Wall clock time and date at job start Mon Mar 30 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47335 * 2 1 4 4 C 1.38114 * 120.03611 * 264.99708 * 3 2 1 5 5 C 1.38282 * 120.06866 * 180.27651 * 4 3 2 6 6 C 1.38284 * 120.14289 * 359.49005 * 5 4 3 7 7 C 1.38106 * 120.07040 * 0.51295 * 6 5 4 8 8 C 1.50697 * 120.03617 * 179.76738 * 7 6 5 9 9 C 1.53005 * 109.46734 * 298.11740 * 8 7 6 10 10 C 1.38873 * 119.92882 * 359.74092 * 7 6 5 11 11 N 1.39928 * 120.07200 * 180.02562 * 10 7 6 12 12 C 1.34775 * 120.00211 * 312.08987 * 11 10 7 13 13 O 1.21285 * 119.99571 * 357.43691 * 12 11 10 14 14 C 1.50696 * 119.99943 * 177.44035 * 12 11 10 15 15 C 1.53006 * 109.46918 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46918 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00580 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00201 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00562 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99594 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46946 * 90.00296 * 20 18 16 22 22 H 1.48500 * 109.47098 * 209.99914 * 20 18 16 23 23 H 1.48496 * 109.47186 * 330.00032 * 20 18 16 24 24 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 300.00096 * 1 2 3 26 26 H 1.09006 * 109.46767 * 59.99741 * 1 2 3 27 27 H 1.09002 * 109.46912 * 239.99904 * 2 1 3 28 28 H 1.08999 * 109.46958 * 119.99934 * 2 1 3 29 29 H 1.07997 * 119.96683 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.92737 * 179.75025 * 5 4 3 31 31 H 1.07999 * 119.96146 * 180.23261 * 6 5 4 32 32 H 1.08992 * 109.47548 * 58.11655 * 8 7 6 33 33 H 1.08997 * 109.47106 * 178.12381 * 8 7 6 34 34 H 1.09000 * 109.47352 * 307.07061 * 9 8 7 35 35 H 1.09000 * 109.46873 * 67.08054 * 9 8 7 36 36 H 1.09000 * 109.46833 * 187.08022 * 9 8 7 37 37 H 0.96999 * 119.99738 * 132.08035 * 11 10 7 38 38 H 1.08998 * 109.46900 * 299.99054 * 14 12 11 39 39 H 1.08995 * 109.47214 * 59.99876 * 14 12 11 40 40 H 1.08998 * 109.46557 * 299.99257 * 15 14 12 41 41 H 1.08995 * 109.47285 * 59.99913 * 15 14 12 42 42 H 0.96998 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1911 5 6 2.8276 3.3395 -1.1914 6 6 2.9565 4.0312 -0.0009 7 6 2.6295 3.4199 1.1935 8 6 2.7752 4.1727 2.4908 9 6 4.2435 4.5489 2.6999 10 6 2.1657 2.1109 1.1977 11 7 1.8331 1.4888 2.4061 12 6 2.6804 1.5520 3.4523 13 8 3.7516 2.1081 3.3323 14 6 2.2969 0.9317 4.7710 15 6 3.4261 1.1432 5.7816 16 6 3.0429 0.5223 7.1002 17 1 2.0892 0.0268 7.2070 18 6 3.9097 0.5868 8.1704 19 7 3.5752 0.0455 9.3213 20 14 5.5596 1.4433 7.9856 21 1 5.4139 2.8791 8.3360 22 1 6.5502 0.8105 8.8930 23 1 6.0261 1.3213 6.5811 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2577 1.5017 -2.1229 30 1 3.0879 3.8184 -2.1238 31 1 3.3176 5.0491 -0.0049 32 1 2.1697 5.0782 2.4555 33 1 2.4405 3.5436 3.3155 34 1 4.8635 3.6569 2.6101 35 1 4.5429 5.2771 1.9461 36 1 4.3701 4.9807 3.6927 37 1 0.9925 1.0122 2.4909 38 1 1.3856 1.4007 5.1418 39 1 2.1265 -0.1361 4.6343 40 1 4.3377 0.6745 5.4111 41 1 3.5961 2.2111 5.9182 42 1 4.1852 0.0905 10.0741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291203615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:52 Heat of formation + Delta-G solvation = -24.853285 kcal Electronic energy + Delta-G solvation = -21596.503466 eV Core-core repulsion = 18540.951978 eV Total energy + Delta-G solvation = -3055.551488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83929 -38.51149 -35.23777 -34.36675 -33.51574 -32.59967 -31.30822 -29.08520 -28.77549 -26.16564 -24.29357 -23.63802 -22.06017 -20.84519 -20.25590 -19.61432 -17.54244 -17.21294 -16.45653 -15.87344 -15.50845 -14.84886 -14.34547 -14.18920 -13.93661 -13.87560 -13.57708 -13.35589 -13.16118 -12.62568 -12.58928 -12.31785 -12.14902 -11.91985 -11.54068 -11.47106 -11.22956 -11.07757 -10.99446 -10.58669 -10.45701 -10.21265 -10.04581 -9.87257 -9.78198 -9.26821 -9.20627 -8.57215 -8.53321 -8.08058 -6.05275 -4.04374 1.30590 1.38775 2.99724 3.35084 3.35968 3.42918 3.52936 3.76202 4.48506 4.62408 4.72195 4.93704 5.04711 5.15620 5.19359 5.28732 5.30270 5.39055 5.46444 5.54818 5.58011 5.72886 5.75600 5.83158 5.84682 5.98690 6.02233 6.03826 6.10709 6.22569 6.29086 6.46650 6.49855 6.60585 6.61824 6.68736 6.79957 7.12656 7.31828 7.39206 7.62787 7.76106 8.46806 8.58831 8.97531 9.57557 11.07545 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004808 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.876499 B = 5821.925429 C = 6715.327648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.113 4.113 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.069 4.069 8 C -0.082 4.082 9 C -0.133 4.133 10 C 0.153 3.847 11 N -0.686 5.686 12 C 0.504 3.496 13 O -0.508 6.508 14 C -0.122 4.122 15 C 0.003 3.997 16 C -0.526 4.526 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.903 5.903 20 Si 0.876 3.124 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.406 0.594 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 4.591 -21.579 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.132 4.132 5 C -0.149 4.149 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.119 4.119 9 C -0.190 4.190 10 C 0.059 3.941 11 N -0.335 5.335 12 C 0.294 3.706 13 O -0.382 6.382 14 C -0.161 4.161 15 C -0.035 4.035 16 C -0.564 4.564 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.243 0.757 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.867 4.940 -21.384 22.480 hybrid contribution 0.422 0.198 0.019 0.466 sum -4.445 5.138 -21.365 22.419 Atomic orbital electron populations 1.21753 0.94765 1.01815 1.02029 1.20482 0.95999 0.92593 1.03168 1.19791 1.02202 0.95953 0.92302 1.20785 1.00397 0.95196 0.96797 1.21028 1.01056 0.94953 0.97824 1.20842 1.00477 0.99981 0.91585 1.19895 0.98942 0.92366 0.95878 1.20688 0.98192 0.98528 0.94518 1.21661 0.95733 1.01464 1.00155 1.17407 1.00382 0.90979 0.85327 1.43829 1.23060 1.55837 1.10760 1.21661 0.84174 0.78995 0.85769 1.90718 1.22627 1.41311 1.83580 1.21703 1.02897 1.01080 0.90463 1.19361 0.93282 0.97424 0.93386 1.21094 1.04961 1.36581 0.93740 0.90946 1.24959 0.98221 0.94905 0.95041 1.69906 1.36996 1.45274 1.01991 0.86811 0.84112 0.79948 0.78771 1.20233 1.21451 1.18525 0.92178 0.92806 0.92503 0.90954 0.90807 0.86169 0.86292 0.86114 0.92469 0.90300 0.90479 0.94269 0.93058 0.75748 0.89480 0.89435 0.95768 0.96208 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.87 37.16 0.37 -0.81 16 2 C -0.09 -0.83 5.58 -27.88 -0.16 -0.98 16 3 C -0.10 -1.20 5.15 -104.43 -0.54 -1.74 16 4 C -0.11 -1.23 9.68 -39.61 -0.38 -1.61 16 5 C -0.13 -1.42 10.04 -39.55 -0.40 -1.81 16 6 C -0.11 -1.37 9.32 -39.61 -0.37 -1.74 16 7 C -0.07 -0.99 4.90 -104.44 -0.51 -1.50 16 8 C -0.08 -1.25 5.21 -27.88 -0.15 -1.39 16 9 C -0.13 -2.08 8.84 37.16 0.33 -1.75 16 10 C 0.15 2.14 5.95 -83.69 -0.50 1.64 16 11 N -0.69 -9.45 4.26 -9.86 -0.04 -9.50 16 12 C 0.50 8.75 5.77 -10.99 -0.06 8.68 16 13 O -0.51 -10.31 10.41 5.55 0.06 -10.26 16 14 C -0.12 -2.26 5.64 -27.88 -0.16 -2.41 16 15 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 16 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 17 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 20 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 7.23 -51.93 -0.38 0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.62 8.05 -51.93 -0.42 0.21 16 28 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.30 7.78 -52.49 -0.41 0.89 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.34 4.47 -51.93 -0.23 1.11 16 34 H 0.08 1.40 6.28 -51.93 -0.33 1.08 16 35 H 0.04 0.52 7.76 -51.93 -0.40 0.11 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.41 4.45 7.62 -40.82 -0.31 4.14 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -32.41 334.04 -8.49 -40.90 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.60 Total: 1.75 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.05 Total: -18.61 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.73 Total: -36.50 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.41 -8.49 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291203615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.047 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds