Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47463 * 2 1 4 4 C 1.53000 * 109.47347 * 239.99639 * 2 1 3 5 5 C 1.50699 * 109.47016 * 119.99809 * 2 1 3 6 6 C 1.38286 * 119.92767 * 59.99958 * 5 2 1 7 7 C 1.38114 * 120.06601 * 180.25261 * 6 5 2 8 8 C 1.38873 * 119.93231 * 359.51868 * 7 6 5 9 9 N 1.39924 * 120.07232 * 180.21063 * 8 7 6 10 10 C 1.34777 * 120.00128 * 33.46006 * 9 8 7 11 11 O 1.21284 * 119.99696 * 5.26991 * 10 9 8 12 12 C 1.50697 * 120.00105 * 185.27367 * 10 9 8 13 13 C 1.52997 * 109.47339 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47339 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99965 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99870 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00268 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46858 * 90.00003 * 18 16 14 20 20 H 1.48497 * 109.47520 * 209.99878 * 18 16 14 21 21 H 1.48503 * 109.47084 * 330.00308 * 18 16 14 22 22 C 1.38869 * 119.85638 * 0.49926 * 8 7 6 23 23 C 1.38110 * 119.93217 * 359.73411 * 22 8 7 24 24 H 1.09000 * 109.47149 * 300.00265 * 1 2 3 25 25 H 1.08998 * 109.46956 * 60.00378 * 1 2 3 26 26 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47616 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46982 * 299.99796 * 3 2 1 29 29 H 1.09000 * 109.47154 * 59.99738 * 3 2 1 30 30 H 1.09000 * 109.47057 * 300.00594 * 4 2 1 31 31 H 1.08998 * 109.47106 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47597 * 180.02562 * 4 2 1 33 33 H 1.07990 * 119.96579 * 359.97438 * 6 5 2 34 34 H 1.08005 * 120.03422 * 179.72608 * 7 6 5 35 35 H 0.97002 * 119.99850 * 213.46174 * 9 8 7 36 36 H 1.08998 * 109.46975 * 300.00057 * 12 10 9 37 37 H 1.09008 * 109.47124 * 59.99687 * 12 10 9 38 38 H 1.08998 * 109.47439 * 300.00147 * 13 12 10 39 39 H 1.09008 * 109.46963 * 59.99963 * 13 12 10 40 40 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.03573 * 179.70281 * 22 8 7 42 42 H 1.08001 * 119.96839 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.6972 -2.0343 1.4479 7 6 2.1517 -2.6866 2.5773 8 6 2.9541 -2.0145 3.4899 9 7 3.4198 -2.6738 4.6329 10 6 3.7058 -3.9899 4.5822 11 8 3.6516 -4.5819 3.5250 12 6 4.0930 -4.7258 5.8389 13 6 4.3629 -6.1948 5.5072 14 6 4.7507 -6.9306 6.7639 15 1 4.7993 -6.4033 7.7052 16 6 5.0434 -8.2769 6.7119 17 7 5.3823 -8.9189 7.8086 18 14 4.9587 -9.1891 5.0840 19 1 6.2823 -9.1289 4.4134 20 1 4.5923 -10.6071 5.3296 21 1 3.9342 -8.5565 4.2148 22 6 3.2884 -0.6849 3.2689 23 6 2.8268 -0.0368 2.1400 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.0759 -2.5574 0.7361 34 1 1.8861 -3.7193 2.7488 35 1 3.5367 -2.1837 5.4617 36 1 4.9924 -4.2769 6.2604 37 1 3.2808 -4.6606 6.5631 38 1 3.4633 -6.6435 5.0860 39 1 5.1750 -6.2604 4.7829 40 1 5.5879 -9.8662 7.7721 41 1 3.9083 -0.1580 3.9792 42 1 3.0861 0.9974 1.9677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290964374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = -55.142806 kcal Electronic energy + Delta-G solvation = -20554.954312 eV Core-core repulsion = 17498.089372 eV Total energy + Delta-G solvation = -3056.864940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61905 -40.21919 -37.55702 -35.58109 -35.14579 -33.34910 -32.06037 -30.07475 -28.20466 -28.07811 -27.87174 -24.41914 -23.50715 -22.76095 -21.16818 -20.14079 -19.27553 -18.69979 -17.70523 -16.80124 -16.62578 -16.27369 -15.85687 -15.47742 -15.10852 -15.05439 -14.67670 -14.60751 -14.54576 -14.17356 -13.72405 -13.62403 -13.43644 -13.06365 -12.91866 -12.72228 -12.52214 -12.43799 -12.14516 -12.00066 -11.87601 -11.79969 -11.65360 -11.43199 -11.41844 -11.17588 -10.79788 -10.75697 -9.84812 -8.95620 -8.33203 -6.36169 0.29912 0.47964 1.31682 1.33842 1.48389 1.60626 2.10183 2.33184 2.86082 3.02543 3.71285 3.77503 3.89829 4.08672 4.16272 4.17662 4.33752 4.41558 4.44595 4.47589 4.61215 4.68429 4.80610 4.84633 4.93633 4.95167 5.03478 5.05800 5.07274 5.13823 5.24030 5.30612 5.36547 5.40891 5.45276 5.46466 5.48103 5.57732 5.61449 5.75908 6.11030 6.21213 6.45686 6.70360 7.16660 7.29283 8.82402 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003177 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.950978 B = 8811.958567 C = 9304.049279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.146 4.146 8 C 0.126 3.874 9 N -0.664 5.664 10 C 0.514 3.486 11 O -0.564 6.564 12 C -0.114 4.114 13 C 0.005 3.995 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.143 4.143 23 C -0.102 4.102 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.427 0.573 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.268 0.732 41 H 0.150 0.850 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 24.870 -15.330 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.166 4.166 8 C 0.032 3.968 9 N -0.311 5.311 10 C 0.304 3.696 11 O -0.441 6.441 12 C -0.153 4.153 13 C -0.033 4.033 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.184 4.184 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.163 4.163 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.266 0.734 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.168 0.832 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.661 24.232 -15.945 30.272 hybrid contribution 0.201 -1.098 0.201 1.134 sum -8.460 23.134 -15.743 29.233 Atomic orbital electron populations 1.21884 0.93261 1.01895 1.02413 1.19517 0.96025 0.95642 0.91517 1.21958 1.01306 0.93863 1.02801 1.21907 1.00881 1.00082 0.96821 1.20066 0.98540 0.93424 0.97139 1.20937 0.99974 0.94875 0.96418 1.21124 0.98724 1.00145 0.96604 1.18042 0.96140 0.93181 0.89421 1.43538 1.65111 1.09312 1.13144 1.21474 0.74890 0.81859 0.91420 1.90660 1.52291 1.68070 1.33104 1.21519 1.04295 0.95622 0.93901 1.19230 0.96209 0.92630 0.95271 1.21412 1.45804 0.94570 0.94900 0.92948 1.25790 0.94323 0.98722 0.99535 1.70020 1.48391 1.10401 1.29512 0.85844 0.79498 0.77897 0.80558 1.19407 1.20330 1.18666 1.21184 1.02239 0.92862 0.99992 1.21299 0.96840 1.01062 0.92782 0.92579 0.90991 0.93157 0.92121 0.91251 0.91638 0.93287 0.90852 0.93169 0.85585 0.87802 0.73359 0.87306 0.87426 0.97147 0.97265 0.92347 0.83193 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.29 71.98 0.60 -1.21 16 2 C -0.03 -0.39 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -1.50 7.13 71.98 0.51 -0.99 16 4 C -0.14 -2.05 8.29 71.98 0.60 -1.46 16 5 C -0.09 -1.80 4.76 -19.84 -0.09 -1.90 16 6 C -0.10 -2.56 8.70 22.25 0.19 -2.36 16 7 C -0.15 -4.43 8.66 22.39 0.19 -4.23 16 8 C 0.13 3.42 6.28 38.15 0.24 3.66 16 9 N -0.66 -17.72 5.34 -303.51 -1.62 -19.34 16 10 C 0.51 18.38 7.57 87.66 0.66 19.05 16 11 O -0.56 -25.02 13.68 -3.04 -0.04 -25.06 16 12 C -0.11 -4.21 5.64 29.85 0.17 -4.04 16 13 C 0.00 0.23 3.33 29.85 0.10 0.33 16 14 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 15 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 16 C 0.01 0.84 5.47 84.65 0.46 1.30 16 17 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 18 Si 0.94 46.93 27.47 68.60 1.88 48.81 16 19 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.26 -13.08 6.54 99.48 0.65 -12.43 16 22 C -0.14 -2.91 9.96 22.39 0.22 -2.69 16 23 C -0.10 -1.84 8.97 22.25 0.20 -1.64 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.73 7.38 -2.39 -0.02 0.71 16 27 H 0.06 0.64 7.51 -2.39 -0.02 0.62 16 28 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.06 0.62 7.51 -2.39 -0.02 0.60 16 30 H 0.05 0.80 7.38 -2.39 -0.02 0.78 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.13 2.83 7.09 -2.92 -0.02 2.81 16 34 H 0.10 3.75 6.43 -2.91 -0.02 3.73 16 35 H 0.43 7.92 8.82 -92.71 -0.82 7.10 16 36 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 38 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 39 H 0.01 0.46 7.53 -2.38 -0.02 0.44 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.16 1.91 5.88 -2.91 -0.02 1.89 16 Total: -1.00 -73.27 338.79 4.91 -68.36 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.13 Total: 12.71 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.26 Total: -26.75 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.32 Total: -78.07 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.04 Total: -25.06 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.81 kcal Total: -73.27 4.91 -68.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290964374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.217 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds