Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00035 * 2 1 4 4 C 1.50697 * 119.99912 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47500 * 95.00112 * 4 2 1 6 6 N 1.46498 * 109.47584 * 179.97438 * 5 4 2 7 7 C 1.39664 * 120.00039 * 179.97438 * 6 5 4 8 8 C 1.38973 * 120.04703 * 359.97438 * 7 6 5 9 9 C 1.38116 * 120.03003 * 180.02562 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 H 1.08006 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00333 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47004 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47148 * 299.99845 * 3 2 1 28 28 H 1.09000 * 109.46845 * 60.00437 * 3 2 1 29 29 H 1.08997 * 109.47135 * 334.99845 * 4 2 1 30 30 H 1.09008 * 109.47310 * 214.99819 * 4 2 1 31 31 H 1.09006 * 109.47286 * 59.99607 * 5 4 2 32 32 H 1.09008 * 109.46600 * 300.00142 * 5 4 2 33 33 H 0.97000 * 119.99514 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.98339 * 0.02562 * 8 7 6 35 35 H 1.08007 * 119.92769 * 179.97438 * 9 8 7 36 36 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 7 3.1604 -2.9517 -1.4383 7 6 3.6005 -3.5035 -2.6435 8 6 3.3431 -2.8503 -3.8428 9 6 3.7780 -3.3965 -5.0345 10 6 4.4744 -4.5904 -5.0374 11 6 4.7296 -5.2498 -3.8433 12 8 5.4103 -6.4260 -3.8483 13 6 5.8278 -6.9286 -5.1192 14 6 6.5724 -8.2510 -4.9251 15 6 7.0133 -8.7807 -6.2652 16 1 6.7855 -8.2291 -7.1654 17 6 7.7082 -9.9690 -6.3421 18 7 7.9860 -10.6405 -5.2459 19 14 8.2541 -10.6260 -8.0034 20 1 9.1551 -9.6407 -8.6535 21 1 8.9780 -11.9088 -7.8149 22 1 7.0638 -10.8503 -8.8624 23 6 4.2949 -4.7051 -2.6451 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 3.1352 1.1059 -0.0005 27 1 1.8002 1.8767 -0.8900 28 1 1.8002 1.8766 0.8900 29 1 1.4385 -2.0856 0.4334 30 1 2.9742 -1.1991 0.5889 31 1 3.0523 -0.9028 -1.8718 32 1 1.5166 -1.7893 -2.0272 33 1 3.3400 -3.4084 -0.6015 34 1 2.8028 -1.9152 -3.8430 35 1 3.5767 -2.8876 -5.9657 36 1 4.8169 -5.0127 -5.9705 37 1 4.9540 -7.0931 -5.7497 38 1 6.4892 -6.2055 -5.5964 39 1 7.4461 -8.0868 -4.2944 40 1 5.9107 -8.9740 -4.4480 41 1 8.4753 -11.4763 -5.3000 42 1 4.4960 -5.2151 -1.7145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288746820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -32.508861 kcal Electronic energy + Delta-G solvation = -19664.676460 eV Core-core repulsion = 16608.793001 eV Total energy + Delta-G solvation = -3055.883459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03022 -39.23439 -37.69249 -35.71603 -35.30581 -32.57451 -31.68731 -30.38642 -28.64941 -28.04241 -26.94870 -24.57759 -23.86865 -22.76003 -21.72910 -19.60835 -19.05522 -18.25573 -17.31762 -16.91170 -16.76121 -16.58788 -16.51613 -16.28015 -15.73195 -15.08061 -14.61404 -14.48539 -14.31790 -14.24370 -14.13773 -13.96004 -13.20645 -13.19732 -12.96590 -12.69824 -12.58646 -12.53489 -12.40526 -12.17054 -11.96687 -11.85713 -11.60243 -11.55680 -11.38417 -10.83852 -10.60671 -9.93144 -9.22090 -8.35859 -8.25769 -6.39576 0.56764 0.69066 1.28871 1.41337 1.45705 1.53640 2.18570 2.41428 2.75797 2.96077 3.08274 3.94428 3.96880 4.02010 4.08445 4.26582 4.29252 4.29566 4.34601 4.36164 4.53346 4.60228 4.68513 4.70459 4.75460 4.83873 4.95218 4.98584 5.08334 5.11993 5.17172 5.29262 5.33605 5.47740 5.52231 5.63501 5.66944 5.74301 5.76773 5.96401 6.07875 6.39220 6.62069 6.74895 6.80617 7.30279 8.87169 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.055653 B = 0.002332 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.999987 B =12003.673296 C =12312.273088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.092 4.092 5 C 0.134 3.866 6 N -0.742 5.742 7 C 0.251 3.749 8 C -0.238 4.238 9 C -0.032 4.032 10 C -0.281 4.281 11 C 0.152 3.848 12 O -0.342 6.342 13 C 0.086 3.914 14 C 0.028 3.972 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.253 4.253 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.060 0.940 39 H -0.002 1.002 40 H -0.002 1.002 41 H 0.267 0.733 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 24.088 8.362 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.131 4.131 3 C -0.179 4.179 4 C -0.129 4.129 5 C 0.011 3.989 6 N -0.372 5.372 7 C 0.146 3.854 8 C -0.261 4.261 9 C -0.050 4.050 10 C -0.302 4.302 11 C 0.105 3.895 12 O -0.256 6.256 13 C 0.012 3.988 14 C -0.009 4.009 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.276 4.276 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.240 0.760 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.076 0.924 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.243 24.001 8.579 29.198 hybrid contribution 0.566 -1.068 -0.326 1.252 sum -13.677 22.932 8.252 27.947 Atomic orbital electron populations 1.23858 0.95360 1.02543 1.01456 1.21668 0.95459 0.95472 1.00518 1.20900 1.00102 0.94244 1.02639 1.20821 1.01010 0.95451 0.95668 1.21329 0.95596 0.84581 0.97413 1.44703 1.62118 1.25081 1.05288 1.17435 0.90324 0.90043 0.87575 1.20754 1.10867 1.03733 0.90697 1.20969 0.92491 0.92778 0.98806 1.21232 1.11232 1.00937 0.96807 1.19154 0.90515 0.84902 0.94892 1.86053 1.69297 1.35676 1.34596 1.22847 0.97823 0.95945 0.82215 1.18970 0.94190 0.90632 0.97121 1.21370 1.36758 1.07285 0.93023 0.91101 1.26071 0.95591 0.96847 1.01332 1.70123 1.40584 1.16236 1.30070 0.85313 0.78769 0.77542 0.78294 1.18819 1.20740 1.18819 1.19789 1.11778 0.99591 0.96474 0.87524 0.88353 0.91807 0.91011 0.90970 0.90512 0.90092 0.91818 0.92162 0.75982 0.83915 0.83231 0.85962 0.92251 0.92226 0.98368 0.98369 0.92448 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 13.93 67.78 0.94 -1.08 16 2 C -0.13 -1.39 5.31 -16.48 -0.09 -1.48 16 3 C -0.12 -1.07 10.05 71.24 0.72 -0.35 16 4 C -0.09 -1.01 5.41 29.85 0.16 -0.85 16 5 C 0.13 1.88 4.89 86.38 0.42 2.31 16 6 N -0.74 -13.97 5.73 -339.46 -1.95 -15.92 16 7 C 0.25 6.50 6.65 38.20 0.25 6.75 16 8 C -0.24 -5.68 9.31 22.42 0.21 -5.47 16 9 C -0.03 -0.82 10.03 22.24 0.22 -0.60 16 10 C -0.28 -9.27 9.04 22.39 0.20 -9.07 16 11 C 0.15 5.72 6.68 22.49 0.15 5.87 16 12 O -0.34 -15.39 10.13 -92.39 -0.94 -16.32 16 13 C 0.09 3.95 4.68 71.98 0.34 4.29 16 14 C 0.03 1.58 5.34 29.85 0.16 1.74 16 15 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 16 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 17 C 0.00 0.00 5.46 84.65 0.46 0.47 16 18 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 19 Si 0.98 44.04 29.54 68.60 2.03 46.07 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 C -0.25 -8.18 9.83 22.49 0.22 -7.96 16 24 H 0.11 0.91 8.05 -2.91 -0.02 0.89 16 25 H 0.10 1.00 7.99 -2.91 -0.02 0.98 16 26 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.83 7.99 -2.39 -0.02 0.81 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.88 7.95 -2.38 -0.02 0.86 16 32 H 0.06 0.87 7.95 -2.38 -0.02 0.85 16 33 H 0.40 6.68 8.48 -92.71 -0.79 5.89 16 34 H 0.14 2.60 6.73 -2.91 -0.02 2.58 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.12 4.02 6.29 -2.91 -0.02 4.00 16 37 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 38 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 42 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -68.00 353.35 4.24 -63.76 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.20 Total: 16.26 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 4.61 Total: -36.70 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.66 Total: -73.07 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.94 Total: -16.32 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.00 4.24 -63.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288746820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.253 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds