Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47463 * 2 1 4 4 C 1.53000 * 109.47347 * 239.99639 * 2 1 3 5 5 C 1.50699 * 109.47016 * 119.99809 * 2 1 3 6 6 C 1.38286 * 119.92767 * 59.99958 * 5 2 1 7 7 C 1.38114 * 120.06601 * 180.25261 * 6 5 2 8 8 C 1.38873 * 119.93231 * 359.51868 * 7 6 5 9 9 N 1.39924 * 120.07232 * 180.21063 * 8 7 6 10 10 C 1.34777 * 120.00128 * 33.46006 * 9 8 7 11 11 O 1.21284 * 119.99696 * 5.26991 * 10 9 8 12 12 C 1.50697 * 120.00105 * 185.27367 * 10 9 8 13 13 C 1.52997 * 109.47339 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47339 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99965 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99870 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00268 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46858 * 90.00003 * 18 16 14 20 20 H 1.48497 * 109.47520 * 209.99878 * 18 16 14 21 21 H 1.48503 * 109.47084 * 330.00308 * 18 16 14 22 22 C 1.38869 * 119.85638 * 0.49926 * 8 7 6 23 23 C 1.38110 * 119.93217 * 359.73411 * 22 8 7 24 24 H 1.09000 * 109.47149 * 300.00265 * 1 2 3 25 25 H 1.08998 * 109.46956 * 60.00378 * 1 2 3 26 26 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47616 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46982 * 299.99796 * 3 2 1 29 29 H 1.09000 * 109.47154 * 59.99738 * 3 2 1 30 30 H 1.09000 * 109.47057 * 300.00594 * 4 2 1 31 31 H 1.08998 * 109.47106 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47597 * 180.02562 * 4 2 1 33 33 H 1.07990 * 119.96579 * 359.97438 * 6 5 2 34 34 H 1.08005 * 120.03422 * 179.72608 * 7 6 5 35 35 H 0.97002 * 119.99850 * 213.46174 * 9 8 7 36 36 H 1.08998 * 109.46975 * 300.00057 * 12 10 9 37 37 H 1.09008 * 109.47124 * 59.99687 * 12 10 9 38 38 H 1.08998 * 109.47439 * 300.00147 * 13 12 10 39 39 H 1.09008 * 109.46963 * 59.99963 * 13 12 10 40 40 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.03573 * 179.70281 * 22 8 7 42 42 H 1.08001 * 119.96839 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.6972 -2.0343 1.4479 7 6 2.1517 -2.6866 2.5773 8 6 2.9541 -2.0145 3.4899 9 7 3.4198 -2.6738 4.6329 10 6 3.7058 -3.9899 4.5822 11 8 3.6516 -4.5819 3.5250 12 6 4.0930 -4.7258 5.8389 13 6 4.3629 -6.1948 5.5072 14 6 4.7507 -6.9306 6.7639 15 1 4.7993 -6.4033 7.7052 16 6 5.0434 -8.2769 6.7119 17 7 5.3823 -8.9189 7.8086 18 14 4.9587 -9.1891 5.0840 19 1 6.2823 -9.1289 4.4134 20 1 4.5923 -10.6071 5.3296 21 1 3.9342 -8.5565 4.2148 22 6 3.2884 -0.6849 3.2689 23 6 2.8268 -0.0368 2.1400 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.0759 -2.5574 0.7361 34 1 1.8861 -3.7193 2.7488 35 1 3.5367 -2.1837 5.4617 36 1 4.9924 -4.2769 6.2604 37 1 3.2808 -4.6606 6.5631 38 1 3.4633 -6.6435 5.0860 39 1 5.1750 -6.2604 4.7829 40 1 5.5879 -9.8662 7.7721 41 1 3.9083 -0.1580 3.9792 42 1 3.0861 0.9974 1.9677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290964374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = -35.351313 kcal Electronic energy + Delta-G solvation = -20554.096088 eV Core-core repulsion = 17498.089372 eV Total energy + Delta-G solvation = -3056.006717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48478 -39.14154 -36.59648 -34.01913 -33.55069 -31.39567 -31.12750 -28.92843 -27.59685 -27.46259 -26.11885 -23.14638 -22.55798 -21.17985 -19.73224 -19.34982 -17.73921 -17.21219 -16.10060 -15.85960 -15.41112 -14.85862 -14.48401 -14.41472 -14.10918 -13.82801 -13.57363 -13.44364 -13.06113 -12.78595 -12.63115 -12.59566 -12.22492 -12.14200 -11.92255 -11.61308 -11.46503 -11.21284 -11.00502 -10.89860 -10.69634 -10.22114 -10.12030 -10.06093 -9.81477 -9.34312 -9.22087 -8.88008 -8.53675 -7.92413 -6.05709 -4.04959 1.29416 1.43486 2.94957 3.29456 3.36145 3.42921 3.53030 3.82545 4.42675 4.48384 4.54347 4.77388 4.93399 4.99674 5.08835 5.23209 5.29631 5.30949 5.38513 5.39451 5.51865 5.57597 5.64497 5.65951 5.69800 5.74058 5.83698 5.96294 6.00364 6.03493 6.05250 6.08131 6.36140 6.40249 6.59107 6.63137 6.64114 7.10104 7.30835 7.37463 7.59131 7.74822 8.41907 8.51373 8.96771 9.56987 11.07026 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003177 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.950978 B = 8811.958567 C = 9304.049279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.121 4.121 8 C 0.154 3.846 9 N -0.685 5.685 10 C 0.509 3.491 11 O -0.519 6.519 12 C -0.121 4.121 13 C 0.001 3.999 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.151 4.151 23 C -0.103 4.103 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.409 0.591 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 22.117 -13.928 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.097 4.097 6 C -0.113 4.113 7 C -0.141 4.141 8 C 0.059 3.941 9 N -0.331 5.331 10 C 0.299 3.701 11 O -0.393 6.393 12 C -0.161 4.161 13 C -0.037 4.037 14 C -0.564 4.564 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.172 4.172 23 C -0.121 4.121 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.245 0.755 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.432 21.423 -14.562 27.241 hybrid contribution 0.174 -0.357 -0.230 0.459 sum -8.257 21.066 -14.791 27.032 Atomic orbital electron populations 1.21889 0.93886 1.02101 1.01659 1.19439 0.95536 0.94854 0.92813 1.21956 1.01198 0.95111 1.01760 1.21899 1.01342 1.00310 0.96092 1.19713 0.99553 0.94140 0.96316 1.20825 0.99677 0.93882 0.96959 1.21194 0.96936 1.01084 0.94888 1.17859 0.94924 0.92020 0.89307 1.43907 1.66452 1.10697 1.12043 1.21797 0.75051 0.80645 0.92619 1.90669 1.49983 1.66784 1.31871 1.21710 1.02589 0.98882 0.92928 1.19383 0.97492 0.89239 0.97546 1.21086 1.46772 0.94318 0.94236 0.90881 1.24971 0.94319 0.97549 0.96373 1.69911 1.46890 1.09823 1.27502 0.86794 0.79338 0.78806 0.84599 1.20216 1.21396 1.18555 1.20881 1.02830 0.94138 0.99328 1.20896 0.97851 0.99803 0.93579 0.92527 0.92549 0.92399 0.92281 0.92548 0.92300 0.92367 0.92546 0.92469 0.86130 0.84765 0.75505 0.89290 0.89138 0.95745 0.96188 0.92669 0.85934 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.29 37.15 0.31 -0.75 16 2 C -0.03 -0.22 0.85 -155.67 -0.13 -0.36 16 3 C -0.14 -1.01 7.13 37.16 0.26 -0.75 16 4 C -0.14 -1.15 8.29 37.16 0.31 -0.85 16 5 C -0.10 -1.04 4.76 -104.59 -0.50 -1.54 16 6 C -0.09 -1.18 8.70 -39.61 -0.34 -1.52 16 7 C -0.12 -1.80 8.66 -39.39 -0.34 -2.14 16 8 C 0.15 2.16 6.28 -83.69 -0.53 1.63 16 9 N -0.69 -9.53 5.34 -9.86 -0.05 -9.58 16 10 C 0.51 9.16 7.57 -10.99 -0.08 9.08 16 11 O -0.52 -11.26 13.68 5.55 0.08 -11.18 16 12 C -0.12 -2.28 5.64 -27.89 -0.16 -2.44 16 13 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 14 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 18 Si 0.88 22.49 27.47 -169.99 -4.67 17.83 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 22 C -0.15 -1.75 9.96 -39.39 -0.39 -2.14 16 23 C -0.10 -1.09 8.97 -39.61 -0.36 -1.44 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 27 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 30 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.12 1.32 7.09 -52.49 -0.37 0.95 16 34 H 0.13 2.27 6.43 -52.48 -0.34 1.93 16 35 H 0.41 4.24 8.82 -40.82 -0.36 3.88 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.02 0.51 7.53 -51.92 -0.39 0.12 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.05 5.88 -52.49 -0.31 0.74 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -33.31 338.79 -7.89 -41.21 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.66 Total: 0.31 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.47 Total: -16.59 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.72 Total: -36.68 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.31 -7.89 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290964374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.858 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds