Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46713 * 2 1 4 4 C 1.38289 * 119.92993 * 90.00286 * 3 2 1 5 5 C 1.38102 * 120.07074 * 180.02562 * 4 3 2 6 6 C 1.38881 * 119.93358 * 359.97438 * 5 4 3 7 7 N 1.39920 * 120.06808 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00425 * 67.70651 * 7 6 5 9 9 C 1.53001 * 109.47286 * 89.99209 * 8 7 6 10 10 C 1.34785 * 119.99709 * 247.69828 * 7 6 5 11 11 O 1.21277 * 119.99739 * 4.83808 * 10 7 6 12 12 C 1.50702 * 119.99692 * 184.83564 * 10 7 6 13 13 C 1.52999 * 109.46926 * 180.02562 * 12 10 7 14 14 C 1.50698 * 109.47189 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99809 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47122 * 59.99347 * 18 16 14 20 20 H 1.48497 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46867 * 299.99599 * 18 16 14 22 22 C 1.38871 * 119.85370 * 0.25026 * 6 5 4 23 23 C 1.38106 * 119.92963 * 359.51924 * 22 6 5 24 24 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47237 * 299.99686 * 1 2 3 26 26 H 1.09006 * 109.47121 * 60.00092 * 1 2 3 27 27 H 1.09002 * 109.46802 * 240.00380 * 2 1 3 28 28 H 1.08992 * 109.46987 * 119.99879 * 2 1 3 29 29 H 1.07998 * 119.96165 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.03666 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.46875 * 329.99840 * 8 7 6 32 32 H 1.08995 * 109.47626 * 209.99549 * 8 7 6 33 33 H 1.09003 * 109.47287 * 59.99817 * 9 8 7 34 34 H 1.09002 * 109.47507 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47354 * 300.00264 * 9 8 7 36 36 H 1.09001 * 109.47293 * 300.00339 * 12 10 7 37 37 H 1.09005 * 109.46981 * 59.99992 * 12 10 7 38 38 H 1.09001 * 109.47198 * 300.00136 * 13 12 10 39 39 H 1.08996 * 109.47019 * 59.99724 * 13 12 10 40 40 H 0.97004 * 120.00028 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03102 * 179.74968 * 22 6 5 42 42 H 1.08002 * 119.96476 * 180.22393 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7220 3.3736 1.2019 6 6 2.9539 4.0298 0.0000 7 7 3.4192 5.3494 0.0002 8 6 4.7696 5.6499 0.4820 9 6 5.7564 5.5724 -0.6847 10 6 2.6249 6.3440 -0.4432 11 8 1.4780 6.1088 -0.7595 12 6 3.1621 7.7483 -0.5456 13 6 2.0654 8.6767 -1.0709 14 6 2.6027 10.0809 -1.1740 15 1 3.6241 10.2902 -0.8926 16 6 1.7899 11.0985 -1.6267 17 7 0.5459 10.8437 -1.9689 18 14 2.4558 12.8393 -1.7538 19 1 3.6108 12.8605 -2.6869 20 1 1.3913 13.7404 -2.2637 21 1 2.8947 13.3005 -0.4121 22 6 2.7175 3.3753 -1.2018 23 6 2.2623 2.0714 -1.1984 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.0822 1.5604 2.1327 30 1 2.9011 3.8813 2.1382 31 1 5.0525 4.9255 1.2458 32 1 4.7887 6.6531 0.9079 33 1 5.4736 6.2967 -1.4486 34 1 6.7613 5.7956 -0.3261 35 1 5.7375 4.5691 -1.1106 36 1 3.4837 8.0871 0.4392 37 1 4.0104 7.7637 -1.2300 38 1 1.7434 8.3381 -2.0557 39 1 1.2174 8.6611 -0.3863 40 1 -0.0258 11.5596 -2.2876 41 1 2.8930 3.8842 -2.1380 42 1 2.0817 1.5607 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291227216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -30.157528 kcal Electronic energy + Delta-G solvation = -20871.604395 eV Core-core repulsion = 17815.822898 eV Total energy + Delta-G solvation = -3055.781497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34860 -38.59967 -35.91540 -33.91988 -33.35552 -31.08865 -30.94731 -30.51251 -28.37364 -25.83899 -23.89774 -23.54525 -22.41326 -21.83837 -20.60403 -18.79613 -17.23007 -16.76814 -15.88300 -15.71848 -15.59451 -14.64496 -14.50342 -14.31040 -13.82036 -13.74250 -13.56361 -13.38829 -13.28629 -12.85300 -12.60709 -12.23314 -12.09315 -11.90408 -11.83440 -11.42071 -11.18179 -11.11354 -11.04086 -10.94039 -10.87898 -10.61781 -9.92748 -9.65116 -9.26047 -9.12205 -8.95791 -8.90356 -8.32401 -8.12845 -5.95870 -4.00620 1.28971 1.43449 3.15087 3.20445 3.34316 3.39177 3.40857 3.73507 4.46924 4.67236 4.74476 4.93384 5.01005 5.06285 5.19847 5.21942 5.29593 5.37558 5.38855 5.42437 5.44805 5.56686 5.59937 5.71007 5.82162 5.82951 5.86933 6.04789 6.05345 6.13455 6.19800 6.27054 6.31500 6.57547 6.59642 6.73731 6.85751 7.23152 7.64900 7.73803 7.85203 8.06765 8.37799 8.71464 9.07470 9.62867 11.15034 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.003592 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.813129 B = 7794.210774 C = 8415.975693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.109 4.109 5 C -0.122 4.122 6 C 0.152 3.848 7 N -0.588 5.588 8 C 0.109 3.891 9 C -0.173 4.173 10 C 0.513 3.487 11 O -0.518 6.518 12 C -0.126 4.126 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -20.271 5.752 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.142 4.142 6 C 0.062 3.938 7 N -0.320 5.320 8 C -0.013 4.013 9 C -0.231 4.231 10 C 0.304 3.696 11 O -0.391 6.391 12 C -0.166 4.166 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.126 4.126 23 C -0.126 4.126 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.434 -20.247 5.502 22.259 hybrid contribution 0.386 1.063 -0.086 1.134 sum 7.820 -19.184 5.416 21.413 Atomic orbital electron populations 1.21763 0.94760 1.01466 1.02554 1.20505 0.96191 0.92637 1.02547 1.19867 0.99878 0.96391 0.93151 1.20820 1.00120 0.94375 0.97496 1.21207 1.00382 0.95286 0.97326 1.17631 0.98323 0.84903 0.92979 1.45936 1.15475 1.04533 1.66079 1.21602 0.80639 1.02502 0.96528 1.22228 0.98959 1.02566 0.99349 1.21761 0.85398 0.87440 0.75026 1.90692 1.17770 1.83807 1.46849 1.21936 1.02564 0.89492 1.02598 1.18912 0.92216 0.91810 0.97125 1.21165 0.97947 0.93046 1.44444 0.92631 1.25024 0.94854 0.99035 0.95421 1.69990 1.06178 1.32716 1.43905 0.86652 0.78507 0.84387 0.78381 1.20241 1.21280 1.20232 1.21260 0.99372 0.94291 0.97643 1.20869 0.99793 0.94365 0.97576 0.92570 0.92487 0.92399 0.91188 0.91230 0.86053 0.85981 0.90720 0.89403 0.91624 0.91464 0.92579 0.90150 0.89973 0.95850 0.95836 0.92876 0.86049 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -1.05 5.14 -104.59 -0.54 -1.59 16 4 C -0.11 -1.26 9.69 -39.61 -0.38 -1.65 16 5 C -0.12 -1.63 9.68 -39.39 -0.38 -2.01 16 6 C 0.15 2.33 4.76 -83.69 -0.40 1.93 16 7 N -0.59 -9.30 2.52 -113.45 -0.29 -9.59 16 8 C 0.11 1.29 5.85 -4.04 -0.02 1.27 16 9 C -0.17 -1.85 10.23 37.16 0.38 -1.47 16 10 C 0.51 10.40 7.52 -10.98 -0.08 10.32 16 11 O -0.52 -12.79 15.73 5.56 0.09 -12.70 16 12 C -0.13 -2.61 4.30 -27.88 -0.12 -2.73 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -1.58 9.53 -39.40 -0.38 -1.95 16 23 C -0.11 -1.34 9.69 -39.61 -0.38 -1.73 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 32 H 0.09 1.00 6.47 -51.93 -0.34 0.66 16 33 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 37 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -34.13 350.42 -8.71 -42.84 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.87 Total: -1.49 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.64 Total: -14.18 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.45 Total: -36.43 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.13 -8.71 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291227216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.685 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds