Wall clock time and date at job start Mon Mar 30 2020 01:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99876 * 2 1 4 4 N 1.46905 * 109.46769 * 124.74823 * 3 2 1 5 5 C 1.46900 * 111.00135 * 199.47681 * 4 3 2 6 6 C 1.50704 * 109.46914 * 66.04555 * 5 4 3 7 7 H 1.08001 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99560 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99858 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00436 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46962 * 89.99922 * 10 8 6 12 12 H 1.48498 * 109.47076 * 210.00043 * 10 8 6 13 13 H 1.48496 * 109.46843 * 330.00077 * 10 8 6 14 14 C 1.46902 * 110.99811 * 75.52212 * 4 3 2 15 15 C 1.53002 * 109.46874 * 199.58258 * 14 4 3 16 16 O 1.42895 * 109.46947 * 65.70070 * 15 14 4 17 17 C 1.35909 * 116.99727 * 180.18544 * 16 15 14 18 18 C 1.38750 * 120.05440 * 359.72707 * 17 16 15 19 19 C 1.38125 * 119.93857 * 179.69881 * 18 17 16 20 20 C 1.38283 * 120.05608 * 0.59732 * 19 18 17 21 21 C 1.38241 * 120.11394 * 359.68001 * 20 19 18 22 22 C 1.50697 * 119.97236 * 179.97438 * 21 20 19 23 23 C 1.38166 * 120.05104 * 0.02562 * 21 20 19 24 24 H 1.08000 * 120.00320 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.00196 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99602 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47190 * 4.75154 * 3 2 1 28 28 H 1.08996 * 109.47658 * 244.74595 * 3 2 1 29 29 H 1.08993 * 109.47498 * 186.04976 * 5 4 3 30 30 H 1.09006 * 109.47071 * 306.04730 * 5 4 3 31 31 H 0.96994 * 119.99721 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.46717 * 79.58899 * 14 4 3 33 33 H 1.08994 * 109.47335 * 319.58258 * 14 4 3 34 34 H 1.09003 * 109.46780 * 185.70455 * 15 14 4 35 35 H 1.09005 * 109.47310 * 305.69879 * 15 14 4 36 36 H 1.07998 * 120.03298 * 359.97313 * 18 17 16 37 37 H 1.08007 * 119.96967 * 180.29713 * 19 18 17 38 38 H 1.08004 * 119.94032 * 179.69631 * 20 19 18 39 39 H 1.08991 * 109.47376 * 270.02033 * 22 21 20 40 40 H 1.09003 * 109.47474 * 30.02348 * 22 21 20 41 41 H 1.09002 * 109.46784 * 150.01974 * 22 21 20 42 42 H 1.08002 * 120.02251 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9919 1.3344 1.1381 5 6 3.3961 2.7113 1.4525 6 6 2.2006 3.4856 1.9450 7 1 1.2372 3.0030 2.0176 8 6 2.3370 4.8101 2.3029 9 7 1.2939 5.4858 2.7332 10 14 4.0033 5.6450 2.1767 11 1 4.1523 6.2514 0.8293 12 1 4.1051 6.7057 3.2109 13 1 5.0771 4.6415 2.3894 14 6 4.1643 0.4868 0.8829 15 6 4.8454 0.1456 2.2098 16 8 3.9732 -0.6672 2.9976 17 6 4.4282 -1.0579 4.2172 18 6 5.6905 -0.6716 4.6445 19 6 6.1480 -1.0648 5.8870 20 6 5.3541 -1.8530 6.6998 21 6 4.0983 -2.2440 6.2740 22 6 3.2360 -3.1035 7.1621 23 6 3.6337 -1.8483 5.0345 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3582 2.1318 0.0851 28 1 2.6248 1.4006 -0.9294 29 1 4.1636 2.6970 2.2262 30 1 3.7929 3.1872 0.5557 31 1 1.3900 6.4174 2.9853 32 1 4.8656 1.0204 0.2413 33 1 3.8478 -0.4323 0.3900 34 1 5.7702 -0.3972 2.0144 35 1 5.0711 1.0653 2.7495 36 1 6.3130 -0.0603 4.0079 37 1 7.1286 -0.7604 6.2221 38 1 5.7156 -2.1635 7.6690 39 1 3.4344 -4.1548 6.9539 40 1 3.4643 -2.8906 8.2065 41 1 2.1855 -2.8867 6.9683 42 1 2.6524 -2.1537 4.7025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292191505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:02 Heat of formation + Delta-G solvation = -8.380433 kcal Electronic energy + Delta-G solvation = -20998.602305 eV Core-core repulsion = 17943.765133 eV Total energy + Delta-G solvation = -3054.837171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04317 -39.20018 -38.10695 -34.93074 -34.24105 -33.35920 -31.86700 -30.39152 -29.20915 -27.79546 -26.02106 -24.32497 -23.39538 -22.41698 -21.38886 -20.42999 -19.05048 -18.69554 -17.32454 -16.99407 -16.81404 -16.52260 -16.21293 -15.71232 -15.24879 -15.13978 -14.68256 -14.52331 -14.41735 -14.16748 -13.98900 -13.67278 -13.53993 -13.15115 -12.93792 -12.79348 -12.60017 -12.45054 -12.35410 -12.22922 -11.87505 -11.79537 -11.64724 -11.40575 -11.37299 -10.79352 -10.24657 -9.69273 -9.04932 -8.97891 -8.28746 -6.31682 0.40900 0.56539 1.31477 1.34043 1.43987 1.46160 2.32709 2.35538 2.85503 3.03930 3.26415 3.87004 3.95253 3.99811 4.09346 4.19770 4.21145 4.33008 4.40943 4.43535 4.46263 4.52615 4.58606 4.61509 4.76852 4.81479 4.85963 4.90094 4.97156 5.03793 5.07176 5.10663 5.27171 5.44559 5.53573 5.53743 5.68932 5.75205 5.93383 5.98918 6.04778 6.35038 6.57153 6.68662 6.74702 7.31226 8.88276 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.005209 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.671451 B = 5373.877920 C = 6338.725469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C 0.086 3.914 4 N -0.536 5.536 5 C 0.171 3.829 6 C -0.513 4.513 7 H 0.033 0.967 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.946 3.054 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.248 1.248 14 C 0.050 3.950 15 C 0.069 3.931 16 O -0.316 6.316 17 C 0.117 3.883 18 C -0.233 4.233 19 C -0.080 4.080 20 C -0.170 4.170 21 C -0.054 4.054 22 C -0.112 4.112 23 C -0.180 4.180 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.029 0.971 30 H -0.009 1.009 31 H 0.266 0.734 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.777 -16.938 2.412 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C -0.042 4.042 4 N -0.260 5.260 5 C 0.044 3.956 6 C -0.552 4.552 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.590 5.590 10 Si 0.769 3.231 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.172 1.172 14 C -0.078 4.078 15 C -0.007 4.007 16 O -0.229 6.229 17 C 0.071 3.929 18 C -0.252 4.252 19 C -0.098 4.098 20 C -0.188 4.188 21 C -0.054 4.054 22 C -0.168 4.168 23 C -0.199 4.199 24 H 0.098 0.902 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.300 -16.990 2.770 20.061 hybrid contribution 0.641 1.489 -0.707 1.769 sum 10.941 -15.502 2.063 19.086 Atomic orbital electron populations 1.23884 0.95961 1.01917 1.01346 1.22882 0.96085 0.97689 0.99073 1.21129 0.95480 0.96308 0.91256 1.61807 1.14822 1.10707 1.38677 1.19987 0.95277 0.85821 0.94473 1.21243 0.95706 0.95358 1.42866 0.94830 1.25860 1.00756 0.97951 0.94434 1.70062 1.32252 1.10277 1.46388 0.85736 0.80134 0.78661 0.78555 1.18943 1.20839 1.17173 1.22288 0.92517 0.98351 0.94610 1.22949 0.92688 0.93509 0.91518 1.86152 1.45001 1.65607 1.26184 1.19420 0.93266 0.94360 0.85838 1.21462 0.96331 1.07108 1.00250 1.21266 1.00408 0.95584 0.92509 1.21254 0.94407 1.01575 1.01608 1.20063 0.95450 0.96562 0.93326 1.20854 0.98412 0.98925 0.98639 1.20501 1.00861 1.03277 0.95259 0.90161 0.86358 0.86237 0.92497 0.93559 0.95346 0.99147 0.92503 0.91378 0.88737 0.89233 0.93444 0.84991 0.83405 0.83405 0.89542 0.89771 0.91546 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.14 14.32 67.78 0.97 -5.17 16 2 C -0.14 -4.61 9.32 25.65 0.24 -4.37 16 3 C 0.09 3.33 5.24 85.55 0.45 3.78 16 4 N -0.54 -22.34 4.31 -905.36 -3.90 -26.24 16 5 C 0.17 8.23 3.62 85.56 0.31 8.54 16 6 C -0.51 -30.32 8.79 25.60 0.23 -30.09 16 7 H 0.03 2.24 7.55 -2.91 -0.02 2.22 16 8 C 0.01 0.42 5.47 84.65 0.46 0.88 16 9 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 10 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 14 C 0.05 1.58 5.19 86.30 0.45 2.03 16 15 C 0.07 2.12 4.93 71.98 0.36 2.47 16 16 O -0.32 -11.30 10.09 -92.52 -0.93 -12.24 16 17 C 0.12 3.83 6.69 22.50 0.15 3.98 16 18 C -0.23 -6.53 9.04 22.37 0.20 -6.32 16 19 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 20 C -0.17 -3.73 9.70 22.28 0.22 -3.51 16 21 C -0.05 -1.31 5.88 -19.88 -0.12 -1.42 16 22 C -0.11 -1.92 10.01 71.23 0.71 -1.21 16 23 C -0.18 -5.44 9.64 22.36 0.22 -5.23 16 24 H 0.08 2.80 7.84 -2.91 -0.02 2.77 16 25 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 26 H 0.12 3.46 7.27 -2.91 -0.02 3.44 16 27 H 0.06 2.64 6.23 -2.39 -0.01 2.63 16 28 H 0.05 1.60 8.00 -2.39 -0.02 1.58 16 29 H 0.03 1.37 5.61 -2.39 -0.01 1.35 16 30 H -0.01 -0.42 7.55 -2.38 -0.02 -0.44 16 31 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 33 H 0.09 2.62 6.80 -2.39 -0.02 2.60 16 34 H 0.09 2.10 7.66 -2.39 -0.02 2.09 16 35 H 0.05 1.63 6.16 -2.38 -0.01 1.61 16 36 H 0.13 3.35 6.30 -2.91 -0.02 3.33 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 42 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -71.57 344.27 3.34 -68.23 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.92 Total: 21.52 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 5.06 Total: -37.29 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.60 Total: -86.35 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.93 Total: -12.24 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -71.57 3.34 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.851 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds