Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46807 * 2 1 4 4 C 1.52998 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47123 * 180.02562 * 4 3 2 6 6 C 1.38287 * 119.92657 * 270.31444 * 5 4 3 7 7 C 1.38118 * 120.06716 * 180.27633 * 6 5 4 8 8 C 1.38874 * 119.92887 * 359.42718 * 7 6 5 9 9 N 1.39923 * 120.06578 * 180.29339 * 8 7 6 10 10 C 1.34784 * 119.99354 * 144.91266 * 9 8 7 11 11 O 1.21283 * 119.99989 * 4.62666 * 10 9 8 12 12 C 1.50703 * 119.99893 * 184.62204 * 10 9 8 13 13 C 1.52999 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.46729 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00560 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99401 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00483 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99696 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47262 * 59.99707 * 18 16 14 20 20 H 1.48501 * 109.46925 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46934 * 299.99695 * 18 16 14 22 22 C 1.38872 * 119.85875 * 0.28010 * 8 7 6 23 23 C 1.38106 * 119.92759 * 359.97438 * 22 8 7 24 24 H 1.08998 * 109.47330 * 300.00007 * 1 2 3 25 25 H 1.09001 * 109.47656 * 59.99935 * 1 2 3 26 26 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47330 * 239.99993 * 2 1 3 28 28 H 1.08996 * 109.47223 * 119.99898 * 2 1 3 29 29 H 1.08998 * 109.47182 * 59.99902 * 3 2 1 30 30 H 1.09005 * 109.47257 * 299.99696 * 3 2 1 31 31 H 1.08998 * 109.47527 * 59.99767 * 4 3 2 32 32 H 1.09010 * 109.47029 * 299.99922 * 4 3 2 33 33 H 1.08000 * 119.96888 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.03200 * 179.69943 * 7 6 5 35 35 H 0.96992 * 120.00802 * 324.91917 * 9 8 7 36 36 H 1.09001 * 109.47127 * 300.00552 * 12 10 9 37 37 H 1.09001 * 109.47129 * 59.99993 * 12 10 9 38 38 H 1.09003 * 109.46494 * 299.99828 * 13 12 10 39 39 H 1.08993 * 109.47329 * 59.99996 * 13 12 10 40 40 H 0.97000 * 120.00476 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.02986 * 180.02562 * 22 8 7 42 42 H 1.08008 * 119.95999 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0721 2.8634 0.0000 6 6 4.2954 3.5167 -1.1982 7 6 4.7611 4.8170 -1.2010 8 6 4.9939 5.4722 0.0011 9 7 5.4599 6.7916 0.0015 10 6 5.0525 7.6498 0.9577 11 8 4.3493 7.2577 1.8648 12 6 5.4707 9.0964 0.8997 13 6 4.8782 9.8469 2.0940 14 6 5.2960 11.2937 2.0355 15 1 5.9218 11.6429 1.2277 16 6 4.8799 12.1714 3.0142 17 7 4.1181 11.7462 3.9983 18 14 5.3971 13.9649 2.9414 19 1 4.9013 14.5723 1.6803 20 1 4.8231 14.6930 4.1014 21 1 6.8787 14.0549 2.9851 22 6 4.7630 4.8153 1.2026 23 6 4.3022 3.5134 1.1986 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9336 0.9286 0.8892 33 1 4.1092 3.0084 -2.1327 34 1 4.9399 5.3251 -2.1372 35 1 6.0760 7.0887 -0.6861 36 1 6.5583 9.1618 0.9331 37 1 5.1083 9.5426 -0.0265 38 1 3.7906 9.7815 2.0608 39 1 5.2410 9.4007 3.0199 40 1 3.8257 12.3635 4.6869 41 1 4.9427 5.3224 2.1391 42 1 4.1220 3.0021 2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290960898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = -47.868172 kcal Electronic energy + Delta-G solvation = -19925.024999 eV Core-core repulsion = 16868.475511 eV Total energy + Delta-G solvation = -3056.549488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25851 -38.58249 -36.07657 -34.39817 -33.52068 -31.72551 -30.93710 -30.75705 -28.03693 -25.79506 -24.08872 -22.90238 -22.04233 -21.32574 -20.66654 -19.69001 -17.50948 -16.95046 -15.98188 -15.67421 -15.52061 -15.16456 -14.48943 -14.43089 -14.27050 -14.07412 -13.43249 -13.30359 -13.10290 -12.85644 -12.80799 -12.28588 -12.19088 -11.88662 -11.55309 -11.39807 -11.23367 -11.06446 -10.94263 -10.87861 -10.73328 -10.64688 -10.01304 -9.95380 -9.70158 -9.24194 -9.09997 -8.81304 -8.35044 -7.86577 -5.98625 -4.03504 1.35120 1.49442 3.07167 3.33041 3.36013 3.38430 3.41962 3.87146 4.45329 4.56098 4.66954 4.84722 4.87788 5.01099 5.09183 5.14594 5.34900 5.36271 5.44785 5.47666 5.49981 5.52606 5.58938 5.72829 5.77421 5.81460 5.90708 6.03811 6.09905 6.13606 6.14191 6.15628 6.38640 6.49220 6.66576 6.71368 6.82260 7.18831 7.69301 7.71611 7.80696 8.02942 8.33887 8.60305 9.04292 9.60199 11.12241 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002648 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.801497 B =10570.654321 C =11065.474427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.075 4.075 5 C -0.108 4.108 6 C -0.101 4.101 7 C -0.150 4.150 8 C 0.152 3.848 9 N -0.687 5.687 10 C 0.509 3.491 11 O -0.514 6.514 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.120 4.120 23 C -0.099 4.099 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.141 0.859 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -21.731 -11.670 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.171 4.171 8 C 0.057 3.943 9 N -0.333 5.333 10 C 0.299 3.701 11 O -0.387 6.387 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.567 4.567 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.141 4.141 23 C -0.117 4.117 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.243 0.757 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.158 0.842 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.812 -21.850 -10.811 24.392 hybrid contribution 0.540 1.244 -0.399 1.413 sum -0.272 -20.606 -11.210 23.460 Atomic orbital electron populations 1.21781 0.95939 1.01423 1.01988 1.21549 0.95867 0.96951 1.01857 1.21632 0.94576 0.96517 1.02648 1.20545 0.95470 0.92744 1.02486 1.19794 1.01573 0.96387 0.93170 1.20726 0.99643 0.94173 0.97406 1.20880 1.03700 0.96059 0.96467 1.17887 0.97971 0.84576 0.93879 1.43929 1.48304 1.08954 1.32126 1.21834 0.78873 0.89077 0.80360 1.90665 1.36063 1.78711 1.33259 1.21911 1.02268 0.88311 1.04387 1.18911 0.96770 0.93417 0.90968 1.21163 1.31980 0.93942 1.09664 0.92589 1.25029 0.95094 0.98840 0.95411 1.69982 1.34954 1.35274 1.12562 0.86633 0.78815 0.84872 0.77497 1.20225 1.21266 1.20231 1.21384 1.00356 0.93995 0.98317 1.20929 0.99049 0.94276 0.97479 0.92656 0.92757 0.92925 0.92155 0.92069 0.91697 0.91867 0.91355 0.91262 0.86186 0.85968 0.75680 0.89860 0.89845 0.95738 0.95727 0.92836 0.84169 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.98 5.20 -26.73 -0.14 -1.12 16 4 C -0.08 -0.65 5.34 -27.89 -0.15 -0.80 16 5 C -0.11 -1.23 5.14 -104.59 -0.54 -1.76 16 6 C -0.10 -1.11 9.69 -39.61 -0.38 -1.50 16 7 C -0.15 -1.82 9.97 -39.39 -0.39 -2.21 16 8 C 0.15 2.24 6.30 -83.69 -0.53 1.71 16 9 N -0.69 -10.07 5.34 -9.86 -0.05 -10.12 16 10 C 0.51 9.70 7.67 -10.98 -0.08 9.62 16 11 O -0.51 -11.84 13.42 5.55 0.07 -11.76 16 12 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 14 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.12 -1.89 8.70 -39.40 -0.34 -2.23 16 23 C -0.10 -1.29 9.69 -39.61 -0.38 -1.68 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.56 8.08 -51.92 -0.42 0.14 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.41 4.47 8.82 -40.82 -0.36 4.11 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.14 2.52 6.22 -52.48 -0.33 2.19 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -33.13 351.83 -9.36 -42.49 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.98 Total: 1.29 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.42 Total: -17.17 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.68 Total: -36.71 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.13 -9.36 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290960898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.374 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds