Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46859 * 240.00147 * 2 1 3 5 5 C 1.50695 * 109.47078 * 119.99700 * 2 1 3 6 6 C 1.38136 * 120.03741 * 358.55058 * 5 2 1 7 7 C 1.38266 * 120.06866 * 179.97438 * 6 5 2 8 8 C 1.38294 * 120.14303 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.07322 * 359.75065 * 8 7 6 10 10 C 1.38853 * 120.03619 * 178.52205 * 5 2 1 11 11 N 1.39929 * 120.06573 * 359.97438 * 10 5 2 12 12 C 1.34782 * 119.99894 * 185.51007 * 11 10 5 13 13 O 1.21294 * 119.99803 * 353.99491 * 12 11 10 14 14 C 1.50690 * 120.00188 * 173.71216 * 12 11 10 15 15 C 1.53001 * 109.47519 * 180.27833 * 14 12 11 16 16 C 1.50695 * 109.47197 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00184 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46782 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47066 * 119.99967 * 20 18 16 23 23 H 1.48498 * 109.46936 * 240.00057 * 20 18 16 24 24 H 1.08998 * 109.46951 * 299.99725 * 1 2 3 25 25 H 1.08996 * 109.47096 * 60.00033 * 1 2 3 26 26 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47192 * 173.92945 * 3 2 1 28 28 H 1.09003 * 109.47120 * 293.92976 * 3 2 1 29 29 H 1.09004 * 109.47434 * 53.92341 * 3 2 1 30 30 H 1.09003 * 109.47284 * 305.36140 * 4 2 1 31 31 H 1.08996 * 109.47458 * 65.36789 * 4 2 1 32 32 H 1.09004 * 109.46786 * 185.36967 * 4 2 1 33 33 H 1.07994 * 119.96328 * 359.96989 * 6 5 2 34 34 H 1.08006 * 119.92319 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.96412 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.04108 * 180.27411 * 9 8 7 37 37 H 0.96997 * 120.00177 * 5.51810 * 11 10 5 38 38 H 1.09000 * 109.47240 * 300.27932 * 14 12 11 39 39 H 1.08998 * 109.46997 * 60.27674 * 14 12 11 40 40 H 1.09000 * 109.46945 * 300.00280 * 15 14 12 41 41 H 1.08998 * 109.47115 * 59.99914 * 15 14 12 42 42 H 0.97002 * 120.00219 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.1357 -1.2093 2.1553 7 6 1.5959 -1.8616 3.2842 8 6 2.9544 -2.0162 3.4916 9 6 3.8558 -1.5238 2.5687 10 6 3.3970 -0.8645 1.4356 11 7 4.3078 -0.3612 0.5001 12 6 5.6252 -0.6074 0.6424 13 8 6.0331 -1.1705 1.6362 14 6 6.5908 -0.1887 -0.4361 15 6 8.0113 -0.5888 -0.0324 16 6 8.9768 -0.1706 -1.1113 17 1 8.6136 0.3307 -1.9962 18 6 10.3239 -0.4272 -0.9681 19 7 10.7662 -1.0373 0.1097 20 14 11.5208 0.0917 -2.3051 21 1 10.7762 0.7541 -3.4061 22 1 12.5149 1.0387 -1.7392 23 1 12.2227 -1.1057 -2.8331 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1246 1.4444 0.1087 28 1 1.7681 1.9240 -0.9394 29 1 1.5906 1.9868 0.8306 30 1 1.6003 -1.7174 -1.2986 31 1 1.7573 -0.1549 -2.1366 32 1 3.1258 -0.8053 -1.2025 33 1 0.0743 -1.0896 1.9964 34 1 0.8928 -2.2511 4.0056 35 1 3.3107 -2.5259 4.3747 36 1 4.9165 -1.6488 2.7290 37 1 3.9910 0.1649 -0.2507 38 1 6.3266 -0.6816 -1.3717 39 1 6.5415 0.8921 -0.5683 40 1 8.2756 -0.0959 0.9032 41 1 8.0607 -1.6696 0.0998 42 1 11.7140 -1.2175 0.2106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291050173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = -27.730557 kcal Electronic energy + Delta-G solvation = -21353.061257 eV Core-core repulsion = 18297.385001 eV Total energy + Delta-G solvation = -3055.676256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11805 -39.99845 -37.32148 -35.85273 -35.55961 -33.18587 -31.08030 -30.44128 -28.35419 -28.17396 -27.66486 -24.42498 -23.88361 -22.68686 -21.50794 -20.40557 -18.78151 -18.43567 -17.69455 -16.88988 -16.75044 -16.46476 -15.63445 -15.50735 -15.19134 -14.93334 -14.75281 -14.67490 -14.40147 -14.10976 -13.76084 -13.30959 -13.21092 -12.95270 -12.85911 -12.80850 -12.58573 -12.46382 -12.41793 -11.98423 -11.88234 -11.69481 -11.64617 -11.58965 -11.47850 -11.27111 -10.58303 -10.21990 -9.68040 -8.90966 -8.19004 -6.32888 0.34618 0.51078 1.42482 1.43561 1.56789 1.61373 2.03718 2.43145 2.91784 3.14619 3.64154 3.72251 3.82956 4.08872 4.19923 4.26695 4.32548 4.39882 4.46991 4.53992 4.60144 4.67201 4.70180 4.84697 4.87229 4.98094 4.99460 5.04701 5.05665 5.19037 5.27721 5.33946 5.40580 5.47982 5.51444 5.54271 5.59417 5.65287 5.71173 5.83118 6.15823 6.18883 6.48746 6.85264 7.14208 7.37500 8.93786 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003945 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.801414 B = 7096.147039 C = 7945.479081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.155 4.155 5 C -0.115 4.115 6 C -0.099 4.099 7 C -0.146 4.146 8 C -0.114 4.114 9 C -0.205 4.205 10 C 0.140 3.860 11 N -0.657 5.657 12 C 0.505 3.495 13 O -0.550 6.550 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.425 0.575 38 H 0.108 0.892 39 H 0.109 0.891 40 H -0.014 1.014 41 H -0.015 1.015 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.011 3.524 -1.645 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.209 4.209 4 C -0.212 4.212 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.165 4.165 8 C -0.133 4.133 9 C -0.225 4.225 10 C 0.044 3.956 11 N -0.306 5.306 12 C 0.296 3.704 13 O -0.429 6.429 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.580 4.580 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.271 0.729 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.004 0.996 41 H 0.003 0.997 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.516 3.104 -0.971 24.731 hybrid contribution 1.229 0.022 -0.253 1.255 sum -23.288 3.126 -1.224 23.528 Atomic orbital electron populations 1.21907 0.91807 1.02630 1.03030 1.19536 0.97728 0.94462 0.91130 1.22108 1.00218 0.94889 1.03671 1.22146 1.00639 1.01163 0.97273 1.19822 0.89933 1.02971 0.99012 1.21305 1.00487 0.96921 0.93018 1.21436 0.95140 1.00934 0.98987 1.21332 0.93860 0.99233 0.98862 1.22707 1.03952 1.01057 0.94779 1.18053 0.89462 0.97584 0.90453 1.44263 1.05511 1.52808 1.28038 1.21741 0.83109 0.77395 0.88124 1.90337 1.78345 1.42602 1.31574 1.21712 0.93792 1.03789 0.96572 1.18699 0.90574 0.94852 0.95441 1.21715 0.92582 1.38403 1.05301 0.90496 1.26113 1.00936 0.95023 0.98242 1.70177 1.15047 1.42952 1.29501 0.85284 0.78268 0.77914 0.78843 1.17548 1.20671 1.20705 0.91585 0.90797 0.91812 0.93846 0.89639 0.91905 0.92291 0.89704 0.93565 0.82500 0.83525 0.85302 0.83261 0.72934 0.87342 0.87275 0.99564 0.99651 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.13 71.98 0.51 -1.07 16 2 C -0.03 -0.48 0.75 -52.93 -0.04 -0.52 16 3 C -0.15 -2.41 8.17 71.98 0.59 -1.82 16 4 C -0.15 -2.59 8.16 71.98 0.59 -2.00 16 5 C -0.11 -2.67 4.77 -19.74 -0.09 -2.76 16 6 C -0.10 -2.00 8.97 22.25 0.20 -1.80 16 7 C -0.15 -3.19 10.04 22.29 0.22 -2.96 16 8 C -0.11 -3.20 10.04 22.25 0.22 -2.98 16 9 C -0.21 -7.19 9.06 22.39 0.20 -6.99 16 10 C 0.14 4.31 6.20 38.15 0.24 4.55 16 11 N -0.66 -20.06 3.76 -303.49 -1.14 -21.20 16 12 C 0.51 20.01 7.77 87.65 0.68 20.69 16 13 O -0.55 -26.62 12.38 -3.07 -0.04 -26.65 16 14 C -0.12 -4.74 5.64 29.85 0.17 -4.57 16 15 C 0.04 2.31 4.26 29.85 0.13 2.44 16 16 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 19 N -0.94 -59.14 13.29 21.45 0.28 -58.86 16 20 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 21 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.07 0.69 7.44 -2.39 -0.02 0.68 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.70 7.58 -2.39 -0.02 0.68 16 27 H 0.04 0.82 5.21 -2.39 -0.01 0.81 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.92 5.06 -2.39 -0.01 0.91 16 33 H 0.16 2.13 5.89 -2.91 -0.02 2.11 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.15 6.39 4.51 -63.74 -0.29 6.11 16 37 H 0.43 10.17 3.70 -92.71 -0.34 9.82 16 38 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 40 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 41 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.40 330.58 5.84 -68.56 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.40 Total: 22.06 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.31 Total: -29.95 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -0.86 Total: -80.06 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.40 5.84 -68.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291050173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.831 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds