Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46841 * 2 1 4 4 C 1.50699 * 109.47177 * 119.99827 * 2 1 3 5 5 C 1.38304 * 119.96434 * 299.97326 * 4 2 1 6 6 C 1.38267 * 120.13880 * 180.02562 * 5 4 2 7 7 C 1.38133 * 120.06925 * 359.68805 * 6 5 4 8 8 C 1.38853 * 119.92924 * 0.59057 * 7 6 5 9 9 N 1.39919 * 120.06930 * 179.70125 * 8 7 6 10 10 C 1.46503 * 119.99979 * 66.90400 * 9 8 7 11 11 C 1.34776 * 120.00090 * 246.90044 * 9 8 7 12 12 O 1.21288 * 119.99987 * 354.71887 * 11 9 8 13 13 C 1.50702 * 120.00075 * 174.72632 * 11 9 8 14 14 C 1.53002 * 109.47107 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.47107 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00047 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46800 * 90.00504 * 19 17 15 21 21 H 1.48499 * 109.47352 * 209.99977 * 19 17 15 22 22 H 1.48497 * 109.47344 * 330.00486 * 19 17 15 23 23 C 1.38094 * 119.96410 * 120.00327 * 4 2 1 24 24 H 1.09005 * 109.47359 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47728 * 59.99732 * 1 2 3 26 26 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46987 * 240.00093 * 2 1 3 28 28 H 1.08999 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46699 * 300.00002 * 3 2 1 30 30 H 1.08998 * 109.47254 * 60.00256 * 3 2 1 31 31 H 1.08000 * 119.93001 * 0.03472 * 5 4 2 32 32 H 1.07997 * 119.96256 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.03276 * 180.31827 * 7 6 5 34 34 H 1.09007 * 109.46870 * 269.99740 * 10 9 8 35 35 H 1.09000 * 109.47436 * 29.99594 * 10 9 8 36 36 H 1.09002 * 109.47174 * 150.00379 * 10 9 8 37 37 H 1.08998 * 109.47529 * 59.99676 * 13 11 9 38 38 H 1.09003 * 109.46961 * 299.99974 * 13 11 9 39 39 H 1.09006 * 109.46821 * 299.99317 * 14 13 11 40 40 H 1.08998 * 109.47300 * 59.99402 * 14 13 11 41 41 H 0.96998 * 120.00415 * 179.97438 * 18 17 15 42 42 H 1.08006 * 120.03265 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6982 -0.2369 2.4862 6 6 2.1576 -0.8855 3.6176 7 6 2.9467 -2.0128 3.4968 8 6 3.2887 -2.4873 2.2374 9 7 4.0930 -3.6253 2.1117 10 6 3.5848 -4.9321 2.5363 11 6 5.3353 -3.5192 1.5998 12 8 5.7213 -2.4569 1.1600 13 6 6.2446 -4.7207 1.5738 14 6 7.5853 -4.3321 0.9474 15 6 8.4944 -5.5337 0.9208 16 1 8.1505 -6.4798 1.3120 17 6 9.7652 -5.4252 0.3971 18 7 10.5588 -6.4737 0.3743 19 14 10.3598 -3.7890 -0.2802 20 1 11.0093 -3.0107 0.8051 21 1 11.3391 -4.0308 -1.3701 22 1 9.2039 -3.0247 -0.8139 23 6 2.8263 -1.8330 1.1029 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0771 0.6413 2.5833 32 1 1.8953 -0.5130 4.5968 33 1 3.3009 -2.5220 4.3809 34 1 3.8337 -5.0954 3.5849 35 1 2.5023 -4.9591 2.4114 36 1 4.0404 -5.7140 1.9287 37 1 5.7835 -5.5128 0.9839 38 1 6.4085 -5.0744 2.5917 39 1 7.4217 -3.9782 -0.0706 40 1 8.0463 -3.5402 1.5377 41 1 11.4527 -6.3976 0.0055 42 1 3.0868 -2.2022 0.1220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291496244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -26.048937 kcal Electronic energy + Delta-G solvation = -20888.886209 eV Core-core repulsion = 17833.282874 eV Total energy + Delta-G solvation = -3055.603335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42368 -38.82495 -36.07919 -34.62027 -33.53337 -31.47861 -30.49534 -29.49600 -27.33382 -26.73302 -26.10229 -23.35414 -22.87867 -21.37256 -19.95199 -18.61029 -17.21528 -16.99298 -16.20776 -16.03984 -15.75809 -15.05481 -14.59289 -14.08581 -13.96485 -13.71092 -13.69067 -13.30992 -13.15207 -12.59644 -12.57714 -12.45803 -12.37238 -12.18859 -12.15151 -11.71539 -11.40463 -11.32021 -11.01048 -10.93316 -10.83890 -10.15817 -10.06130 -9.79301 -9.34605 -9.20641 -9.14927 -8.79542 -8.51538 -8.29508 -6.03754 -4.02648 1.24133 1.35610 3.00683 3.11548 3.37783 3.44343 3.55408 3.67143 4.50148 4.50548 4.64809 4.93954 5.00779 5.05477 5.08134 5.15800 5.26792 5.31640 5.32596 5.40718 5.41751 5.44904 5.56519 5.61632 5.68191 5.74894 5.78901 5.98807 6.01773 6.02186 6.06772 6.07128 6.31879 6.47243 6.50528 6.63416 6.67582 7.12238 7.35076 7.41442 7.49873 7.77770 8.47141 8.57638 8.98861 9.59311 11.09016 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.003933 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.846970 B = 7116.894356 C = 7802.274520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.068 4.068 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.129 4.129 8 C 0.153 3.847 9 N -0.590 5.590 10 C 0.083 3.917 11 C 0.512 3.488 12 O -0.524 6.524 13 C -0.118 4.118 14 C 0.001 3.999 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.103 4.103 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.787 10.596 4.197 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.148 4.148 8 C 0.062 3.938 9 N -0.322 5.322 10 C -0.060 4.060 11 C 0.303 3.697 12 O -0.398 6.398 13 C -0.158 4.158 14 C -0.037 4.037 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.349 11.071 3.886 25.242 hybrid contribution 0.469 0.615 -0.210 0.801 sum -21.879 11.685 3.676 25.075 Atomic orbital electron populations 1.21847 0.94336 1.01945 1.01796 1.20131 0.95807 0.96187 0.95479 1.21853 1.01683 0.94892 1.01690 1.19713 0.97295 0.95079 0.94825 1.20926 1.01024 1.00165 0.91860 1.20945 0.98041 0.95350 0.98531 1.21212 0.99971 0.97139 0.96510 1.17617 0.93812 0.89439 0.92916 1.45717 1.14625 1.06890 1.65009 1.21847 0.99792 0.83691 1.00628 1.21758 0.80600 0.91827 0.75499 1.90677 1.73998 1.30548 1.44581 1.21711 0.96600 0.94056 1.03390 1.19393 0.90629 0.97325 0.96353 1.21091 0.97911 0.96348 1.40911 0.90888 1.24961 0.96571 0.96452 0.95191 1.69908 1.08400 1.29537 1.46360 0.86808 0.79027 0.84646 0.79155 1.20214 1.21394 1.18560 1.21169 0.96768 0.95985 0.98329 0.92496 0.92426 0.92566 0.90407 0.92250 0.92427 0.92513 0.86190 0.85884 0.85960 0.92355 0.91305 0.89836 0.89404 0.89397 0.95816 0.96257 0.92696 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 2 C -0.06 -0.57 3.09 -91.77 -0.28 -0.85 16 3 C -0.14 -1.32 9.01 37.16 0.33 -0.99 16 4 C -0.07 -0.82 4.78 -104.65 -0.50 -1.32 16 5 C -0.12 -1.30 8.71 -39.55 -0.34 -1.64 16 6 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 7 C -0.13 -1.62 9.85 -39.39 -0.39 -2.01 16 8 C 0.15 2.25 4.83 -83.70 -0.40 1.84 16 9 N -0.59 -8.97 2.93 -120.82 -0.35 -9.32 16 10 C 0.08 0.90 10.10 59.85 0.60 1.51 16 11 C 0.51 9.85 7.55 -10.98 -0.08 9.77 16 12 O -0.52 -12.12 15.54 5.55 0.09 -12.04 16 13 C -0.12 -2.32 4.32 -27.88 -0.12 -2.44 16 14 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 15 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 23 C -0.10 -1.48 8.93 -39.39 -0.35 -1.83 16 24 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 31 H 0.12 1.01 7.09 -52.49 -0.37 0.64 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.62 8.05 -51.93 -0.42 0.21 16 36 H 0.08 0.87 6.48 -51.93 -0.34 0.54 16 37 H 0.09 1.57 7.24 -51.93 -0.38 1.19 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.12 1.83 7.94 -52.48 -0.42 1.41 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -34.19 344.71 -7.92 -42.10 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.83 Total: -2.95 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.12 Total: -13.81 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.42 Total: -36.59 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.19 -7.92 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291496244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.054 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds