Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 C 1.53001 * 109.47410 * 270.02155 * 7 6 5 9 9 N 1.46496 * 109.47115 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99914 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00102 * 0.02562 * 10 9 8 12 12 C 1.50696 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47410 * 179.97438 * 13 12 10 15 15 H 1.08007 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00355 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99895 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47256 * 60.00171 * 18 16 14 20 20 H 1.48501 * 109.47242 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47154 * 300.00211 * 18 16 14 22 22 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 23 23 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 29 29 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 31 31 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 32 32 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 33 33 H 1.09001 * 109.46652 * 300.00140 * 8 7 6 34 34 H 1.08996 * 109.46778 * 59.99943 * 8 7 6 35 35 H 0.97002 * 120.00440 * 0.02562 * 9 8 7 36 36 H 1.09001 * 109.47327 * 300.00168 * 12 10 9 37 37 H 1.08996 * 109.47524 * 60.00287 * 12 10 9 38 38 H 1.09001 * 109.47109 * 300.00217 * 13 12 10 39 39 H 1.09004 * 109.47086 * 59.99744 * 13 12 10 40 40 H 0.96999 * 119.99743 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.99935 * 179.97438 * 22 6 5 42 42 H 1.07999 * 119.99681 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0001 9 7 5.4748 6.8294 0.0004 10 6 6.7999 7.0758 0.0010 11 8 7.5880 6.1540 0.0007 12 6 7.3021 8.4966 0.0021 13 6 8.8321 8.4967 0.0020 14 6 9.3344 9.9174 0.0025 15 1 8.6325 10.7384 0.0033 16 6 10.6899 10.1695 0.0030 17 7 11.5446 9.1699 0.0026 18 14 11.3125 11.9307 0.0044 19 1 10.8172 12.6299 1.2172 20 1 12.7975 11.9308 0.0041 21 1 10.8177 12.6315 -1.2078 22 6 2.7238 3.3757 1.1971 23 6 2.2627 2.0726 1.1971 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5597 -2.1324 30 1 2.9047 3.8844 -2.1326 31 1 3.0932 5.9619 -0.8901 32 1 3.0932 5.9620 0.8898 33 1 5.3498 4.9344 0.8899 34 1 5.3498 4.9343 -0.8901 35 1 4.8444 7.5667 0.0011 36 1 6.9390 9.0110 -0.8876 37 1 6.9385 9.0098 0.8923 38 1 9.1955 7.9821 0.8915 39 1 9.1954 7.9835 -0.8884 40 1 12.4982 9.3473 0.0026 41 1 2.9039 3.8848 2.1323 42 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290911920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -49.502214 kcal Electronic energy + Delta-G solvation = -19589.935077 eV Core-core repulsion = 16533.314731 eV Total energy + Delta-G solvation = -3056.620346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86745 -39.01534 -35.85491 -34.14994 -33.41489 -31.64441 -31.13981 -30.77169 -28.10843 -25.75113 -24.18270 -22.96150 -22.52554 -21.37389 -20.71602 -19.54415 -16.90028 -16.35579 -16.10136 -15.76377 -15.58555 -15.15074 -15.11686 -14.40016 -14.19333 -14.02117 -13.80658 -13.43886 -13.33686 -13.11530 -12.48042 -12.29304 -12.23302 -12.05560 -11.66736 -11.66366 -11.29761 -11.15022 -11.07751 -11.02219 -10.88737 -10.60072 -9.92400 -9.63770 -9.16512 -9.12832 -9.01219 -8.74240 -8.70810 -8.29542 -5.93742 -3.98241 1.08895 1.20103 3.30467 3.35875 3.40003 3.41529 3.44544 3.66381 4.44092 4.49396 4.50589 4.74203 4.74305 4.79620 4.96916 5.00630 5.02760 5.18807 5.26308 5.34148 5.40885 5.41695 5.53870 5.60452 5.62045 5.77278 5.77854 5.88448 5.92014 6.04916 6.20542 6.26086 6.27693 6.38974 6.42802 6.74935 6.80391 6.92771 7.76487 7.89284 7.92983 8.09987 8.41255 8.82706 9.10397 9.65040 11.17179 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.061009 B = 0.002224 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.840756 B =12585.370197 C =12713.216380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.110 4.110 6 C -0.082 4.082 7 C -0.091 4.091 8 C 0.125 3.875 9 N -0.746 5.746 10 C 0.508 3.492 11 O -0.535 6.535 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.110 4.110 23 C -0.117 4.117 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.919 -14.552 -0.004 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.128 4.128 6 C -0.083 4.083 7 C -0.129 4.129 8 C 0.001 3.999 9 N -0.401 5.401 10 C 0.297 3.703 11 O -0.410 6.410 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.128 4.128 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.119 -15.281 -0.005 28.553 hybrid contribution 0.082 1.281 0.002 1.283 sum -24.037 -14.001 -0.003 27.817 Atomic orbital electron populations 1.21746 0.94761 1.01645 1.02203 1.20546 0.96138 0.92753 1.02873 1.19901 0.99337 0.96227 0.93272 1.21007 1.00100 0.94851 0.97509 1.21071 0.99265 0.94844 0.97668 1.19696 0.99502 0.95760 0.93334 1.20793 0.95127 0.93389 1.03569 1.21194 0.91926 0.84333 1.02422 1.46222 1.07911 1.07751 1.78180 1.21566 0.81005 0.93319 0.74431 1.90671 1.55194 1.47001 1.48144 1.21863 1.02562 0.90121 1.02452 1.18897 0.85851 0.96730 0.98620 1.21194 0.91721 0.92218 1.51468 0.92651 1.25033 0.97060 0.97003 0.95335 1.69992 1.02074 1.30649 1.50123 0.86642 0.77654 0.85039 0.78514 1.20269 1.21297 1.20272 1.21066 0.99241 0.94869 0.97669 1.21003 1.00087 0.94867 0.97510 0.92446 0.92575 0.92579 0.91060 0.91058 0.86187 0.85943 0.90313 0.90316 0.91784 0.91775 0.76962 0.90261 0.90260 0.95835 0.95837 0.92907 0.85944 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.09 -0.57 6.07 -27.88 -0.17 -0.73 16 3 C -0.09 -0.76 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 5 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 6 C -0.08 -0.81 5.13 -104.63 -0.54 -1.34 16 7 C -0.09 -0.83 5.46 -27.88 -0.15 -0.99 16 8 C 0.13 1.61 5.66 -4.04 -0.02 1.59 16 9 N -0.75 -10.58 5.56 -60.30 -0.33 -10.91 16 10 C 0.51 10.03 7.83 -10.99 -0.09 9.94 16 11 O -0.53 -13.06 15.98 5.56 0.09 -12.97 16 12 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.11 -1.05 9.70 -39.59 -0.38 -1.43 16 23 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 31 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.27 8.47 -40.82 -0.35 3.92 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -34.79 356.42 -9.58 -44.37 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.06 Total: -0.84 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.36 Total: -14.83 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.40 Total: -37.91 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.79 -9.58 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290911920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.137 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds