Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.16566 * 2 1 4 4 C 1.51335 * 109.21281 * 240.65958 * 2 1 3 5 5 N 1.46055 * 113.61607 * 304.98847 * 4 2 1 6 6 C 1.46903 * 110.99981 * 166.34306 * 5 4 2 7 7 C 1.52998 * 109.47094 * 189.99823 * 6 5 4 8 8 C 1.50706 * 109.47336 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99857 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00332 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99637 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46883 * 60.00016 * 12 10 8 14 14 H 1.48499 * 109.46952 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47286 * 300.00366 * 12 10 8 16 16 C 1.47717 * 112.39295 * 291.26935 * 5 4 2 17 17 C 1.51588 * 108.44860 * 84.32130 * 16 5 4 18 18 C 1.38010 * 120.11920 * 112.01977 * 17 16 5 19 19 C 1.38387 * 119.67404 * 178.01592 * 18 17 16 20 20 C 1.38294 * 120.13188 * 0.02562 * 19 18 17 21 21 C 1.38208 * 120.19525 * 0.42360 * 20 19 18 22 22 C 1.38177 * 119.50320 * 291.16182 * 17 16 5 23 23 O 1.36171 * 119.80131 * 3.58135 * 22 17 16 24 24 H 1.08994 * 109.47429 * 300.66485 * 1 2 3 25 25 H 1.09002 * 109.46770 * 60.66628 * 1 2 3 26 26 H 1.09004 * 109.46941 * 180.66107 * 1 2 3 27 27 H 1.09003 * 109.47563 * 179.33502 * 3 2 1 28 28 H 1.09004 * 109.47242 * 299.33416 * 3 2 1 29 29 H 1.09003 * 109.47604 * 59.33213 * 3 2 1 30 30 H 1.09004 * 108.65586 * 66.05800 * 4 2 1 31 31 H 1.08994 * 108.65981 * 184.05316 * 4 2 1 32 32 H 1.08997 * 109.47732 * 310.00218 * 6 5 4 33 33 H 1.09006 * 109.46961 * 70.00111 * 6 5 4 34 34 H 1.08999 * 109.47577 * 300.00434 * 7 6 5 35 35 H 1.09004 * 109.47465 * 60.00504 * 7 6 5 36 36 H 0.96998 * 119.99884 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.01052 * 324.48212 * 16 5 4 38 38 H 1.09000 * 109.49804 * 203.85440 * 16 5 4 39 39 H 1.07991 * 120.16174 * 358.03763 * 18 17 16 40 40 H 1.07991 * 119.93288 * 180.02562 * 19 18 17 41 41 H 1.08004 * 119.89938 * 180.43664 * 20 19 18 42 42 H 1.08002 * 120.17305 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4452 0.0000 4 6 2.0280 -0.7002 -1.2457 5 7 1.4959 -2.0504 -1.4103 6 6 1.7446 -2.5524 -2.7684 7 6 0.9653 -3.8515 -2.9825 8 6 1.2208 -4.3668 -4.3755 9 1 1.8740 -3.8223 -5.0412 10 6 0.6215 -5.5339 -4.7995 11 7 -0.1735 -6.1971 -3.9886 12 14 0.9388 -6.1729 -6.5259 13 1 2.3909 -6.4319 -6.6987 14 1 0.1824 -7.4338 -6.7337 15 1 0.4951 -5.1608 -7.5177 16 6 2.0187 -2.9888 -0.3963 17 6 1.1724 -2.8631 0.8551 18 6 0.3580 -3.9058 1.2479 19 6 -0.3793 -3.7974 2.4139 20 6 -0.3004 -2.6494 3.1810 21 6 0.5080 -1.6015 2.7829 22 6 1.2369 -1.7055 1.6068 23 8 2.0013 -0.6628 1.1795 24 1 -0.3634 0.5241 0.8839 25 1 -0.3633 0.5035 -0.8959 26 1 -0.3633 -1.0276 0.0119 27 1 3.1222 1.4511 0.0119 28 1 1.6760 1.9537 -0.8959 29 1 1.6565 1.9605 0.8839 30 1 1.7470 -0.1063 -2.1155 31 1 3.1155 -0.7591 -1.2016 32 1 1.4186 -1.8091 -3.4959 33 1 2.8103 -2.7427 -2.8959 34 1 1.2913 -4.5949 -2.2550 35 1 -0.1004 -3.6613 -2.8550 36 1 -0.5948 -7.0183 -4.2868 37 1 3.0552 -2.7457 -0.1623 38 1 1.9576 -4.0080 -0.7779 39 1 0.2967 -4.8020 0.6485 40 1 -1.0176 -4.6109 2.7255 41 1 -0.8721 -2.5716 4.0941 42 1 0.5691 -0.7050 3.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289002352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -11.281776 kcal Electronic energy + Delta-G solvation = -22096.953698 eV Core-core repulsion = 19041.990715 eV Total energy + Delta-G solvation = -3054.962983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65972 -37.74973 -36.62002 -33.64235 -32.95886 -31.37683 -29.83133 -29.19917 -27.24166 -26.27905 -25.37493 -23.14564 -22.36621 -21.17268 -20.05156 -19.62669 -17.15679 -16.61066 -15.91825 -15.73020 -15.34805 -14.84481 -14.60182 -14.32947 -14.05253 -13.74013 -13.32799 -13.11106 -12.64075 -12.47056 -12.36561 -12.05604 -11.90452 -11.76694 -11.68216 -11.45148 -11.22459 -11.07390 -10.91172 -10.77181 -10.59006 -10.53615 -9.92251 -9.80634 -9.34209 -9.15456 -8.60907 -8.34825 -8.23037 -7.73641 -6.01574 -4.04048 1.43348 1.57267 3.32138 3.36800 3.38898 3.54333 4.02467 4.39406 4.53920 4.91584 5.04163 5.09608 5.10366 5.11856 5.24336 5.34421 5.46926 5.52604 5.59489 5.63581 5.69002 5.75697 5.84326 5.88056 6.00080 6.09113 6.12841 6.19672 6.24310 6.29735 6.42759 6.47087 6.57129 6.70175 6.86274 6.90932 6.98224 7.42737 7.52015 7.73185 7.77733 7.85820 8.05872 8.40521 9.02567 9.59665 11.09639 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.005131 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.439848 B = 5455.592419 C = 6465.710718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 C -0.139 4.139 4 C 0.041 3.959 5 N -0.539 5.539 6 C 0.067 3.933 7 C 0.029 3.971 8 C -0.524 4.524 9 H 0.053 0.947 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.090 3.910 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.140 4.140 22 C 0.111 3.889 23 O -0.328 6.328 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 11.096 12.440 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.082 3.918 3 C -0.196 4.196 4 C -0.088 4.088 5 N -0.262 5.262 6 C -0.060 4.060 7 C -0.008 4.008 8 C -0.562 4.562 9 H 0.071 0.929 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.038 4.038 17 C -0.094 4.094 18 C -0.106 4.106 19 C -0.150 4.150 20 C -0.132 4.132 21 C -0.158 4.158 22 C 0.067 3.933 23 O -0.246 6.246 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.104 11.053 12.553 16.762 hybrid contribution 0.823 -0.530 -1.203 1.551 sum 1.927 10.524 11.350 15.597 Atomic orbital electron populations 1.22376 0.94201 1.04301 1.01695 1.21529 0.94697 0.91703 0.83844 1.21813 1.01971 0.93202 1.02646 1.22084 0.97338 0.91798 0.97549 1.61440 1.59775 1.00463 1.04560 1.22345 0.98192 0.99759 0.85657 1.19123 0.95899 0.89614 0.96170 1.21138 1.28382 1.07883 0.98835 0.92862 1.24971 0.95094 0.96758 0.97326 1.69951 1.30678 1.16822 1.35679 0.86668 0.78280 0.78192 0.84906 1.20297 1.21262 1.20247 1.21459 0.94426 0.98890 0.88984 1.20341 0.98391 0.93862 0.96775 1.21089 0.94931 0.98644 0.95951 1.21159 1.00299 0.98096 0.95420 1.20936 0.98959 0.93521 0.99817 1.21102 0.96904 0.99821 0.98022 1.18346 0.93461 0.87479 0.94044 1.86307 1.49277 1.44459 1.44536 0.92864 0.91537 0.90099 0.91864 0.90764 0.91692 0.90169 0.95019 0.91919 0.96112 0.96421 0.95663 0.92927 0.93577 0.88401 0.85101 0.86045 0.86148 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 7.52 37.16 0.28 -2.07 16 2 C 0.12 1.67 1.08 -91.46 -0.10 1.57 16 3 C -0.14 -1.50 8.77 37.16 0.33 -1.17 16 4 C 0.04 0.64 3.92 -5.12 -0.02 0.62 16 5 N -0.54 -9.90 3.69 -236.59 -0.87 -10.78 16 6 C 0.07 1.39 4.89 -3.82 -0.02 1.37 16 7 C 0.03 0.74 4.93 -27.88 -0.14 0.61 16 8 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 9 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 12 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.09 1.62 5.11 -4.09 -0.02 1.60 16 17 C -0.09 -1.55 4.62 -104.29 -0.48 -2.03 16 18 C -0.09 -1.39 9.70 -39.61 -0.38 -1.77 16 19 C -0.13 -1.77 10.05 -39.51 -0.40 -2.17 16 20 C -0.11 -1.42 10.04 -39.57 -0.40 -1.82 16 21 C -0.14 -1.90 9.96 -39.40 -0.39 -2.29 16 22 C 0.11 1.74 4.02 -39.41 -0.16 1.58 16 23 O -0.33 -5.15 9.64 -20.28 -0.20 -5.34 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.35 5.96 -51.93 -0.31 1.04 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.16 7.75 -51.93 -0.40 0.76 16 31 H 0.03 0.50 7.91 -51.93 -0.41 0.09 16 32 H 0.06 1.28 7.84 -51.93 -0.41 0.88 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.47 6.16 -51.93 -0.32 0.15 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 38 H 0.10 1.92 5.51 -51.93 -0.29 1.63 16 39 H 0.13 2.11 7.99 -52.49 -0.42 1.69 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -30.00 330.75 -9.41 -39.40 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.73 Total: 0.30 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.31 Total: -19.31 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.14 Total: -36.48 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.00 -9.41 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289002352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.122 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds