Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46674 * 2 1 4 4 C 1.50691 * 109.47600 * 239.99979 * 2 1 3 5 5 C 1.38285 * 119.93177 * 59.71819 * 4 2 1 6 6 C 1.38112 * 120.07438 * 179.76902 * 5 4 2 7 7 C 1.38875 * 119.92439 * 0.51167 * 6 5 4 8 8 N 1.39928 * 120.06802 * 179.72327 * 7 6 5 9 9 C 1.46501 * 120.00009 * 112.85321 * 8 7 6 10 10 C 1.34771 * 119.99758 * 292.85181 * 8 7 6 11 11 O 1.21282 * 120.00522 * 5.28173 * 10 8 7 12 12 C 1.50703 * 119.99924 * 185.27554 * 10 8 7 13 13 C 1.52998 * 109.47574 * 180.02562 * 12 10 8 14 14 C 1.50691 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00237 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99877 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00298 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47572 * 60.00040 * 18 16 14 20 20 H 1.48509 * 109.47117 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47003 * 299.99505 * 18 16 14 22 22 C 1.38870 * 119.86131 * 359.74743 * 7 6 5 23 23 C 1.38119 * 119.92790 * 359.97438 * 22 7 6 24 24 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47088 * 300.00355 * 1 2 3 26 26 H 1.08997 * 109.46987 * 60.00230 * 1 2 3 27 27 H 1.09003 * 109.47318 * 119.99451 * 2 1 3 28 28 H 1.08997 * 109.47226 * 299.99623 * 3 2 1 29 29 H 1.09001 * 109.47210 * 60.00290 * 3 2 1 30 30 H 1.09002 * 109.46705 * 179.97438 * 3 2 1 31 31 H 1.08002 * 119.96190 * 0.03329 * 5 4 2 32 32 H 1.07994 * 120.03978 * 180.26119 * 6 5 4 33 33 H 1.09004 * 109.46634 * 89.99951 * 9 8 7 34 34 H 1.08996 * 109.47222 * 209.99943 * 9 8 7 35 35 H 1.09003 * 109.46853 * 330.00622 * 9 8 7 36 36 H 1.09000 * 109.47298 * 300.00484 * 12 10 8 37 37 H 1.09004 * 109.47020 * 60.00280 * 12 10 8 38 38 H 1.09000 * 109.47065 * 300.00458 * 13 12 10 39 39 H 1.09004 * 109.46856 * 60.00011 * 13 12 10 40 40 H 0.96993 * 120.00382 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.03559 * 179.97438 * 22 7 6 42 42 H 1.08004 * 119.95999 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7103 -1.2304 5 6 1.6928 -0.2401 -2.4856 6 6 2.1556 -0.8861 -3.6153 7 6 2.9541 -2.0153 -3.4895 8 7 3.4198 -2.6755 -4.6319 9 6 4.8507 -2.6744 -4.9464 10 6 2.5521 -3.3123 -5.4430 11 8 1.3595 -3.2333 -5.2368 12 6 3.0635 -4.1224 -6.6063 13 6 1.8815 -4.7354 -7.3599 14 6 2.3931 -5.5460 -8.5227 15 1 3.4551 -5.6172 -8.7057 16 6 1.5054 -6.1967 -9.3530 17 7 0.2121 -6.1096 -9.1305 18 14 2.1395 -7.2021 -10.7941 19 1 3.0211 -8.2861 -10.2915 20 1 0.9920 -7.7959 -11.5263 21 1 2.9091 -6.3228 -11.7105 22 6 3.2890 -2.4882 -2.2274 23 6 2.8277 -1.8342 -1.1017 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.0684 0.6358 -2.5828 32 1 1.8934 -0.5159 -4.5953 33 1 5.3263 -3.5357 -4.4772 34 1 4.9853 -2.7287 -6.0266 35 1 5.3049 -1.7582 -4.5690 36 1 3.6273 -3.4762 -7.2791 37 1 3.7119 -4.9175 -6.2381 38 1 1.3175 -5.3815 -6.6872 39 1 1.2335 -3.9400 -7.7281 40 1 -0.4125 -6.5676 -9.7144 41 1 3.9095 -3.3663 -2.1263 42 1 3.0876 -2.2018 -0.1199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291382670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -28.785412 kcal Electronic energy + Delta-G solvation = -20641.895487 eV Core-core repulsion = 17586.173489 eV Total energy + Delta-G solvation = -3055.721998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31375 -38.77576 -36.05575 -34.35414 -33.47154 -31.13824 -30.91723 -29.14628 -27.33906 -26.58422 -25.74605 -23.34679 -22.76980 -21.42483 -20.08689 -18.84162 -17.18629 -16.77607 -16.11612 -15.61647 -15.51035 -14.81590 -14.50753 -14.33705 -13.96737 -13.70887 -13.46941 -13.25393 -13.12422 -12.76313 -12.55622 -12.36349 -12.19195 -12.09849 -12.07069 -11.48205 -11.32661 -11.13610 -10.94315 -10.91223 -10.79217 -10.61917 -9.95806 -9.65121 -9.24406 -9.10114 -8.98696 -8.88939 -8.32529 -8.14642 -5.96026 -4.00814 1.28836 1.43881 3.14697 3.22226 3.34333 3.39150 3.40888 3.73479 4.46901 4.51903 4.63544 4.98241 5.01202 5.03021 5.13687 5.24727 5.38082 5.38713 5.39671 5.41538 5.46340 5.53491 5.62677 5.68805 5.71935 5.72370 5.76752 6.00273 6.04974 6.06533 6.18914 6.20373 6.32378 6.56599 6.60831 6.71635 6.84367 7.21802 7.62959 7.73597 7.84976 8.06565 8.37509 8.70035 9.07267 9.62661 11.14920 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037331 B = 0.003167 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.864225 B = 8839.840017 C = 9265.396444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.105 4.105 6 C -0.103 4.103 7 C 0.147 3.853 8 N -0.592 5.592 9 C 0.084 3.916 10 C 0.512 3.488 11 O -0.518 6.518 12 C -0.125 4.125 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.122 4.122 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.207 13.422 17.914 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.124 4.124 6 C -0.122 4.122 7 C 0.057 3.943 8 N -0.325 5.325 9 C -0.058 4.058 10 C 0.303 3.697 11 O -0.391 6.391 12 C -0.165 4.165 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.141 4.141 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.371 13.371 17.897 23.525 hybrid contribution 0.403 -0.664 -0.867 1.164 sum 7.774 12.706 17.031 22.626 Atomic orbital electron populations 1.21872 0.94321 1.02255 1.01831 1.20100 0.95997 0.95903 0.95310 1.21858 1.01144 0.95226 1.01850 1.19826 0.98082 0.96098 0.94573 1.20812 0.99951 1.00127 0.91470 1.21270 0.97667 0.94220 0.99088 1.17648 0.97830 0.92422 0.86423 1.45770 1.08418 1.54285 1.24036 1.21807 0.79717 1.01846 1.02437 1.21788 0.86135 0.78455 0.83365 1.90691 1.15925 1.60777 1.71739 1.21907 1.02965 0.98141 0.93513 1.18913 0.91205 0.95876 0.94079 1.21165 0.92934 1.30756 1.11766 0.92624 1.25027 0.94850 0.96644 0.97845 1.69988 1.01238 1.43137 1.38441 0.86644 0.78271 0.80429 0.82533 1.20234 1.21276 1.20237 1.21201 1.01625 0.99755 0.91549 1.20855 0.98443 0.95593 0.98021 0.92375 0.92527 0.92352 0.90606 0.92408 0.92534 0.92588 0.86021 0.85970 0.92557 0.89990 0.91437 0.90065 0.90035 0.95824 0.95814 0.92867 0.85960 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.00 37.16 0.33 -0.91 16 2 C -0.05 -0.47 3.09 -91.77 -0.28 -0.76 16 3 C -0.14 -1.07 9.01 37.16 0.33 -0.74 16 4 C -0.09 -0.96 4.78 -104.59 -0.50 -1.46 16 5 C -0.11 -1.31 8.70 -39.61 -0.34 -1.65 16 6 C -0.10 -1.53 9.31 -39.39 -0.37 -1.90 16 7 C 0.15 2.26 4.82 -83.69 -0.40 1.86 16 8 N -0.59 -9.44 2.93 -120.82 -0.35 -9.79 16 9 C 0.08 0.96 10.10 59.85 0.60 1.57 16 10 C 0.51 10.41 7.55 -10.99 -0.08 10.33 16 11 O -0.52 -12.77 15.54 5.56 0.09 -12.68 16 12 C -0.13 -2.59 4.32 -27.88 -0.12 -2.71 16 13 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 14 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.12 -1.61 9.85 -39.39 -0.39 -2.00 16 23 C -0.11 -1.27 9.66 -39.61 -0.38 -1.65 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 27 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 28 H 0.06 0.44 7.40 -51.93 -0.38 0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.12 1.29 7.09 -52.49 -0.37 0.92 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.89 6.48 -51.93 -0.34 0.55 16 35 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.08 1.51 7.24 -51.93 -0.38 1.13 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.10 7.94 -52.48 -0.42 0.69 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -34.25 348.31 -8.29 -42.54 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.86 Total: -2.25 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.13 Total: -12.90 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.38 Total: -36.66 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.25 -8.29 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291382670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds