Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.16566 * 2 1 4 4 C 1.51335 * 109.21281 * 240.65958 * 2 1 3 5 5 N 1.46055 * 113.61607 * 304.98847 * 4 2 1 6 6 C 1.46903 * 110.99981 * 166.34306 * 5 4 2 7 7 C 1.52998 * 109.47094 * 189.99823 * 6 5 4 8 8 C 1.50706 * 109.47336 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99857 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00332 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99637 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46883 * 60.00016 * 12 10 8 14 14 H 1.48499 * 109.46952 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47286 * 300.00366 * 12 10 8 16 16 C 1.47717 * 112.39295 * 291.26935 * 5 4 2 17 17 C 1.51588 * 108.44860 * 84.32130 * 16 5 4 18 18 C 1.38010 * 120.11920 * 112.01977 * 17 16 5 19 19 C 1.38387 * 119.67404 * 178.01592 * 18 17 16 20 20 C 1.38294 * 120.13188 * 0.02562 * 19 18 17 21 21 C 1.38208 * 120.19525 * 0.42360 * 20 19 18 22 22 C 1.38177 * 119.50320 * 291.16182 * 17 16 5 23 23 O 1.36171 * 119.80131 * 3.58135 * 22 17 16 24 24 H 1.08994 * 109.47429 * 300.66485 * 1 2 3 25 25 H 1.09002 * 109.46770 * 60.66628 * 1 2 3 26 26 H 1.09004 * 109.46941 * 180.66107 * 1 2 3 27 27 H 1.09003 * 109.47563 * 179.33502 * 3 2 1 28 28 H 1.09004 * 109.47242 * 299.33416 * 3 2 1 29 29 H 1.09003 * 109.47604 * 59.33213 * 3 2 1 30 30 H 1.09004 * 108.65586 * 66.05800 * 4 2 1 31 31 H 1.08994 * 108.65981 * 184.05316 * 4 2 1 32 32 H 1.08997 * 109.47732 * 310.00218 * 6 5 4 33 33 H 1.09006 * 109.46961 * 70.00111 * 6 5 4 34 34 H 1.08999 * 109.47577 * 300.00434 * 7 6 5 35 35 H 1.09004 * 109.47465 * 60.00504 * 7 6 5 36 36 H 0.96998 * 119.99884 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.01052 * 324.48212 * 16 5 4 38 38 H 1.09000 * 109.49804 * 203.85440 * 16 5 4 39 39 H 1.07991 * 120.16174 * 358.03763 * 18 17 16 40 40 H 1.07991 * 119.93288 * 180.02562 * 19 18 17 41 41 H 1.08004 * 119.89938 * 180.43664 * 20 19 18 42 42 H 1.08002 * 120.17305 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4452 0.0000 4 6 2.0280 -0.7002 -1.2457 5 7 1.4959 -2.0504 -1.4103 6 6 1.7446 -2.5524 -2.7684 7 6 0.9653 -3.8515 -2.9825 8 6 1.2208 -4.3668 -4.3755 9 1 1.8740 -3.8223 -5.0412 10 6 0.6215 -5.5339 -4.7995 11 7 -0.1735 -6.1971 -3.9886 12 14 0.9388 -6.1729 -6.5259 13 1 2.3909 -6.4319 -6.6987 14 1 0.1824 -7.4338 -6.7337 15 1 0.4951 -5.1608 -7.5177 16 6 2.0187 -2.9888 -0.3963 17 6 1.1724 -2.8631 0.8551 18 6 0.3580 -3.9058 1.2479 19 6 -0.3793 -3.7974 2.4139 20 6 -0.3004 -2.6494 3.1810 21 6 0.5080 -1.6015 2.7829 22 6 1.2369 -1.7055 1.6068 23 8 2.0013 -0.6628 1.1795 24 1 -0.3634 0.5241 0.8839 25 1 -0.3633 0.5035 -0.8959 26 1 -0.3633 -1.0276 0.0119 27 1 3.1222 1.4511 0.0119 28 1 1.6760 1.9537 -0.8959 29 1 1.6565 1.9605 0.8839 30 1 1.7470 -0.1063 -2.1155 31 1 3.1155 -0.7591 -1.2016 32 1 1.4186 -1.8091 -3.4959 33 1 2.8103 -2.7427 -2.8959 34 1 1.2913 -4.5949 -2.2550 35 1 -0.1004 -3.6613 -2.8550 36 1 -0.5948 -7.0183 -4.2868 37 1 3.0552 -2.7457 -0.1623 38 1 1.9576 -4.0080 -0.7779 39 1 0.2967 -4.8020 0.6485 40 1 -1.0176 -4.6109 2.7255 41 1 -0.8721 -2.5716 4.0941 42 1 0.5691 -0.7050 3.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289002352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -28.166481 kcal Electronic energy + Delta-G solvation = -22097.685874 eV Core-core repulsion = 19041.990715 eV Total energy + Delta-G solvation = -3055.695159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84722 -38.89635 -38.08728 -35.28139 -34.51240 -32.77655 -31.36226 -30.57257 -28.23817 -27.58017 -27.12456 -24.74989 -23.52617 -22.64231 -21.52326 -20.90557 -18.66813 -18.27175 -17.27327 -16.97239 -16.60373 -16.47498 -16.06337 -15.73033 -15.51883 -14.94065 -14.79609 -14.43989 -14.21142 -13.78417 -13.49232 -13.40836 -13.12025 -12.99236 -12.89633 -12.84470 -12.75693 -12.63187 -12.52157 -12.31427 -12.04138 -11.79630 -11.72268 -11.36633 -11.30319 -10.83042 -10.53740 -9.76691 -9.39139 -9.21065 -8.20210 -6.31586 0.30657 0.42970 1.39775 1.42672 1.50554 2.38834 2.44376 2.79820 3.13132 3.21221 3.77775 3.85920 3.89539 3.95734 4.01152 4.17726 4.28466 4.37324 4.45395 4.46904 4.53999 4.59507 4.66876 4.73419 4.75138 4.76781 4.88256 4.96248 5.02861 5.08466 5.12029 5.21226 5.35422 5.44302 5.47195 5.57718 5.64335 5.67744 5.75570 5.88924 6.02476 6.22858 6.28461 6.58735 6.84585 7.37364 8.91536 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.005131 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.439848 B = 5455.592419 C = 6465.710718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 C -0.132 4.132 4 C 0.038 3.962 5 N -0.544 5.544 6 C 0.082 3.918 7 C 0.040 3.960 8 C -0.546 4.546 9 H 0.060 0.940 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.965 3.035 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.266 1.266 16 C 0.096 3.904 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.138 4.138 22 C 0.100 3.900 23 O -0.337 6.337 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.019 0.981 34 H -0.005 1.005 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 12.931 13.130 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 C -0.190 4.190 4 C -0.090 4.090 5 N -0.268 5.268 6 C -0.044 4.044 7 C 0.003 3.997 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.789 3.211 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.032 4.032 17 C -0.116 4.116 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.120 4.120 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.255 6.255 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.012 12.906 13.251 18.526 hybrid contribution 0.825 -1.109 -1.344 1.928 sum 1.837 11.797 11.907 16.862 Atomic orbital electron populations 1.22300 0.94178 1.02547 1.02908 1.21711 0.94768 0.93036 0.82468 1.21817 1.02167 0.90767 1.04232 1.22244 0.97227 0.90145 0.99414 1.61390 1.60399 1.01912 1.03098 1.21996 0.97101 0.97676 0.87666 1.18912 0.94306 0.91476 0.94994 1.21574 1.28583 1.08429 0.99858 0.92179 1.25922 0.94645 0.96958 1.01861 1.70098 1.31638 1.17278 1.37902 0.85514 0.78540 0.77658 0.79403 1.19271 1.20820 1.19118 1.21308 0.94855 0.97241 0.89762 1.20268 0.99442 0.95233 0.96697 1.21095 0.96315 0.98136 0.97357 1.21437 0.99694 0.99447 0.94319 1.21364 0.98050 0.92154 1.00429 1.21419 0.96018 1.01050 0.97099 1.18505 0.94105 0.87012 0.94799 1.86300 1.49871 1.44313 1.44983 0.91217 0.90700 0.93268 0.91610 0.88937 0.90357 0.88867 0.95187 0.91202 0.96236 0.98685 0.99029 0.92770 0.93801 0.91294 0.87108 0.83776 0.82257 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 7.52 71.98 0.54 -3.76 16 2 C 0.12 3.10 1.08 -11.34 -0.01 3.09 16 3 C -0.13 -2.48 8.77 71.98 0.63 -1.85 16 4 C 0.04 1.16 3.92 85.92 0.34 1.50 16 5 N -0.54 -20.76 3.69 -902.42 -3.33 -24.09 16 6 C 0.08 3.57 4.89 86.30 0.42 4.00 16 7 C 0.04 2.18 4.93 29.85 0.15 2.33 16 8 C -0.55 -31.32 9.11 25.60 0.23 -31.08 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 10 C 0.00 0.26 5.46 84.65 0.46 0.72 16 11 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 12 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 C 0.10 3.69 5.11 85.68 0.44 4.12 16 17 C -0.12 -4.03 4.62 -19.65 -0.09 -4.12 16 18 C -0.11 -3.68 9.70 22.25 0.22 -3.46 16 19 C -0.13 -3.40 10.05 22.32 0.22 -3.18 16 20 C -0.10 -2.25 10.04 22.28 0.22 -2.03 16 21 C -0.14 -3.40 9.96 22.39 0.22 -3.18 16 22 C 0.10 3.06 4.02 22.38 0.09 3.15 16 23 O -0.34 -10.17 9.64 -95.49 -0.92 -11.09 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.63 5.96 -2.39 -0.01 1.62 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 2.58 7.75 -2.38 -0.02 2.56 16 31 H 0.03 0.93 7.91 -2.39 -0.02 0.91 16 32 H 0.07 2.90 7.84 -2.39 -0.02 2.88 16 33 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 34 H -0.01 -0.29 6.16 -2.39 -0.01 -0.31 16 35 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.04 1.65 7.79 -2.39 -0.02 1.63 16 38 H 0.07 3.00 5.51 -2.39 -0.01 2.98 16 39 H 0.11 4.00 7.99 -2.92 -0.02 3.97 16 40 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -66.90 330.75 3.13 -63.78 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.98 Total: 15.33 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 4.08 Total: -33.74 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.04 Total: -80.66 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.92 Total: -11.09 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.90 3.13 -63.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289002352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.609 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds