C 0.16 6.79 3.82 45.51 0.17 6.97 16 12 H 0.07 2.95 8.01 -2.39 -0.02 2.93 16 13 C -0.17 -5.60 7.00 31.17 0.22 -5.38 16 14 C 0.08 2.46 3.21 31.18 0.10 2.56 16 15 H 0.10 2.64 5.84 -2.39 -0.01 2.63 16 16 O -0.30 -9.54 8.60 -92.42 -0.80 -10.34 16 17 C 0.11 2.97 6.68 22.51 0.15 3.13 16 18 C -0.22 -5.21 9.02 22.37 0.20 -5.01 16 19 C -0.09 -1.58 10.04 22.26 0.22 -1.36 16 20 C -0.17 -2.75 10.04 22.28 0.22 -2.53 16 21 C -0.08 -1.50 10.04 22.25 0.22 -1.27 16 22 C -0.17 -4.12 9.99 22.37 0.22 -3.90 16 23 C -0.10 -3.65 1.35 -51.66 -0.07 -3.72 16 24 C -0.12 -4.19 9.04 71.98 0.65 -3.54 16 25 C -0.11 -3.85 7.20 71.98 0.52 -3.33 16 26 H 0.01 0.64 6.93 -2.39 -0.02 0.62 16 27 H 0.04 1.48 5.00 -2.39 -0.01 1.47 16 28 H 0.02 0.98 5.46 -2.39 -0.01 0.97 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.36 16 30 H 0.10 3.35 5.13 -2.39 -0.01 3.34 16 31 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 32 H 0.13 2.92 5.88 -2.91 -0.02 2.91 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.06 2.03 6.96 -2.39 -0.02 2.02 16 40 H 0.06 2.02 5.95 -2.39 -0.01 2.00 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 2.09 6.55 -2.38 -0.02 2.07 16 Total: -1.00 -63.59 324.70 5.49 -58.10 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.01 Total: 14.88 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 4.95 Total: -24.64 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.70 Total: -85.85 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.80 Total: -10.34 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -63.59 5.49 -58.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287481883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.511 kcal (2) G-P(sol) polarization free energy of solvation -63.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds