Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46713 * 2 1 4 4 C 1.38289 * 119.92993 * 90.00286 * 3 2 1 5 5 C 1.38102 * 120.07074 * 180.02562 * 4 3 2 6 6 C 1.38881 * 119.93358 * 359.97438 * 5 4 3 7 7 N 1.39920 * 120.06808 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00425 * 67.70651 * 7 6 5 9 9 C 1.53001 * 109.47286 * 89.99209 * 8 7 6 10 10 C 1.34785 * 119.99709 * 247.69828 * 7 6 5 11 11 O 1.21277 * 119.99739 * 4.83808 * 10 7 6 12 12 C 1.50702 * 119.99692 * 184.83564 * 10 7 6 13 13 C 1.52999 * 109.46926 * 180.02562 * 12 10 7 14 14 C 1.50698 * 109.47189 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99937 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99809 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47122 * 59.99347 * 18 16 14 20 20 H 1.48497 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46867 * 299.99599 * 18 16 14 22 22 C 1.38871 * 119.85370 * 0.25026 * 6 5 4 23 23 C 1.38106 * 119.92963 * 359.51924 * 22 6 5 24 24 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47237 * 299.99686 * 1 2 3 26 26 H 1.09006 * 109.47121 * 60.00092 * 1 2 3 27 27 H 1.09002 * 109.46802 * 240.00380 * 2 1 3 28 28 H 1.08992 * 109.46987 * 119.99879 * 2 1 3 29 29 H 1.07998 * 119.96165 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.03666 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.46875 * 329.99840 * 8 7 6 32 32 H 1.08995 * 109.47626 * 209.99549 * 8 7 6 33 33 H 1.09003 * 109.47287 * 59.99817 * 9 8 7 34 34 H 1.09002 * 109.47507 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47354 * 300.00264 * 9 8 7 36 36 H 1.09001 * 109.47293 * 300.00339 * 12 10 7 37 37 H 1.09005 * 109.46981 * 59.99992 * 12 10 7 38 38 H 1.09001 * 109.47198 * 300.00136 * 13 12 10 39 39 H 1.08996 * 109.47019 * 59.99724 * 13 12 10 40 40 H 0.97004 * 120.00028 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.03102 * 179.74968 * 22 6 5 42 42 H 1.08002 * 119.96476 * 180.22393 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7220 3.3736 1.2019 6 6 2.9539 4.0298 0.0000 7 7 3.4192 5.3494 0.0002 8 6 4.7696 5.6499 0.4820 9 6 5.7564 5.5724 -0.6847 10 6 2.6249 6.3440 -0.4432 11 8 1.4780 6.1088 -0.7595 12 6 3.1621 7.7483 -0.5456 13 6 2.0654 8.6767 -1.0709 14 6 2.6027 10.0809 -1.1740 15 1 3.6241 10.2902 -0.8926 16 6 1.7899 11.0985 -1.6267 17 7 0.5459 10.8437 -1.9689 18 14 2.4558 12.8393 -1.7538 19 1 3.6108 12.8605 -2.6869 20 1 1.3913 13.7404 -2.2637 21 1 2.8947 13.3005 -0.4121 22 6 2.7175 3.3753 -1.2018 23 6 2.2623 2.0714 -1.1984 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.0822 1.5604 2.1327 30 1 2.9011 3.8813 2.1382 31 1 5.0525 4.9255 1.2458 32 1 4.7887 6.6531 0.9079 33 1 5.4736 6.2967 -1.4486 34 1 6.7613 5.7956 -0.3261 35 1 5.7375 4.5691 -1.1106 36 1 3.4837 8.0871 0.4392 37 1 4.0104 7.7637 -1.2300 38 1 1.7434 8.3381 -2.0557 39 1 1.2174 8.6611 -0.3863 40 1 -0.0258 11.5596 -2.2876 41 1 2.8930 3.8842 -2.1380 42 1 2.0817 1.5607 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291227216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -49.254096 kcal Electronic energy + Delta-G solvation = -20872.432484 eV Core-core repulsion = 17815.822898 eV Total energy + Delta-G solvation = -3056.609586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63469 -39.81123 -37.22562 -35.66156 -34.63816 -32.95258 -31.95232 -31.59717 -29.52513 -27.70070 -25.01891 -24.68166 -23.57144 -23.20218 -21.82011 -20.18770 -18.91043 -18.24361 -17.45054 -17.03061 -16.58597 -16.45025 -16.03485 -15.44138 -14.92246 -14.75807 -14.65280 -14.45925 -14.36459 -14.15901 -14.10148 -13.63293 -13.41271 -13.32084 -12.82320 -12.76219 -12.65137 -12.49654 -12.29453 -12.20956 -11.89353 -11.78747 -11.70681 -11.61745 -11.34136 -10.81932 -10.57188 -10.23101 -9.91617 -9.24668 -8.18802 -6.33536 0.25480 0.42329 1.41520 1.46383 1.54092 1.58808 1.94310 2.42502 2.72457 3.14013 3.78138 3.87720 3.89149 4.02599 4.04039 4.24997 4.33294 4.41661 4.43030 4.45485 4.50193 4.56821 4.58201 4.66080 4.75230 4.87789 4.97940 4.99987 5.05000 5.08910 5.15358 5.32991 5.35182 5.40799 5.46420 5.51302 5.58630 5.67029 5.70263 5.82647 6.11105 6.15412 6.27265 6.84256 7.20204 7.36897 8.93837 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.003592 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.813129 B = 7794.210774 C = 8415.975693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.089 4.089 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.573 5.573 8 C 0.100 3.900 9 C -0.167 4.167 10 C 0.512 3.488 11 O -0.578 6.578 12 C -0.112 4.112 13 C 0.044 3.956 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.129 4.129 23 C -0.113 4.113 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.104 0.896 38 H -0.021 1.021 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.102 0.898 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 -21.243 7.333 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.089 4.089 4 C -0.126 4.126 5 C -0.147 4.147 6 C 0.030 3.970 7 N -0.303 5.303 8 C -0.021 4.021 9 C -0.225 4.225 10 C 0.303 3.697 11 O -0.456 6.456 12 C -0.152 4.152 13 C 0.007 3.993 14 C -0.581 4.581 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.149 4.149 23 C -0.132 4.132 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.122 0.878 38 H -0.002 1.002 39 H -0.001 1.001 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.859 -21.256 7.111 24.486 hybrid contribution -0.355 1.218 -0.563 1.388 sum 9.503 -20.038 6.548 23.124 Atomic orbital electron populations 1.21768 0.94784 1.02480 1.01555 1.20575 0.95972 0.90771 1.04238 1.20269 0.98308 0.97784 0.92519 1.21208 0.98713 0.93737 0.98902 1.21400 1.00310 0.96106 0.96900 1.17881 1.00409 0.84615 0.94045 1.45805 1.16255 1.04095 1.64163 1.21978 0.78613 1.03855 0.97621 1.22182 1.00100 1.01859 0.98407 1.21608 0.84968 0.88196 0.74920 1.90661 1.20299 1.84675 1.49943 1.21687 1.00603 0.88806 1.04081 1.18680 0.93011 0.93607 0.94043 1.21660 0.98952 0.93465 1.44054 0.90413 1.26161 0.94958 1.04571 0.94740 1.70182 1.08074 1.34445 1.45121 0.85356 0.77936 0.77600 0.79249 1.18626 1.21371 1.18522 1.21290 1.00970 0.95608 0.96989 1.21117 0.99323 0.93583 0.99159 0.90587 0.93106 0.93827 0.89944 0.89159 0.83007 0.84673 0.87974 0.88571 0.93449 0.88538 0.92918 0.87525 0.87813 1.00209 1.00060 0.92837 0.87951 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.84 5.14 -19.84 -0.10 -1.95 16 4 C -0.11 -2.23 9.69 22.25 0.22 -2.02 16 5 C -0.13 -3.23 9.68 22.39 0.22 -3.01 16 6 C 0.12 3.71 4.76 38.16 0.18 3.89 16 7 N -0.57 -18.20 2.52 -631.24 -1.59 -19.79 16 8 C 0.10 2.17 5.85 86.38 0.50 2.68 16 9 C -0.17 -3.31 10.23 71.98 0.74 -2.57 16 10 C 0.51 21.59 7.52 87.66 0.66 22.25 16 11 O -0.58 -30.52 15.73 -3.02 -0.05 -30.57 16 12 C -0.11 -4.72 4.30 29.85 0.13 -4.59 16 13 C 0.04 2.53 4.26 29.85 0.13 2.66 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 17 N -0.94 -60.38 13.29 21.45 0.28 -60.09 16 18 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.13 -3.97 9.53 22.39 0.21 -3.76 16 23 C -0.11 -2.80 9.69 22.25 0.22 -2.58 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.10 1.71 7.86 -2.38 -0.02 1.69 16 32 H 0.10 1.95 6.47 -2.39 -0.02 1.93 16 33 H 0.05 1.11 6.95 -2.39 -0.02 1.09 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.11 3.89 7.26 -2.39 -0.02 3.87 16 37 H 0.10 3.88 6.95 -2.38 -0.02 3.87 16 38 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 39 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 40 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.10 3.42 8.06 -2.91 -0.02 3.39 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -79.13 350.42 6.33 -72.80 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.97 Total: 13.53 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.69 Total: -22.43 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.31 Total: -79.88 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -79.13 6.33 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291227216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.541 kcal (2) G-P(sol) polarization free energy of solvation -79.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds