Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46807 * 2 1 4 4 C 1.52998 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47123 * 180.02562 * 4 3 2 6 6 C 1.38287 * 119.92657 * 270.31444 * 5 4 3 7 7 C 1.38118 * 120.06716 * 180.27633 * 6 5 4 8 8 C 1.38874 * 119.92887 * 359.42718 * 7 6 5 9 9 N 1.39923 * 120.06578 * 180.29339 * 8 7 6 10 10 C 1.34784 * 119.99354 * 144.91266 * 9 8 7 11 11 O 1.21283 * 119.99989 * 4.62666 * 10 9 8 12 12 C 1.50703 * 119.99893 * 184.62204 * 10 9 8 13 13 C 1.52999 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.46729 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00560 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99401 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00483 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99696 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47262 * 59.99707 * 18 16 14 20 20 H 1.48501 * 109.46925 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46934 * 299.99695 * 18 16 14 22 22 C 1.38872 * 119.85875 * 0.28010 * 8 7 6 23 23 C 1.38106 * 119.92759 * 359.97438 * 22 8 7 24 24 H 1.08998 * 109.47330 * 300.00007 * 1 2 3 25 25 H 1.09001 * 109.47656 * 59.99935 * 1 2 3 26 26 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47330 * 239.99993 * 2 1 3 28 28 H 1.08996 * 109.47223 * 119.99898 * 2 1 3 29 29 H 1.08998 * 109.47182 * 59.99902 * 3 2 1 30 30 H 1.09005 * 109.47257 * 299.99696 * 3 2 1 31 31 H 1.08998 * 109.47527 * 59.99767 * 4 3 2 32 32 H 1.09010 * 109.47029 * 299.99922 * 4 3 2 33 33 H 1.08000 * 119.96888 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.03200 * 179.69943 * 7 6 5 35 35 H 0.96992 * 120.00802 * 324.91917 * 9 8 7 36 36 H 1.09001 * 109.47127 * 300.00552 * 12 10 9 37 37 H 1.09001 * 109.47129 * 59.99993 * 12 10 9 38 38 H 1.09003 * 109.46494 * 299.99828 * 13 12 10 39 39 H 1.08993 * 109.47329 * 59.99996 * 13 12 10 40 40 H 0.97000 * 120.00476 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.02986 * 180.02562 * 22 8 7 42 42 H 1.08008 * 119.95999 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0721 2.8634 0.0000 6 6 4.2954 3.5167 -1.1982 7 6 4.7611 4.8170 -1.2010 8 6 4.9939 5.4722 0.0011 9 7 5.4599 6.7916 0.0015 10 6 5.0525 7.6498 0.9577 11 8 4.3493 7.2577 1.8648 12 6 5.4707 9.0964 0.8997 13 6 4.8782 9.8469 2.0940 14 6 5.2960 11.2937 2.0355 15 1 5.9218 11.6429 1.2277 16 6 4.8799 12.1714 3.0142 17 7 4.1181 11.7462 3.9983 18 14 5.3971 13.9649 2.9414 19 1 4.9013 14.5723 1.6803 20 1 4.8231 14.6930 4.1014 21 1 6.8787 14.0549 2.9851 22 6 4.7630 4.8153 1.2026 23 6 4.3022 3.5134 1.1986 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9336 0.9286 0.8892 33 1 4.1092 3.0084 -2.1327 34 1 4.9399 5.3251 -2.1372 35 1 6.0760 7.0887 -0.6861 36 1 6.5583 9.1618 0.9331 37 1 5.1083 9.5426 -0.0265 38 1 3.7906 9.7815 2.0608 39 1 5.2410 9.4007 3.0199 40 1 3.8257 12.3635 4.6869 41 1 4.9427 5.3224 2.1391 42 1 4.1220 3.0021 2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290960898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = -66.958721 kcal Electronic energy + Delta-G solvation = -19925.852828 eV Core-core repulsion = 16868.475511 eV Total energy + Delta-G solvation = -3057.377317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53314 -39.77146 -36.95770 -35.62021 -35.47544 -33.21618 -32.20378 -31.85059 -29.09628 -27.56709 -25.13326 -23.97476 -23.58293 -22.13005 -21.66403 -21.15867 -18.92449 -18.56890 -17.60015 -16.82649 -16.56603 -16.44970 -16.23869 -15.54726 -15.34010 -14.91448 -14.72318 -14.45711 -14.29438 -14.17726 -13.71730 -13.66329 -13.47330 -13.27209 -12.79252 -12.72559 -12.52684 -12.29974 -12.07061 -11.94813 -11.87906 -11.67321 -11.63760 -11.37438 -11.33599 -11.10452 -10.70663 -10.56970 -9.84920 -8.96183 -8.19220 -6.33582 0.30243 0.48171 1.41678 1.46250 1.53955 1.62283 2.11907 2.43271 2.84919 3.13805 3.83181 3.84892 3.98889 4.09976 4.15343 4.22102 4.38761 4.41060 4.47127 4.50840 4.52100 4.65446 4.69840 4.86105 4.86842 4.99822 5.01325 5.03900 5.14537 5.18285 5.32680 5.39130 5.39807 5.44248 5.47797 5.52413 5.59599 5.60023 5.75063 5.83089 6.12606 6.15481 6.48604 6.84570 7.21481 7.36786 8.93262 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002648 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.801497 B =10570.654321 C =11065.474427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.072 4.072 5 C -0.101 4.101 6 C -0.098 4.098 7 C -0.140 4.140 8 C 0.122 3.878 9 N -0.664 5.664 10 C 0.510 3.490 11 O -0.566 6.566 12 C -0.116 4.116 13 C 0.042 3.958 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.149 4.149 23 C -0.111 4.111 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.428 0.572 36 H 0.110 0.890 37 H 0.110 0.890 38 H -0.018 1.018 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.104 0.896 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -22.436 -14.958 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.109 4.109 5 C -0.102 4.102 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.028 3.972 9 N -0.311 5.311 10 C 0.300 3.700 11 O -0.444 6.444 12 C -0.156 4.156 13 C 0.004 3.996 14 C -0.582 4.582 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.169 4.169 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.279 -22.583 -14.165 26.659 hybrid contribution 0.176 1.315 0.605 1.458 sum 0.454 -21.267 -13.560 25.227 Atomic orbital electron populations 1.21801 0.96035 1.01930 1.01589 1.21525 0.95777 0.95951 1.02621 1.21597 0.94459 0.97389 1.01723 1.20595 0.95366 0.91020 1.03895 1.20151 0.99884 0.97611 0.92547 1.21185 0.98073 0.93770 0.98599 1.21198 1.02172 0.96388 0.96281 1.18090 0.99946 0.84459 0.94688 1.43508 1.47787 1.08602 1.31168 1.21630 0.78456 0.89356 0.80580 1.90662 1.38685 1.79445 1.35568 1.21665 1.03424 0.88311 1.02181 1.18694 0.94345 0.94240 0.92316 1.21683 1.31838 0.94532 1.10138 0.90388 1.26162 0.94944 1.04585 0.94870 1.70171 1.36652 1.37293 1.13692 0.85355 0.78996 0.77944 0.77835 1.18628 1.21428 1.18639 1.21276 1.02615 0.95377 0.97635 1.21073 0.99306 0.93548 0.98994 0.93498 0.92767 0.91982 0.90871 0.91785 0.93476 0.92014 0.89125 0.90712 0.82654 0.82981 0.73307 0.87172 0.87193 0.99964 0.99867 0.92847 0.87784 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.11 -1.73 5.20 30.59 0.16 -1.57 16 4 C -0.07 -1.05 5.34 29.85 0.16 -0.89 16 5 C -0.10 -2.10 5.14 -19.84 -0.10 -2.20 16 6 C -0.10 -1.84 9.69 22.25 0.22 -1.62 16 7 C -0.14 -3.01 9.97 22.39 0.22 -2.79 16 8 C 0.12 3.56 6.30 38.15 0.24 3.80 16 9 N -0.66 -19.08 5.34 -303.49 -1.62 -20.70 16 10 C 0.51 20.03 7.67 87.66 0.67 20.70 16 11 O -0.57 -28.06 13.42 -3.04 -0.04 -28.10 16 12 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 13 C 0.04 2.32 4.26 29.85 0.13 2.45 16 14 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 16 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 17 N -0.94 -59.87 13.29 21.45 0.28 -59.59 16 18 Si 0.98 44.30 29.54 68.60 2.03 46.32 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 C -0.15 -4.92 8.70 22.39 0.19 -4.72 16 23 C -0.11 -2.95 9.69 22.25 0.22 -2.73 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.43 8.45 8.82 -92.71 -0.82 7.63 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 38 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 39 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 40 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 41 H 0.10 4.16 6.22 -2.91 -0.02 4.14 16 42 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -77.05 351.83 4.68 -72.37 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.17 Total: 16.88 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.86 Total: -27.18 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.33 Total: -80.29 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.04 Total: -28.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.05 4.68 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290960898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.409 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds