Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00035 * 2 1 4 4 C 1.50697 * 119.99912 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47500 * 95.00112 * 4 2 1 6 6 N 1.46498 * 109.47584 * 179.97438 * 5 4 2 7 7 C 1.39664 * 120.00039 * 179.97438 * 6 5 4 8 8 C 1.38973 * 120.04703 * 359.97438 * 7 6 5 9 9 C 1.38116 * 120.03003 * 180.02562 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 H 1.08006 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00333 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47004 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47148 * 299.99845 * 3 2 1 28 28 H 1.09000 * 109.46845 * 60.00437 * 3 2 1 29 29 H 1.08997 * 109.47135 * 334.99845 * 4 2 1 30 30 H 1.09008 * 109.47310 * 214.99819 * 4 2 1 31 31 H 1.09006 * 109.47286 * 59.99607 * 5 4 2 32 32 H 1.09008 * 109.46600 * 300.00142 * 5 4 2 33 33 H 0.97000 * 119.99514 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.98339 * 0.02562 * 8 7 6 35 35 H 1.08007 * 119.92769 * 179.97438 * 9 8 7 36 36 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 7 3.1604 -2.9517 -1.4383 7 6 3.6005 -3.5035 -2.6435 8 6 3.3431 -2.8503 -3.8428 9 6 3.7780 -3.3965 -5.0345 10 6 4.4744 -4.5904 -5.0374 11 6 4.7296 -5.2498 -3.8433 12 8 5.4103 -6.4260 -3.8483 13 6 5.8278 -6.9286 -5.1192 14 6 6.5724 -8.2510 -4.9251 15 6 7.0133 -8.7807 -6.2652 16 1 6.7855 -8.2291 -7.1654 17 6 7.7082 -9.9690 -6.3421 18 7 7.9860 -10.6405 -5.2459 19 14 8.2541 -10.6260 -8.0034 20 1 9.1551 -9.6407 -8.6535 21 1 8.9780 -11.9088 -7.8149 22 1 7.0638 -10.8503 -8.8624 23 6 4.2949 -4.7051 -2.6451 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 3.1352 1.1059 -0.0005 27 1 1.8002 1.8767 -0.8900 28 1 1.8002 1.8766 0.8900 29 1 1.4385 -2.0856 0.4334 30 1 2.9742 -1.1991 0.5889 31 1 3.0523 -0.9028 -1.8718 32 1 1.5166 -1.7893 -2.0272 33 1 3.3400 -3.4084 -0.6015 34 1 2.8028 -1.9152 -3.8430 35 1 3.5767 -2.8876 -5.9657 36 1 4.8169 -5.0127 -5.9705 37 1 4.9540 -7.0931 -5.7497 38 1 6.4892 -6.2055 -5.5964 39 1 7.4461 -8.0868 -4.2944 40 1 5.9107 -8.9740 -4.4480 41 1 8.4753 -11.4763 -5.3000 42 1 4.4960 -5.2151 -1.7145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288746820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -15.530657 kcal Electronic energy + Delta-G solvation = -19663.940230 eV Core-core repulsion = 16608.793001 eV Total energy + Delta-G solvation = -3055.147228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73910 -38.09273 -36.87527 -34.69289 -33.31212 -31.03088 -30.44906 -29.03486 -27.83796 -27.47677 -25.01521 -23.70168 -22.46434 -21.30912 -20.31191 -18.89018 -17.83732 -16.36748 -16.19446 -15.73569 -15.56720 -15.39864 -15.21117 -14.89069 -14.55665 -14.14363 -13.88459 -13.66540 -13.34368 -12.74628 -12.65850 -12.34498 -12.25248 -12.14155 -11.87649 -11.60396 -11.36705 -11.28247 -11.14848 -10.85482 -10.74647 -10.40974 -9.96510 -9.68977 -9.61401 -9.45985 -9.27387 -8.41921 -7.91412 -7.31007 -6.07290 -4.11709 1.74561 1.76919 1.90376 3.26024 3.30927 3.35179 3.37480 4.03297 4.15313 4.42905 4.44832 4.50786 4.69531 4.87755 5.10895 5.13882 5.17612 5.25282 5.28904 5.40070 5.49733 5.53436 5.57528 5.59126 5.59895 5.68154 5.81127 6.11343 6.12428 6.14812 6.20051 6.42855 6.43733 6.65508 6.70059 6.78238 6.92127 7.40071 7.55066 7.68514 7.68953 7.86733 8.15058 8.28097 8.93743 9.52240 11.04265 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.055653 B = 0.002332 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.999987 B =12003.673296 C =12312.273088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.098 4.098 5 C 0.135 3.865 6 N -0.751 5.751 7 C 0.246 3.754 8 C -0.244 4.244 9 C -0.037 4.037 10 C -0.264 4.264 11 C 0.187 3.813 12 O -0.316 6.316 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.238 4.238 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 21.923 9.366 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.123 4.123 3 C -0.179 4.179 4 C -0.136 4.136 5 C 0.011 3.989 6 N -0.382 5.382 7 C 0.143 3.857 8 C -0.267 4.267 9 C -0.056 4.056 10 C -0.285 4.285 11 C 0.139 3.861 12 O -0.229 6.229 13 C -0.008 4.008 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.261 4.261 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.130 21.794 9.548 27.177 hybrid contribution 0.339 -0.539 -0.789 1.014 sum -12.791 21.255 8.759 26.308 Atomic orbital electron populations 1.23726 0.95273 1.02078 1.01918 1.21585 0.95303 0.95298 1.00117 1.20881 1.00237 0.94594 1.02141 1.20882 1.00708 0.95175 0.96787 1.21197 0.95879 0.85753 0.96120 1.44561 1.63027 1.24597 1.06014 1.17347 0.91334 0.90948 0.86044 1.20389 1.11829 1.03125 0.91313 1.20621 0.93976 0.93925 0.97074 1.21150 1.09928 0.99667 0.97708 1.18820 0.88869 0.85269 0.93115 1.86144 1.67831 1.33570 1.35367 1.23313 0.97897 0.98075 0.81498 1.19123 0.95419 0.88658 0.98017 1.20944 1.36533 1.06678 0.92254 0.92396 1.24996 0.95763 0.96626 0.96865 1.69972 1.39827 1.15701 1.27317 0.86539 0.78845 0.78187 0.83748 1.20108 1.21150 1.20101 1.19668 1.10887 0.98429 0.97155 0.88336 0.88335 0.91796 0.91425 0.91520 0.90664 0.90521 0.92265 0.92299 0.76733 0.86741 0.86363 0.85573 0.93094 0.93089 0.95441 0.95435 0.92690 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 13.93 29.02 0.40 -0.79 16 2 C -0.12 -0.79 5.31 -101.07 -0.54 -1.32 16 3 C -0.12 -0.66 10.05 36.01 0.36 -0.30 16 4 C -0.10 -0.65 5.41 -27.88 -0.15 -0.80 16 5 C 0.13 1.13 4.89 -4.04 -0.02 1.11 16 6 N -0.75 -7.83 5.73 -58.65 -0.34 -8.17 16 7 C 0.25 3.38 6.65 -83.81 -0.56 2.82 16 8 C -0.24 -3.26 9.31 -39.35 -0.37 -3.62 16 9 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 10 C -0.26 -4.41 9.04 -39.39 -0.36 -4.76 16 11 C 0.19 3.46 6.68 -39.24 -0.26 3.20 16 12 O -0.32 -6.79 10.13 -19.42 -0.20 -6.99 16 13 C 0.07 1.47 4.68 37.16 0.17 1.64 16 14 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 15 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.24 -3.84 9.83 -39.24 -0.39 -4.22 16 24 H 0.10 0.52 8.05 -52.48 -0.42 0.10 16 25 H 0.10 0.59 7.99 -52.49 -0.42 0.17 16 26 H 0.06 0.34 8.00 -51.93 -0.42 -0.07 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 32 H 0.06 0.52 7.95 -51.92 -0.41 0.10 16 33 H 0.40 3.61 8.48 -40.82 -0.35 3.26 16 34 H 0.11 1.28 6.73 -52.49 -0.35 0.93 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 37 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 38 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -30.89 353.35 -8.97 -39.86 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.82 Total: 0.55 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.65 Total: -21.03 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.40 Total: -34.18 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.89 -8.97 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288746820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.328 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds