Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 N 1.46502 * 109.47002 * 270.01830 * 8 7 6 10 10 C 1.34778 * 119.99945 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99670 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46870 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47208 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99825 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00118 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46923 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46840 * 120.00083 * 18 16 14 21 21 H 1.48494 * 109.47203 * 240.00396 * 18 16 14 22 22 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 23 23 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 33 33 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 34 34 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 35 35 H 0.97003 * 119.99913 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47634 * 299.99857 * 12 10 9 37 37 H 1.08999 * 109.47311 * 60.00527 * 12 10 9 38 38 H 1.08998 * 109.47354 * 300.00400 * 13 12 10 39 39 H 1.09005 * 109.47173 * 60.00235 * 13 12 10 40 40 H 0.97002 * 119.99930 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.00252 * 179.97438 * 22 7 6 42 42 H 1.07991 * 120.00142 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 7 2.4910 -3.7518 -5.1172 10 6 2.7314 -4.5182 -6.1994 11 8 3.7468 -4.3575 -6.8429 12 6 1.7390 -5.5757 -6.6092 13 6 2.2490 -6.2968 -7.8586 14 6 1.2570 -7.3548 -8.2681 15 1 0.3529 -7.4982 -7.6949 16 6 1.5030 -8.1390 -9.3752 17 7 2.6035 -7.9640 -10.0735 18 14 0.2729 -9.4499 -9.8832 19 1 -0.8740 -9.4446 -8.9399 20 1 -0.2150 -9.1651 -11.2566 21 1 0.9296 -10.7815 -9.8572 22 6 3.2875 -2.4861 -2.2324 23 6 2.8271 -1.8343 -1.1037 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.0688 0.6339 -2.5850 32 1 1.8972 -0.5213 -4.5956 33 1 3.5770 -2.0055 -5.5288 34 1 4.4162 -3.1921 -4.5012 35 1 1.6790 -3.8806 -4.6023 36 1 1.6187 -6.2947 -5.7989 37 1 0.7785 -5.1082 -6.8258 38 1 2.3697 -5.5782 -8.6691 39 1 3.2095 -6.7645 -7.6416 40 1 2.7764 -8.5155 -10.8526 41 1 3.9084 -3.3643 -2.1333 42 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292711143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = -46.340768 kcal Electronic energy + Delta-G solvation = -19915.882101 eV Core-core repulsion = 16859.398846 eV Total energy + Delta-G solvation = -3056.483255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05351 -38.93381 -36.22422 -34.09216 -33.41516 -31.26032 -31.11227 -30.25105 -27.51243 -26.63393 -25.04895 -23.15337 -22.31227 -21.37915 -20.21898 -19.61495 -17.09977 -16.58748 -16.01124 -15.60792 -15.53082 -14.96930 -14.88323 -14.39258 -14.23918 -13.92987 -13.83942 -13.59003 -13.03897 -12.96283 -12.73964 -12.40371 -12.14485 -12.03666 -11.90034 -11.51380 -11.49095 -11.13150 -10.96506 -10.93231 -10.91698 -10.56233 -9.93343 -9.64491 -9.27037 -9.12716 -9.05873 -8.75094 -8.68278 -8.30294 -5.94269 -3.98469 1.03216 1.20167 3.29462 3.33866 3.36169 3.41023 3.44459 3.90404 4.29820 4.43028 4.49526 4.63970 4.76176 4.81269 4.82295 5.06395 5.20230 5.23571 5.24939 5.40660 5.45405 5.47997 5.50335 5.56344 5.60143 5.79067 5.82521 5.85921 5.90070 5.92330 6.19831 6.26137 6.28483 6.39230 6.44659 6.72461 6.78830 6.92819 7.77019 7.89068 7.93359 8.09595 8.41115 8.81633 9.10504 9.64963 11.16737 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.002569 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.523059 B =10896.235614 C =11299.100242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.117 4.117 6 C -0.099 4.099 7 C -0.105 4.105 8 C 0.159 3.841 9 N -0.740 5.740 10 C 0.509 3.491 11 O -0.535 6.535 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.098 4.098 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 18.041 22.352 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.117 4.117 7 C -0.105 4.105 8 C 0.036 3.964 9 N -0.394 5.394 10 C 0.298 3.702 11 O -0.411 6.411 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.117 4.117 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.013 18.086 21.697 28.318 hybrid contribution -0.976 -0.778 -0.069 1.251 sum -2.990 17.307 21.629 27.862 Atomic orbital electron populations 1.21862 0.94224 1.02163 1.01950 1.20145 0.96050 0.96059 0.95385 1.21858 1.01266 0.95086 1.01947 1.19895 0.97276 0.95578 0.94674 1.20952 1.00526 1.00224 0.91825 1.21115 0.96677 0.95081 0.98843 1.19963 0.99349 0.96580 0.94641 1.20102 0.92701 0.90351 0.93256 1.46282 1.24552 1.37472 1.31142 1.21592 0.88056 0.81848 0.78741 1.90670 1.28351 1.69172 1.52884 1.21863 0.97175 0.95385 1.02515 1.18909 0.96550 0.94578 0.90093 1.21269 1.05835 1.17768 1.11528 0.92557 1.25035 0.95435 0.97503 0.96505 1.70012 1.24931 1.39848 1.18064 0.86533 0.81335 0.81653 0.78425 1.19760 1.21031 1.21026 1.21116 0.99342 0.99446 0.91782 1.21046 0.98539 0.95721 0.98550 0.92377 0.92419 0.92407 0.90504 0.92402 0.92400 0.92513 0.86110 0.85802 0.91059 0.91061 0.76857 0.90261 0.90265 0.95815 0.95815 0.93024 0.85782 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.00 37.16 0.33 -0.54 16 2 C -0.06 -0.38 3.09 -91.77 -0.28 -0.66 16 3 C -0.14 -0.84 9.01 37.16 0.33 -0.51 16 4 C -0.07 -0.62 4.78 -104.62 -0.50 -1.12 16 5 C -0.12 -1.02 8.71 -39.58 -0.34 -1.37 16 6 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 7 C -0.10 -1.13 5.25 -104.62 -0.55 -1.67 16 8 C 0.16 2.08 5.80 -5.19 -0.03 2.05 16 9 N -0.74 -10.80 5.55 -61.47 -0.34 -11.14 16 10 C 0.51 10.01 7.83 -10.98 -0.09 9.92 16 11 O -0.54 -12.88 15.98 5.56 0.09 -12.79 16 12 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 23 C -0.12 -1.06 9.67 -39.58 -0.38 -1.44 16 24 H 0.06 0.35 7.37 -51.93 -0.38 -0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 28 H 0.06 0.34 7.41 -51.93 -0.38 -0.05 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.12 0.87 7.10 -52.48 -0.37 0.50 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.40 4.82 8.46 -40.82 -0.35 4.47 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.12 0.85 7.95 -52.49 -0.42 0.44 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -33.94 352.25 -9.11 -43.05 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.92 Total: -0.44 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.96 Total: -13.86 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.40 Total: -38.11 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.94 -9.11 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292711143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.292 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds