Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 N 1.46502 * 109.47002 * 270.01830 * 8 7 6 10 10 C 1.34778 * 119.99945 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99670 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46870 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47208 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99825 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00118 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46923 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46840 * 120.00083 * 18 16 14 21 21 H 1.48494 * 109.47203 * 240.00396 * 18 16 14 22 22 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 23 23 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 33 33 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 34 34 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 35 35 H 0.97003 * 119.99913 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47634 * 299.99857 * 12 10 9 37 37 H 1.08999 * 109.47311 * 60.00527 * 12 10 9 38 38 H 1.08998 * 109.47354 * 300.00400 * 13 12 10 39 39 H 1.09005 * 109.47173 * 60.00235 * 13 12 10 40 40 H 0.97002 * 119.99930 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.00252 * 179.97438 * 22 7 6 42 42 H 1.07991 * 120.00142 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 7 2.4910 -3.7518 -5.1172 10 6 2.7314 -4.5182 -6.1994 11 8 3.7468 -4.3575 -6.8429 12 6 1.7390 -5.5757 -6.6092 13 6 2.2490 -6.2968 -7.8586 14 6 1.2570 -7.3548 -8.2681 15 1 0.3529 -7.4982 -7.6949 16 6 1.5030 -8.1390 -9.3752 17 7 2.6035 -7.9640 -10.0735 18 14 0.2729 -9.4499 -9.8832 19 1 -0.8740 -9.4446 -8.9399 20 1 -0.2150 -9.1651 -11.2566 21 1 0.9296 -10.7815 -9.8572 22 6 3.2875 -2.4861 -2.2324 23 6 2.8271 -1.8343 -1.1037 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.0688 0.6339 -2.5850 32 1 1.8972 -0.5213 -4.5956 33 1 3.5770 -2.0055 -5.5288 34 1 4.4162 -3.1921 -4.5012 35 1 1.6790 -3.8806 -4.6023 36 1 1.6187 -6.2947 -5.7989 37 1 0.7785 -5.1082 -6.8258 38 1 2.3697 -5.5782 -8.6691 39 1 3.2095 -6.7645 -7.6416 40 1 2.7764 -8.5155 -10.8526 41 1 3.9084 -3.3643 -2.1333 42 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292711143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = -66.727486 kcal Electronic energy + Delta-G solvation = -19916.766135 eV Core-core repulsion = 16859.398846 eV Total energy + Delta-G solvation = -3057.367290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99423 -40.27521 -37.04534 -35.58492 -35.19106 -33.07010 -31.89606 -31.32703 -28.16824 -27.95105 -26.55157 -23.95163 -23.57633 -22.73001 -21.26686 -20.78814 -18.86326 -17.80258 -17.28121 -16.96983 -16.63130 -16.39463 -16.17326 -15.81836 -14.97449 -14.79224 -14.54046 -14.50012 -14.35420 -14.17462 -14.15681 -13.45367 -13.30935 -13.22570 -12.92200 -12.83760 -12.75388 -12.43899 -12.15987 -12.00107 -11.92712 -11.64519 -11.57536 -11.49164 -11.28628 -10.82720 -10.58000 -10.10940 -9.83482 -9.54045 -8.18005 -6.32036 0.27220 0.48834 1.42264 1.43840 1.57186 1.70644 2.27607 2.44933 2.91805 3.14924 3.62341 3.80802 3.86980 4.07808 4.09280 4.13974 4.34889 4.40937 4.49953 4.53831 4.55903 4.56391 4.71052 4.73758 4.83777 4.98598 5.02406 5.05088 5.08314 5.16321 5.19883 5.36138 5.41336 5.41534 5.50776 5.51511 5.63338 5.65941 5.74582 5.85730 6.06915 6.17842 6.59482 6.86624 7.32703 7.38290 8.94926 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.002569 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.523059 B =10896.235614 C =11299.100242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.072 4.072 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.116 4.116 8 C 0.162 3.838 9 N -0.714 5.714 10 C 0.511 3.489 11 O -0.589 6.589 12 C -0.119 4.119 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.104 4.104 23 C -0.125 4.125 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.104 0.896 37 H 0.104 0.896 38 H -0.018 1.018 39 H -0.018 1.018 40 H 0.263 0.737 41 H 0.128 0.872 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 18.405 24.637 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.072 4.072 5 C -0.138 4.138 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.039 3.961 9 N -0.367 5.367 10 C 0.300 3.700 11 O -0.469 6.469 12 C -0.158 4.158 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.176 1.176 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.123 4.123 23 C -0.143 4.143 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.380 18.477 24.049 30.642 hybrid contribution -0.228 -0.798 -0.693 1.081 sum -4.608 17.679 23.356 29.653 Atomic orbital electron populations 1.21856 0.93725 1.01955 1.02562 1.20195 0.96392 0.96298 0.94678 1.21852 1.00937 0.94700 1.02570 1.20195 0.96391 0.95235 0.95371 1.21152 1.00459 1.00565 0.91576 1.21217 0.96618 0.94917 0.99588 1.19722 1.00845 0.97301 0.93753 1.20113 0.92068 0.89641 0.94271 1.46002 1.25177 1.36292 1.29270 1.21362 0.87024 0.82115 0.79506 1.90656 1.30395 1.70832 1.55033 1.21637 0.98015 0.96015 1.00179 1.18703 0.95010 0.93983 0.91954 1.21746 1.06489 1.17862 1.11861 0.90595 1.26161 0.97583 1.00323 0.96546 1.70188 1.27463 1.41369 1.18791 0.85253 0.78775 0.77828 0.78253 1.17610 1.20608 1.20601 1.21222 0.99476 0.99788 0.91805 1.21289 0.98271 0.95712 0.98993 0.92408 0.93017 0.91228 0.89740 0.92425 0.91201 0.93028 0.84527 0.85487 0.91850 0.91850 0.74940 0.87779 0.87775 0.99908 0.99911 0.92854 0.85451 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.00 71.98 0.65 -0.72 16 2 C -0.06 -0.60 3.09 -11.54 -0.04 -0.64 16 3 C -0.14 -1.33 9.01 71.98 0.65 -0.68 16 4 C -0.07 -1.04 4.78 -19.87 -0.09 -1.14 16 5 C -0.12 -1.85 8.71 22.27 0.19 -1.66 16 6 C -0.10 -1.93 9.70 22.27 0.22 -1.71 16 7 C -0.12 -2.38 5.25 -19.87 -0.10 -2.48 16 8 C 0.16 4.24 5.80 85.63 0.50 4.73 16 9 N -0.71 -20.34 5.55 -466.78 -2.59 -22.93 16 10 C 0.51 20.34 7.83 87.66 0.69 21.03 16 11 O -0.59 -29.65 15.98 -3.04 -0.05 -29.70 16 12 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 13 C 0.04 2.33 4.26 29.85 0.13 2.46 16 14 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 17 N -0.94 -60.18 13.29 21.45 0.28 -59.89 16 18 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 19 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.10 -1.92 9.70 22.27 0.22 -1.70 16 23 C -0.12 -1.93 9.67 22.27 0.22 -1.72 16 24 H 0.06 0.55 7.37 -2.39 -0.02 0.54 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.78 7.88 -2.39 -0.02 0.76 16 28 H 0.06 0.54 7.41 -2.39 -0.02 0.52 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.14 1.64 7.10 -2.91 -0.02 1.62 16 32 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.06 1.77 8.09 -2.39 -0.02 1.75 16 34 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 35 H 0.41 9.24 8.46 -92.71 -0.78 8.45 16 36 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 38 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 39 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.14 1.60 7.95 -2.92 -0.02 1.58 16 Total: -1.00 -76.04 352.25 3.95 -72.09 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.20 Total: 13.67 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.08 Total: -19.99 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.30 Total: -82.82 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.04 3.95 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292711143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.358 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds