Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47335 * 2 1 4 4 C 1.38114 * 120.03611 * 264.99708 * 3 2 1 5 5 C 1.38282 * 120.06866 * 180.27651 * 4 3 2 6 6 C 1.38284 * 120.14289 * 359.49005 * 5 4 3 7 7 C 1.38106 * 120.07040 * 0.51295 * 6 5 4 8 8 C 1.50697 * 120.03617 * 179.76738 * 7 6 5 9 9 C 1.53005 * 109.46734 * 298.11740 * 8 7 6 10 10 C 1.38873 * 119.92882 * 359.74092 * 7 6 5 11 11 N 1.39928 * 120.07200 * 180.02562 * 10 7 6 12 12 C 1.34775 * 120.00211 * 312.08987 * 11 10 7 13 13 O 1.21285 * 119.99571 * 357.43691 * 12 11 10 14 14 C 1.50696 * 119.99943 * 177.44035 * 12 11 10 15 15 C 1.53006 * 109.46918 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46918 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00580 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00201 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00562 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99594 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46946 * 90.00296 * 20 18 16 22 22 H 1.48500 * 109.47098 * 209.99914 * 20 18 16 23 23 H 1.48496 * 109.47186 * 330.00032 * 20 18 16 24 24 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 300.00096 * 1 2 3 26 26 H 1.09006 * 109.46767 * 59.99741 * 1 2 3 27 27 H 1.09002 * 109.46912 * 239.99904 * 2 1 3 28 28 H 1.08999 * 109.46958 * 119.99934 * 2 1 3 29 29 H 1.07997 * 119.96683 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.92737 * 179.75025 * 5 4 3 31 31 H 1.07999 * 119.96146 * 180.23261 * 6 5 4 32 32 H 1.08992 * 109.47548 * 58.11655 * 8 7 6 33 33 H 1.08997 * 109.47106 * 178.12381 * 8 7 6 34 34 H 1.09000 * 109.47352 * 307.07061 * 9 8 7 35 35 H 1.09000 * 109.46873 * 67.08054 * 9 8 7 36 36 H 1.09000 * 109.46833 * 187.08022 * 9 8 7 37 37 H 0.96999 * 119.99738 * 132.08035 * 11 10 7 38 38 H 1.08998 * 109.46900 * 299.99054 * 14 12 11 39 39 H 1.08995 * 109.47214 * 59.99876 * 14 12 11 40 40 H 1.08998 * 109.46557 * 299.99257 * 15 14 12 41 41 H 1.08995 * 109.47285 * 59.99913 * 15 14 12 42 42 H 0.96998 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1911 5 6 2.8276 3.3395 -1.1914 6 6 2.9565 4.0312 -0.0009 7 6 2.6295 3.4199 1.1935 8 6 2.7752 4.1727 2.4908 9 6 4.2435 4.5489 2.6999 10 6 2.1657 2.1109 1.1977 11 7 1.8331 1.4888 2.4061 12 6 2.6804 1.5520 3.4523 13 8 3.7516 2.1081 3.3323 14 6 2.2969 0.9317 4.7710 15 6 3.4261 1.1432 5.7816 16 6 3.0429 0.5223 7.1002 17 1 2.0892 0.0268 7.2070 18 6 3.9097 0.5868 8.1704 19 7 3.5752 0.0455 9.3213 20 14 5.5596 1.4433 7.9856 21 1 5.4139 2.8791 8.3360 22 1 6.5502 0.8105 8.8930 23 1 6.0261 1.3213 6.5811 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2577 1.5017 -2.1229 30 1 3.0879 3.8184 -2.1238 31 1 3.3176 5.0491 -0.0049 32 1 2.1697 5.0782 2.4555 33 1 2.4405 3.5436 3.3155 34 1 4.8635 3.6569 2.6101 35 1 4.5429 5.2771 1.9461 36 1 4.3701 4.9807 3.6927 37 1 0.9925 1.0122 2.4909 38 1 1.3856 1.4007 5.1418 39 1 2.1265 -0.1361 4.6343 40 1 4.3377 0.6745 5.4111 41 1 3.5961 2.2111 5.9182 42 1 4.1852 0.0905 10.0741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291203615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = -43.072133 kcal Electronic energy + Delta-G solvation = -21597.293495 eV Core-core repulsion = 18540.951978 eV Total energy + Delta-G solvation = -3056.341516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97025 -39.65880 -36.21731 -35.72467 -35.27844 -33.69486 -33.14952 -30.14759 -29.74798 -27.93110 -25.27142 -24.70209 -23.45458 -22.15833 -21.43820 -20.81286 -19.25083 -18.43710 -17.92685 -17.24305 -16.42395 -16.26158 -15.97702 -15.36746 -15.12209 -14.90067 -14.84221 -14.64246 -14.37652 -14.25970 -13.76016 -13.45928 -13.39915 -13.01140 -12.91354 -12.86408 -12.44333 -12.18081 -12.07003 -12.00116 -11.83266 -11.79450 -11.62174 -11.53773 -11.40059 -10.99384 -10.78440 -10.65657 -9.48053 -9.09754 -8.31996 -6.34770 0.36127 0.46574 1.32154 1.34510 1.48900 1.68212 2.18641 2.33966 2.83854 3.04119 3.75892 3.85312 3.91952 4.06315 4.25150 4.34957 4.35777 4.44983 4.46719 4.50142 4.54091 4.57226 4.65032 4.72100 4.83541 4.95705 4.98969 5.10283 5.12612 5.14280 5.23487 5.33180 5.40466 5.43457 5.44077 5.55019 5.57119 5.61112 5.68158 5.72120 6.16277 6.22992 6.49863 6.72001 7.30085 7.30715 8.83795 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004808 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.876499 B = 5821.925429 C = 6715.327648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.090 4.090 8 C -0.081 4.081 9 C -0.126 4.126 10 C 0.124 3.876 11 N -0.668 5.668 12 C 0.509 3.491 13 O -0.541 6.541 14 C -0.115 4.115 15 C 0.010 3.990 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.944 5.944 20 Si 0.937 3.063 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.261 1.261 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.419 0.581 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 5.079 -24.449 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.133 4.133 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.092 4.092 8 C -0.118 4.118 9 C -0.184 4.184 10 C 0.031 3.969 11 N -0.316 5.316 12 C 0.299 3.701 13 O -0.418 6.418 14 C -0.155 4.155 15 C -0.028 4.028 16 C -0.567 4.567 17 H 0.068 0.932 18 C -0.182 4.182 19 N -0.585 5.585 20 Si 0.761 3.239 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.185 1.185 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.258 0.742 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.122 5.420 -24.283 25.403 hybrid contribution 0.413 0.027 0.824 0.922 sum -4.709 5.447 -23.460 24.540 Atomic orbital electron populations 1.21734 0.93437 1.02678 1.02169 1.20528 0.97093 0.91246 1.03304 1.20077 1.01525 0.96855 0.91931 1.21182 0.99284 0.95386 0.97446 1.21414 0.99490 0.94942 0.98413 1.21068 1.00537 1.00814 0.91472 1.19985 1.00237 0.92894 0.96086 1.20608 0.97788 0.98825 0.94583 1.21573 0.95853 1.00588 1.00345 1.17635 1.02253 0.91391 0.85623 1.43468 1.22829 1.55161 1.10149 1.21236 0.84131 0.78656 0.86036 1.90723 1.24108 1.42913 1.84081 1.21502 1.01256 1.02453 0.90283 1.19180 0.94676 0.96065 0.92916 1.21428 1.03944 1.35819 0.95473 0.93229 1.25769 1.01811 0.95783 0.94849 1.70019 1.38529 1.46997 1.02905 0.85853 0.80107 0.79211 0.78684 1.19383 1.20528 1.18519 0.90975 0.93169 0.91877 0.89476 0.92034 0.83332 0.83341 0.84812 0.91174 0.92587 0.93305 0.91986 0.94028 0.74237 0.88068 0.87990 0.97147 0.97107 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.87 71.98 0.71 -1.23 16 2 C -0.08 -1.44 5.58 29.85 0.17 -1.27 16 3 C -0.10 -2.21 5.15 -19.74 -0.10 -2.31 16 4 C -0.11 -2.10 9.68 22.25 0.22 -1.88 16 5 C -0.12 -2.29 10.04 22.29 0.22 -2.07 16 6 C -0.12 -2.73 9.32 22.25 0.21 -2.52 16 7 C -0.09 -2.50 4.90 -19.74 -0.10 -2.60 16 8 C -0.08 -2.44 5.21 29.85 0.16 -2.28 16 9 C -0.13 -3.96 8.84 71.98 0.64 -3.32 16 10 C 0.12 3.33 5.95 38.15 0.23 3.56 16 11 N -0.67 -17.92 4.26 -303.50 -1.29 -19.21 16 12 C 0.51 17.67 5.77 87.66 0.51 18.18 16 13 O -0.54 -22.30 10.41 -3.05 -0.03 -22.33 16 14 C -0.12 -4.27 5.64 29.85 0.17 -4.10 16 15 C 0.01 0.47 3.33 29.85 0.10 0.57 16 16 C -0.53 -30.26 9.66 25.60 0.25 -30.02 16 17 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 18 C 0.02 0.92 5.47 84.65 0.46 1.39 16 19 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 20 Si 0.94 46.66 27.47 68.60 1.88 48.54 16 21 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.26 -12.90 6.54 99.48 0.65 -12.25 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.71 7.23 -2.39 -0.02 0.69 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 28 H 0.06 1.21 7.62 -2.39 -0.02 1.19 16 29 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.13 2.56 7.78 -2.91 -0.02 2.54 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.93 4.47 -2.39 -0.01 1.92 16 34 H 0.05 1.81 6.28 -2.39 -0.01 1.79 16 35 H 0.06 1.58 7.76 -2.39 -0.02 1.57 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 8.72 7.62 -92.71 -0.71 8.02 16 38 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.01 0.52 7.15 -2.39 -0.02 0.51 16 41 H 0.01 0.53 7.53 -2.39 -0.02 0.52 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -70.86 334.04 4.93 -65.93 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.72 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.83 Total: -29.91 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -0.99 Total: -77.95 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.03 Total: -22.33 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.54 kcal Total: -70.86 4.93 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291203615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.854 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds