Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46859 * 240.00147 * 2 1 3 5 5 C 1.50695 * 109.47078 * 119.99700 * 2 1 3 6 6 C 1.38136 * 120.03741 * 358.55058 * 5 2 1 7 7 C 1.38266 * 120.06866 * 179.97438 * 6 5 2 8 8 C 1.38294 * 120.14303 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.07322 * 359.75065 * 8 7 6 10 10 C 1.38853 * 120.03619 * 178.52205 * 5 2 1 11 11 N 1.39929 * 120.06573 * 359.97438 * 10 5 2 12 12 C 1.34782 * 119.99894 * 185.51007 * 11 10 5 13 13 O 1.21294 * 119.99803 * 353.99491 * 12 11 10 14 14 C 1.50690 * 120.00188 * 173.71216 * 12 11 10 15 15 C 1.53001 * 109.47519 * 180.27833 * 14 12 11 16 16 C 1.50695 * 109.47197 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00184 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46782 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47066 * 119.99967 * 20 18 16 23 23 H 1.48498 * 109.46936 * 240.00057 * 20 18 16 24 24 H 1.08998 * 109.46951 * 299.99725 * 1 2 3 25 25 H 1.08996 * 109.47096 * 60.00033 * 1 2 3 26 26 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47192 * 173.92945 * 3 2 1 28 28 H 1.09003 * 109.47120 * 293.92976 * 3 2 1 29 29 H 1.09004 * 109.47434 * 53.92341 * 3 2 1 30 30 H 1.09003 * 109.47284 * 305.36140 * 4 2 1 31 31 H 1.08996 * 109.47458 * 65.36789 * 4 2 1 32 32 H 1.09004 * 109.46786 * 185.36967 * 4 2 1 33 33 H 1.07994 * 119.96328 * 359.96989 * 6 5 2 34 34 H 1.08006 * 119.92319 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.96412 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.04108 * 180.27411 * 9 8 7 37 37 H 0.96997 * 120.00177 * 5.51810 * 11 10 5 38 38 H 1.09000 * 109.47240 * 300.27932 * 14 12 11 39 39 H 1.08998 * 109.46997 * 60.27674 * 14 12 11 40 40 H 1.09000 * 109.46945 * 300.00280 * 15 14 12 41 41 H 1.08998 * 109.47115 * 59.99914 * 15 14 12 42 42 H 0.97002 * 120.00219 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.1357 -1.2093 2.1553 7 6 1.5959 -1.8616 3.2842 8 6 2.9544 -2.0162 3.4916 9 6 3.8558 -1.5238 2.5687 10 6 3.3970 -0.8645 1.4356 11 7 4.3078 -0.3612 0.5001 12 6 5.6252 -0.6074 0.6424 13 8 6.0331 -1.1705 1.6362 14 6 6.5908 -0.1887 -0.4361 15 6 8.0113 -0.5888 -0.0324 16 6 8.9768 -0.1706 -1.1113 17 1 8.6136 0.3307 -1.9962 18 6 10.3239 -0.4272 -0.9681 19 7 10.7662 -1.0373 0.1097 20 14 11.5208 0.0917 -2.3051 21 1 10.7762 0.7541 -3.4061 22 1 12.5149 1.0387 -1.7392 23 1 12.2227 -1.1057 -2.8331 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1246 1.4444 0.1087 28 1 1.7681 1.9240 -0.9394 29 1 1.5906 1.9868 0.8306 30 1 1.6003 -1.7174 -1.2986 31 1 1.7573 -0.1549 -2.1366 32 1 3.1258 -0.8053 -1.2025 33 1 0.0743 -1.0896 1.9964 34 1 0.8928 -2.2511 4.0056 35 1 3.3107 -2.5259 4.3747 36 1 4.9165 -1.6488 2.7290 37 1 3.9910 0.1649 -0.2507 38 1 6.3266 -0.6816 -1.3717 39 1 6.5415 0.8921 -0.5683 40 1 8.2756 -0.0959 0.9032 41 1 8.0607 -1.6696 0.0998 42 1 11.7140 -1.2175 0.2106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291050173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = -9.602094 kcal Electronic energy + Delta-G solvation = -21352.275148 eV Core-core repulsion = 18297.385001 eV Total energy + Delta-G solvation = -3054.890147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92949 -38.72956 -36.41636 -34.51785 -33.56971 -31.29999 -30.02679 -29.19935 -27.65837 -27.45116 -25.77318 -22.90935 -22.81176 -21.20163 -20.17538 -19.31302 -17.32755 -17.01058 -16.00180 -15.89724 -15.24212 -14.65855 -14.47419 -14.45648 -14.23201 -13.89485 -13.66787 -13.29018 -13.14199 -12.43791 -12.40957 -12.21168 -12.06815 -12.00298 -11.90404 -11.50153 -11.23065 -11.15751 -10.98629 -10.89335 -10.62924 -10.60249 -10.38787 -10.05206 -9.66422 -9.15479 -8.76434 -8.63410 -8.37060 -7.76831 -6.00417 -4.05114 1.43679 1.59392 3.03258 3.30325 3.31456 3.38225 3.41234 3.98548 4.43929 4.46619 4.59003 4.80037 5.00190 5.09437 5.14066 5.34987 5.35674 5.37885 5.39884 5.52548 5.53419 5.63289 5.67704 5.72434 5.74547 5.84189 5.96084 6.05472 6.08343 6.11630 6.14434 6.24821 6.48836 6.58789 6.69541 6.78896 6.81059 7.31807 7.68896 7.71420 7.77976 8.00630 8.32211 8.55582 9.02712 9.58925 11.10487 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003945 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.801414 B = 7096.147039 C = 7945.479081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.101 4.101 7 C -0.155 4.155 8 C -0.102 4.102 9 C -0.172 4.172 10 C 0.166 3.834 11 N -0.679 5.679 12 C 0.507 3.493 13 O -0.505 6.505 14 C -0.131 4.131 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.186 0.814 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.028 2.216 0.443 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.208 4.208 4 C -0.211 4.211 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.174 4.174 8 C -0.120 4.120 9 C -0.191 4.191 10 C 0.070 3.930 11 N -0.327 5.327 12 C 0.298 3.702 13 O -0.380 6.380 14 C -0.171 4.171 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.202 0.798 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.472 1.774 1.143 21.575 hybrid contribution 0.418 0.462 -0.982 1.163 sum -21.054 2.236 0.161 21.173 Atomic orbital electron populations 1.21910 0.93886 1.01963 1.01834 1.19436 0.96101 0.94663 0.92618 1.22088 1.01313 0.95041 1.02392 1.22126 1.01814 1.00826 0.96372 1.19437 0.91265 1.03900 0.97813 1.20843 0.98963 0.98303 0.93868 1.21053 0.95772 1.02190 0.98363 1.21172 0.92958 0.98965 0.98951 1.22924 1.04988 0.98580 0.92637 1.17890 0.88278 0.96324 0.90535 1.44590 1.06965 1.53435 1.27685 1.21925 0.81776 0.77598 0.88905 1.90287 1.77215 1.40453 1.30046 1.21950 0.97467 1.02062 0.95594 1.18927 0.86260 0.97852 0.97087 1.21222 0.92013 1.38778 1.04632 0.92494 1.25018 0.98477 0.95152 0.95662 1.70000 1.14504 1.41333 1.26866 0.86531 0.81172 0.78318 0.81920 1.19732 1.20982 1.20988 0.92258 0.92391 0.92238 0.92280 0.91837 0.91992 0.92051 0.91926 0.91894 0.85848 0.86714 0.86215 0.79765 0.74622 0.89733 0.89828 0.95611 0.95621 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.13 37.16 0.27 -0.83 16 2 C -0.03 -0.28 0.75 -155.66 -0.12 -0.39 16 3 C -0.15 -1.41 8.17 37.16 0.30 -1.10 16 4 C -0.15 -1.49 8.16 37.16 0.30 -1.19 16 5 C -0.12 -1.52 4.77 -104.43 -0.50 -2.02 16 6 C -0.10 -1.18 8.97 -39.61 -0.36 -1.53 16 7 C -0.15 -1.86 10.04 -39.55 -0.40 -2.26 16 8 C -0.10 -1.41 10.04 -39.62 -0.40 -1.81 16 9 C -0.17 -2.84 9.06 -39.39 -0.36 -3.20 16 10 C 0.17 2.53 6.20 -83.69 -0.52 2.01 16 11 N -0.68 -10.20 3.76 -9.86 -0.04 -10.24 16 12 C 0.51 9.54 7.77 -10.99 -0.09 9.46 16 13 O -0.50 -11.19 12.38 5.55 0.07 -11.12 16 14 C -0.13 -2.56 5.64 -27.89 -0.16 -2.72 16 15 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 16 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.06 0.45 7.44 -51.93 -0.39 0.06 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 27 H 0.06 0.61 5.21 -51.93 -0.27 0.34 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 5.06 -51.93 -0.26 0.42 16 33 H 0.12 1.13 5.89 -52.49 -0.31 0.82 16 34 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.19 3.55 4.51 -56.33 -0.25 3.30 16 37 H 0.41 5.08 3.70 -40.82 -0.15 4.93 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -31.99 330.58 -8.03 -40.02 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.22 Total: 4.39 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.54 Total: -18.15 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.70 Total: -36.47 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.99 -8.03 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291050173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.420 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds