Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46841 * 2 1 4 4 C 1.50699 * 109.47177 * 119.99827 * 2 1 3 5 5 C 1.38304 * 119.96434 * 299.97326 * 4 2 1 6 6 C 1.38267 * 120.13880 * 180.02562 * 5 4 2 7 7 C 1.38133 * 120.06925 * 359.68805 * 6 5 4 8 8 C 1.38853 * 119.92924 * 0.59057 * 7 6 5 9 9 N 1.39919 * 120.06930 * 179.70125 * 8 7 6 10 10 C 1.46503 * 119.99979 * 66.90400 * 9 8 7 11 11 C 1.34776 * 120.00090 * 246.90044 * 9 8 7 12 12 O 1.21288 * 119.99987 * 354.71887 * 11 9 8 13 13 C 1.50702 * 120.00075 * 174.72632 * 11 9 8 14 14 C 1.53002 * 109.47107 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.47107 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00047 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46800 * 90.00504 * 19 17 15 21 21 H 1.48499 * 109.47352 * 209.99977 * 19 17 15 22 22 H 1.48497 * 109.47344 * 330.00486 * 19 17 15 23 23 C 1.38094 * 119.96410 * 120.00327 * 4 2 1 24 24 H 1.09005 * 109.47359 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47728 * 59.99732 * 1 2 3 26 26 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46987 * 240.00093 * 2 1 3 28 28 H 1.08999 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46699 * 300.00002 * 3 2 1 30 30 H 1.08998 * 109.47254 * 60.00256 * 3 2 1 31 31 H 1.08000 * 119.93001 * 0.03472 * 5 4 2 32 32 H 1.07997 * 119.96256 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.03276 * 180.31827 * 7 6 5 34 34 H 1.09007 * 109.46870 * 269.99740 * 10 9 8 35 35 H 1.09000 * 109.47436 * 29.99594 * 10 9 8 36 36 H 1.09002 * 109.47174 * 150.00379 * 10 9 8 37 37 H 1.08998 * 109.47529 * 59.99676 * 13 11 9 38 38 H 1.09003 * 109.46961 * 299.99974 * 13 11 9 39 39 H 1.09006 * 109.46821 * 299.99317 * 14 13 11 40 40 H 1.08998 * 109.47300 * 59.99402 * 14 13 11 41 41 H 0.96998 * 120.00415 * 179.97438 * 18 17 15 42 42 H 1.08006 * 120.03265 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6982 -0.2369 2.4862 6 6 2.1576 -0.8855 3.6176 7 6 2.9467 -2.0128 3.4968 8 6 3.2887 -2.4873 2.2374 9 7 4.0930 -3.6253 2.1117 10 6 3.5848 -4.9321 2.5363 11 6 5.3353 -3.5192 1.5998 12 8 5.7213 -2.4569 1.1600 13 6 6.2446 -4.7207 1.5738 14 6 7.5853 -4.3321 0.9474 15 6 8.4944 -5.5337 0.9208 16 1 8.1505 -6.4798 1.3120 17 6 9.7652 -5.4252 0.3971 18 7 10.5588 -6.4737 0.3743 19 14 10.3598 -3.7890 -0.2802 20 1 11.0093 -3.0107 0.8051 21 1 11.3391 -4.0308 -1.3701 22 1 9.2039 -3.0247 -0.8139 23 6 2.8263 -1.8330 1.1029 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0771 0.6413 2.5833 32 1 1.8953 -0.5130 4.5968 33 1 3.3009 -2.5220 4.3809 34 1 3.8337 -5.0954 3.5849 35 1 2.5023 -4.9591 2.4114 36 1 4.0404 -5.7140 1.9287 37 1 5.7835 -5.5128 0.9839 38 1 6.4085 -5.0744 2.5917 39 1 7.4217 -3.9782 -0.0706 40 1 8.0463 -3.5402 1.5377 41 1 11.4527 -6.3976 0.0055 42 1 3.0868 -2.2022 0.1220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291496244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -45.426974 kcal Electronic energy + Delta-G solvation = -20889.726504 eV Core-core repulsion = 17833.282874 eV Total energy + Delta-G solvation = -3056.443630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61030 -39.97403 -37.19673 -35.68136 -35.52259 -33.40657 -31.54078 -30.49613 -28.21583 -27.99351 -27.50313 -24.52355 -23.91022 -22.86272 -21.21853 -19.89625 -19.11414 -18.10737 -17.58580 -17.18881 -16.97277 -16.27861 -16.18385 -15.58206 -14.97431 -14.90832 -14.65522 -14.50958 -14.41810 -14.30839 -13.87524 -13.51790 -13.37965 -13.21555 -13.01314 -12.93149 -12.88036 -12.62777 -12.13081 -12.05688 -11.99541 -11.81968 -11.76339 -11.61120 -11.42844 -10.86118 -10.80208 -10.26517 -9.73829 -9.35606 -8.33678 -6.36476 0.28077 0.41764 1.30596 1.32651 1.47740 1.54046 1.93303 2.32726 2.74274 3.01855 3.65168 3.79420 3.87851 4.06346 4.19095 4.24422 4.29394 4.31190 4.36355 4.39858 4.48905 4.55026 4.65736 4.69466 4.80379 4.81187 4.95374 4.96908 4.98608 5.03414 5.18542 5.27407 5.28931 5.37887 5.38555 5.44216 5.49852 5.57444 5.58717 5.73614 6.09914 6.19281 6.24575 6.69407 7.13986 7.28969 8.81895 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.003933 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.846970 B = 7116.894356 C = 7802.274520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.072 4.072 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.136 4.136 8 C 0.123 3.877 9 N -0.579 5.579 10 C 0.074 3.926 11 C 0.512 3.488 12 O -0.574 6.574 13 C -0.110 4.110 14 C 0.006 3.994 15 C -0.528 4.528 16 H 0.054 0.946 17 C 0.016 3.984 18 N -0.941 5.941 19 Si 0.935 3.065 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.265 1.265 23 C -0.128 4.128 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.008 0.992 40 H 0.006 0.994 41 H 0.268 0.732 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.005 12.164 5.396 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.155 4.155 8 C 0.033 3.967 9 N -0.309 5.309 10 C -0.067 4.067 11 C 0.304 3.696 12 O -0.453 6.453 13 C -0.149 4.149 14 C -0.032 4.032 15 C -0.566 4.566 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.582 5.582 19 Si 0.760 3.240 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.148 4.148 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.614 12.610 5.109 28.124 hybrid contribution 1.053 0.091 -0.540 1.187 sum -23.561 12.701 4.569 27.154 Atomic orbital electron populations 1.21807 0.92371 1.02065 1.03075 1.20182 0.97364 0.96209 0.94084 1.21841 1.00228 0.94615 1.03169 1.19986 0.96534 0.94287 0.96453 1.21291 1.00532 1.00661 0.91073 1.21358 0.96561 0.94204 1.00134 1.21403 1.00347 0.97931 0.95845 1.17882 0.94829 0.89942 0.94025 1.45618 1.13262 1.08767 1.63260 1.22158 1.01105 0.81651 1.01769 1.21523 0.81865 0.90677 0.75567 1.90648 1.75422 1.31984 1.47211 1.21524 0.94299 0.94900 1.04182 1.19227 0.92875 0.95351 0.95759 1.21387 0.98480 0.96758 1.39958 0.92817 1.25753 0.97015 0.99621 0.95764 1.70009 1.09038 1.31463 1.47676 0.85878 0.78518 0.80648 0.78968 1.19367 1.20101 1.18959 1.21173 0.98619 0.97566 0.97438 0.91188 0.91166 0.93035 0.91863 0.94493 0.90925 0.91086 0.83253 0.82584 0.84750 0.90365 0.89223 0.89433 0.87604 0.87658 0.97375 0.97511 0.92301 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.01 71.98 0.65 -1.19 16 2 C -0.06 -1.12 3.09 -11.54 -0.04 -1.16 16 3 C -0.14 -2.39 9.01 71.98 0.65 -1.74 16 4 C -0.07 -1.65 4.78 -19.88 -0.10 -1.75 16 5 C -0.12 -2.18 8.71 22.29 0.19 -1.99 16 6 C -0.10 -1.93 10.04 22.25 0.22 -1.70 16 7 C -0.14 -3.16 9.85 22.39 0.22 -2.94 16 8 C 0.12 3.56 4.83 38.15 0.18 3.75 16 9 N -0.58 -17.28 2.93 -654.55 -1.92 -19.20 16 10 C 0.07 1.48 10.10 127.77 1.29 2.77 16 11 C 0.51 19.87 7.55 87.66 0.66 20.53 16 12 O -0.57 -27.35 15.54 -3.05 -0.05 -27.39 16 13 C -0.11 -4.29 4.32 29.85 0.13 -4.17 16 14 C 0.01 0.30 3.33 29.85 0.10 0.40 16 15 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 16 H 0.05 3.26 7.99 -2.91 -0.02 3.23 16 17 C 0.02 0.98 5.47 84.65 0.46 1.45 16 18 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 19 Si 0.94 47.46 27.47 68.60 1.88 49.35 16 20 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -13.53 6.54 99.48 0.65 -12.88 16 23 C -0.13 -3.75 8.93 22.39 0.20 -3.55 16 24 H 0.07 0.77 7.39 -2.38 -0.02 0.75 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.34 7.87 -2.39 -0.02 1.32 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.98 7.38 -2.39 -0.02 0.96 16 31 H 0.15 1.87 7.09 -2.91 -0.02 1.85 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 36 H 0.09 1.68 6.48 -2.39 -0.02 1.67 16 37 H 0.11 3.73 7.24 -2.39 -0.02 3.71 16 38 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 39 H 0.01 0.42 7.15 -2.38 -0.02 0.41 16 40 H 0.01 0.35 7.53 -2.39 -0.02 0.33 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.10 3.21 7.94 -2.91 -0.02 3.19 16 Total: -1.00 -75.56 344.71 6.22 -69.34 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.92 Total: 8.50 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 5.08 Total: -21.75 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.62 Total: -78.04 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.88 Total: 49.35 kcal Total: -75.56 6.22 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291496244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.911 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds